data_6PRA # _model_server_result.job_id m6ixftdTb8CrzmPQlnEgkg _model_server_result.datetime_utc '2025-02-23 09:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6PRA # _exptl.entry_id 6PRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PRA _cell.length_a 78.89 _cell.length_b 78.89 _cell.length_c 106.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6PRA _atom_sites.fract_transf_matrix[1][1] 0.012676 _atom_sites.fract_transf_matrix[1][2] 0.007318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 GOL A 1 202 401 GOL GOL . D 3 GOL A 1 203 501 GOL GOL . E 4 HOH A 1 301 160 HOH HOH . E 4 HOH A 2 302 63 HOH HOH . E 4 HOH A 3 303 142 HOH HOH . E 4 HOH A 4 304 119 HOH HOH . E 4 HOH A 5 305 133 HOH HOH . E 4 HOH A 6 306 9 HOH HOH . E 4 HOH A 7 307 77 HOH HOH . E 4 HOH A 8 308 136 HOH HOH . E 4 HOH A 9 309 144 HOH HOH . E 4 HOH A 10 310 152 HOH HOH . E 4 HOH A 11 311 44 HOH HOH . E 4 HOH A 12 312 17 HOH HOH . E 4 HOH A 13 313 19 HOH HOH . E 4 HOH A 14 314 16 HOH HOH . E 4 HOH A 15 315 108 HOH HOH . E 4 HOH A 16 316 14 HOH HOH . E 4 HOH A 17 317 22 HOH HOH . E 4 HOH A 18 318 85 HOH HOH . E 4 HOH A 19 319 5 HOH HOH . E 4 HOH A 20 320 137 HOH HOH . E 4 HOH A 21 321 55 HOH HOH . E 4 HOH A 22 322 81 HOH HOH . E 4 HOH A 23 323 75 HOH HOH . E 4 HOH A 24 324 71 HOH HOH . E 4 HOH A 25 325 66 HOH HOH . E 4 HOH A 26 326 35 HOH HOH . E 4 HOH A 27 327 59 HOH HOH . E 4 HOH A 28 328 105 HOH HOH . E 4 HOH A 29 329 42 HOH HOH . E 4 HOH A 30 330 12 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 125 HOH HOH . E 4 HOH A 33 333 24 HOH HOH . E 4 HOH A 34 334 89 HOH HOH . E 4 HOH A 35 335 158 HOH HOH . E 4 HOH A 36 336 98 HOH HOH . E 4 HOH A 37 337 149 HOH HOH . E 4 HOH A 38 338 114 HOH HOH . E 4 HOH A 39 339 91 HOH HOH . E 4 HOH A 40 340 39 HOH HOH . E 4 HOH A 41 341 6 HOH HOH . E 4 HOH A 42 342 50 HOH HOH . E 4 HOH A 43 343 45 HOH HOH . E 4 HOH A 44 344 2 HOH HOH . E 4 HOH A 45 345 23 HOH HOH . E 4 HOH A 46 346 94 HOH HOH . E 4 HOH A 47 347 95 HOH HOH . E 4 HOH A 48 348 121 HOH HOH . E 4 HOH A 49 349 139 HOH HOH . E 4 HOH A 50 350 107 HOH HOH . E 4 HOH A 51 351 37 HOH HOH . E 4 HOH A 52 352 30 HOH HOH . E 4 HOH A 53 353 129 HOH HOH . E 4 HOH A 54 354 102 HOH HOH . E 4 HOH A 55 355 43 HOH HOH . E 4 HOH A 56 356 76 HOH HOH . E 4 HOH A 57 357 96 HOH HOH . E 4 HOH A 58 358 46 HOH HOH . E 4 HOH A 59 359 62 HOH HOH . E 4 HOH A 60 360 97 HOH HOH . E 4 HOH A 61 361 33 HOH HOH . E 4 HOH A 62 362 10 HOH HOH . E 4 HOH A 63 363 1 HOH HOH . E 4 HOH A 64 364 56 HOH HOH . E 4 HOH A 65 365 70 HOH HOH . E 4 HOH A 66 366 8 HOH HOH . E 4 HOH A 67 367 141 HOH HOH . E 4 HOH A 68 368 64 HOH HOH . E 4 HOH A 69 369 28 HOH HOH . E 4 HOH A 70 370 34 HOH HOH . E 4 HOH A 71 371 61 HOH HOH . E 4 HOH A 72 372 154 HOH HOH . E 4 HOH A 73 373 40 HOH HOH . E 4 HOH A 74 374 87 HOH HOH . E 4 HOH A 75 375 110 HOH HOH . E 4 HOH A 76 376 60 HOH HOH . E 4 HOH A 77 377 51 HOH HOH . E 4 HOH A 78 378 109 HOH HOH . E 4 HOH A 79 379 18 HOH HOH . E 4 HOH A 80 380 47 HOH HOH . E 4 HOH A 81 381 53 HOH HOH . E 4 HOH A 82 382 32 HOH HOH . E 4 HOH A 83 383 4 HOH HOH . E 4 HOH A 84 384 122 HOH HOH . E 4 HOH A 85 385 126 HOH HOH . E 4 HOH A 86 386 83 HOH HOH . E 4 HOH A 87 387 26 HOH HOH . E 4 HOH A 88 388 52 HOH HOH . E 4 HOH A 89 389 159 HOH HOH . E 4 HOH A 90 390 99 HOH HOH . E 4 HOH A 91 391 13 HOH HOH . E 4 HOH A 92 392 54 HOH HOH . E 4 HOH A 93 393 153 HOH HOH . E 4 HOH A 94 394 101 HOH HOH . E 4 HOH A 95 395 3 HOH HOH . E 4 HOH A 96 396 57 HOH HOH . E 4 HOH A 97 397 131 HOH HOH . E 4 HOH A 98 398 93 HOH HOH . E 4 HOH A 99 399 90 HOH HOH . E 4 HOH A 100 400 132 HOH HOH . E 4 HOH A 101 401 86 HOH HOH . E 4 HOH A 102 402 20 HOH HOH . E 4 HOH A 103 403 146 HOH HOH . E 4 HOH A 104 404 115 HOH HOH . E 4 HOH A 105 405 38 HOH HOH . E 4 HOH A 106 406 36 HOH HOH . E 4 HOH A 107 407 79 HOH HOH . E 4 HOH A 108 408 49 HOH HOH . E 4 HOH A 109 409 58 HOH HOH . E 4 HOH A 110 410 135 HOH HOH . E 4 HOH A 111 411 84 HOH HOH . E 4 HOH A 112 412 112 HOH HOH . E 4 HOH A 113 413 21 HOH HOH . E 4 HOH A 114 414 92 HOH HOH . E 4 HOH A 115 415 88 HOH HOH . E 4 HOH A 116 416 140 HOH HOH . E 4 HOH A 117 417 145 HOH HOH . E 4 HOH A 118 418 156 HOH HOH . E 4 HOH A 119 419 80 HOH HOH . E 4 HOH A 120 420 100 HOH HOH . E 4 HOH A 121 421 65 HOH HOH . E 4 HOH A 122 422 73 HOH HOH . E 4 HOH A 123 423 117 HOH HOH . E 4 HOH A 124 424 72 HOH HOH . E 4 HOH A 125 425 118 HOH HOH . E 4 HOH A 126 426 124 HOH HOH . E 4 HOH A 127 427 130 HOH HOH . E 4 HOH A 128 428 27 HOH HOH . E 4 HOH A 129 429 11 HOH HOH . E 4 HOH A 130 430 150 HOH HOH . E 4 HOH A 131 431 134 HOH HOH . E 4 HOH A 132 432 151 HOH HOH . E 4 HOH A 133 433 103 HOH HOH . E 4 HOH A 134 434 161 HOH HOH . E 4 HOH A 135 435 82 HOH HOH . E 4 HOH A 136 436 48 HOH HOH . E 4 HOH A 137 437 78 HOH HOH . E 4 HOH A 138 438 138 HOH HOH . E 4 HOH A 139 439 67 HOH HOH . E 4 HOH A 140 440 116 HOH HOH . E 4 HOH A 141 441 147 HOH HOH . E 4 HOH A 142 442 157 HOH HOH . E 4 HOH A 143 443 123 HOH HOH . E 4 HOH A 144 444 68 HOH HOH . E 4 HOH A 145 445 162 HOH HOH . E 4 HOH A 146 446 106 HOH HOH . E 4 HOH A 147 447 128 HOH HOH . E 4 HOH A 148 448 113 HOH HOH . E 4 HOH A 149 449 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.987 31.273 -6.096 1 23.96 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 7.325 30.022 -5.326 1 19.46 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 5.65 31.936 -5.98 1 21.88 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 8.115 32.362 -5.752 1 28.53 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 9.469 31.939 -5.657 1 27.71 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 10.253 33.038 -4.979 1 29.27 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 10.054 32.929 -3.569 1 24.97 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 11.753 32.88 -5.158 1 32.72 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 12.195 33.449 -6.395 1 25.21 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 12.261 33.624 -3.946 1 33.75 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 12.062 35.012 -4.166 1 34.27 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 11.252 33.245 -2.875 1 28.84 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 11.705 32.057 -2.134 1 24.69 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 11.341 30.777 -2.356 1 28.33 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 11.954 29.938 -1.48 1 28.95 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 12.731 30.693 -0.671 1 30.11 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 13.645 30.462 0.473 1 27.76 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 13.885 29.221 0.972 1 34.78 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 14.247 31.544 1.019 1 34.74 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 14.032 32.79 0.56 1 30.35 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 13.222 33.077 -0.472 1 31.29 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 12.554 32.088 -1.11 1 31.26 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 7.329 31.194 -7.677 1 32.48 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 7.046 29.991 -8.689 1 30.71 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 7.485 30.407 -10.077 1 40.02 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 7.619 28.744 -8.104 1 24.54 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 5.42 29.914 -8.717 1 26.13 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 4.6 30.915 -9.324 1 21.84 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 3.346 30.316 -9.958 1 37.96 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 2.546 29.583 -9.015 1 41.77 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 2.427 31.378 -10.568 1 29.46 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 2.081 30.999 -11.902 1 30.62 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 1.134 31.279 -9.807 1 30.04 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 0.025 31.504 -10.686 1 31.62 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 1.175 29.844 -9.324 1 21.49 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 0.264 29.689 -8.19 1 32.25 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -0.74 28.807 -8.298 1 28.13 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -1.641 28.603 -7.256 1 33.75 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -2.763 27.596 -7.392 1 31.68 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -3.465 27.318 -6.411 1 20.34 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -2.964 27.039 -8.595 1 10.13 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -1.487 29.37 -6.108 1 39.88 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -0.446 30.292 -6.031 1 32.74 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 0.432 30.43 -7.093 1 35.26 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 13.269 36.04 -4.538 1 31.01 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 13.615 35.633 -5.958 1 27.5 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 12.579 37.388 -4.455 1 32.31 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 14.291 35.766 -3.471 1 20.1 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #