data_6PRB
#
_model_server_result.job_id            ITF66svVoawTVgEjEOc_6w 
_model_server_result.datetime_utc      '2025-02-23 10:33:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6prb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6PRB 
#
_exptl.entry_id    6PRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              544.602 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-1-[(1S)-1-cyclopropyl-6,7-dimethoxy-3,4-dihydrophthalazin-2(1H)-yl]-3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}prop-2-en-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PRB 
_cell.length_a            79.09 
_cell.length_b            79.09 
_cell.length_c            105.652 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H32 N6 O5' 
_chem_comp.formula_weight    544.602 
_chem_comp.id                R0Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-1-[(1S)-1-cyclopropyl-6,7-dimethoxy-3,4-dihydrophthalazin-2(1H)-yl]-3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}prop-2-en-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C40 O39 R0Y sing 433 n n 
C14 O13 R0Y sing 434 n n 
O13 C12 R0Y sing 435 n n 
O39 C15 R0Y sing 436 n n 
C12 C15 R0Y doub 437 n y 
C12 C11 R0Y sing 438 n y 
C15 C16 R0Y sing 439 n y 
C11 C10 R0Y doub 440 n y 
C16 C17 R0Y sing 441 n n 
C16 C38 R0Y doub 442 n y 
N21 C22 R0Y doub 443 n n 
N21 N20 R0Y sing 444 n n 
C18 C17 R0Y doub 445 e n 
C18 C19 R0Y sing 446 n n 
C10 C38 R0Y sing 447 n y 
C10 C09 R0Y sing 448 n n 
C04 N05 R0Y doub 449 n y 
C04 C03 R0Y sing 450 n y 
N05 C06 R0Y sing 451 n y 
C22 C23 R0Y sing 452 n n 
N20 C19 R0Y sing 453 n n 
N20 C25 R0Y sing 454 n n 
C19 O37 R0Y doub 455 n n 
C25 C24 R0Y sing 456 n n 
C25 C26 R0Y sing 457 n n 
C09 C03 R0Y sing 458 n n 
C03 C02 R0Y doub 459 n y 
C06 N07 R0Y sing 460 n n 
C06 N08 R0Y doub 461 n y 
C23 C24 R0Y doub 462 n y 
C23 C36 R0Y sing 463 n y 
C24 C29 R0Y sing 464 n y 
C36 C33 R0Y doub 465 n y 
C02 N08 R0Y sing 466 n y 
C02 N01 R0Y sing 467 n n 
C26 C27 R0Y sing 468 n n 
C26 C28 R0Y sing 469 n n 
C27 C28 R0Y sing 470 n n 
C29 C30 R0Y doub 471 n y 
C33 C30 R0Y sing 472 n y 
C33 O34 R0Y sing 473 n n 
C30 O31 R0Y sing 474 n n 
O34 C35 R0Y sing 475 n n 
O31 C32 R0Y sing 476 n n 
C04 H1 R0Y sing 477 n n 
C09 H2 R0Y sing 478 n n 
C09 H3 R0Y sing 479 n n 
C11 H4 R0Y sing 480 n n 
C14 H5 R0Y sing 481 n n 
C14 H6 R0Y sing 482 n n 
C14 H7 R0Y sing 483 n n 
C17 H8 R0Y sing 484 n n 
C18 H9 R0Y sing 485 n n 
C22 H10 R0Y sing 486 n n 
C25 H12 R0Y sing 487 n n 
C29 H13 R0Y sing 488 n n 
C32 H14 R0Y sing 489 n n 
C32 H15 R0Y sing 490 n n 
C32 H16 R0Y sing 491 n n 
C35 H17 R0Y sing 492 n n 
C35 H18 R0Y sing 493 n n 
C35 H19 R0Y sing 494 n n 
C36 H20 R0Y sing 495 n n 
C38 H21 R0Y sing 496 n n 
C40 H22 R0Y sing 497 n n 
C40 H23 R0Y sing 498 n n 
C40 H24 R0Y sing 499 n n 
N01 H25 R0Y sing 500 n n 
N01 H26 R0Y sing 501 n n 
N07 H27 R0Y sing 502 n n 
N07 H28 R0Y sing 503 n n 
C26 H30 R0Y sing 504 n n 
C27 H31 R0Y sing 505 n n 
C27 H32 R0Y sing 506 n n 
C28 H33 R0Y sing 507 n n 
C28 H34 R0Y sing 508 n n 
#
_atom_sites.entry_id                     6PRB 
_atom_sites.fract_transf_matrix[1][1]    0.012644 
_atom_sites.fract_transf_matrix[1][2]    0.0073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R0Y A 1 301 301 R0Y 004 . 
C 3 OWM A 1 302 302 OWM LIG . 
D 4 GOL A 1 303 501 GOL GOL . 
E 5 NAP A 1 304 1 NAP NAP . 
F 6 HOH A 1 401 24 HOH HOH . 
F 6 HOH A 2 402 1 HOH HOH . 
F 6 HOH A 3 403 73 HOH HOH . 
F 6 HOH A 4 404 75 HOH HOH . 
F 6 HOH A 5 405 111 HOH HOH . 
F 6 HOH A 6 406 69 HOH HOH . 
F 6 HOH A 7 407 49 HOH HOH . 
F 6 HOH A 8 408 38 HOH HOH . 
F 6 HOH A 9 409 11 HOH HOH . 
F 6 HOH A 10 410 71 HOH HOH . 
F 6 HOH A 11 411 26 HOH HOH . 
F 6 HOH A 12 412 46 HOH HOH . 
F 6 HOH A 13 413 81 HOH HOH . 
F 6 HOH A 14 414 68 HOH HOH . 
F 6 HOH A 15 415 25 HOH HOH . 
F 6 HOH A 16 416 95 HOH HOH . 
F 6 HOH A 17 417 84 HOH HOH . 
F 6 HOH A 18 418 64 HOH HOH . 
F 6 HOH A 19 419 33 HOH HOH . 
F 6 HOH A 20 420 7 HOH HOH . 
F 6 HOH A 21 421 88 HOH HOH . 
F 6 HOH A 22 422 91 HOH HOH . 
F 6 HOH A 23 423 28 HOH HOH . 
F 6 HOH A 24 424 44 HOH HOH . 
F 6 HOH A 25 425 14 HOH HOH . 
F 6 HOH A 26 426 5 HOH HOH . 
F 6 HOH A 27 427 93 HOH HOH . 
F 6 HOH A 28 428 99 HOH HOH . 
F 6 HOH A 29 429 138 HOH HOH . 
F 6 HOH A 30 430 41 HOH HOH . 
F 6 HOH A 31 431 18 HOH HOH . 
F 6 HOH A 32 432 6 HOH HOH . 
F 6 HOH A 33 433 94 HOH HOH . 
F 6 HOH A 34 434 3 HOH HOH . 
F 6 HOH A 35 435 29 HOH HOH . 
F 6 HOH A 36 436 59 HOH HOH . 
F 6 HOH A 37 437 30 HOH HOH . 
F 6 HOH A 38 438 34 HOH HOH . 
F 6 HOH A 39 439 124 HOH HOH . 
F 6 HOH A 40 440 2 HOH HOH . 
F 6 HOH A 41 441 22 HOH HOH . 
F 6 HOH A 42 442 67 HOH HOH . 
F 6 HOH A 43 443 98 HOH HOH . 
F 6 HOH A 44 444 47 HOH HOH . 
F 6 HOH A 45 445 15 HOH HOH . 
F 6 HOH A 46 446 55 HOH HOH . 
F 6 HOH A 47 447 32 HOH HOH . 
F 6 HOH A 48 448 35 HOH HOH . 
F 6 HOH A 49 449 90 HOH HOH . 
F 6 HOH A 50 450 113 HOH HOH . 
F 6 HOH A 51 451 20 HOH HOH . 
F 6 HOH A 52 452 103 HOH HOH . 
F 6 HOH A 53 453 4 HOH HOH . 
F 6 HOH A 54 454 39 HOH HOH . 
F 6 HOH A 55 455 43 HOH HOH . 
F 6 HOH A 56 456 128 HOH HOH . 
F 6 HOH A 57 457 80 HOH HOH . 
F 6 HOH A 58 458 50 HOH HOH . 
F 6 HOH A 59 459 21 HOH HOH . 
F 6 HOH A 60 460 139 HOH HOH . 
F 6 HOH A 61 461 10 HOH HOH . 
F 6 HOH A 62 462 114 HOH HOH . 
F 6 HOH A 63 463 57 HOH HOH . 
F 6 HOH A 64 464 120 HOH HOH . 
F 6 HOH A 65 465 17 HOH HOH . 
F 6 HOH A 66 466 36 HOH HOH . 
F 6 HOH A 67 467 83 HOH HOH . 
F 6 HOH A 68 468 54 HOH HOH . 
F 6 HOH A 69 469 16 HOH HOH . 
F 6 HOH A 70 470 12 HOH HOH . 
F 6 HOH A 71 471 27 HOH HOH . 
F 6 HOH A 72 472 135 HOH HOH . 
F 6 HOH A 73 473 92 HOH HOH . 
F 6 HOH A 74 474 40 HOH HOH . 
F 6 HOH A 75 475 89 HOH HOH . 
F 6 HOH A 76 476 130 HOH HOH . 
F 6 HOH A 77 477 52 HOH HOH . 
F 6 HOH A 78 478 66 HOH HOH . 
F 6 HOH A 79 479 141 HOH HOH . 
F 6 HOH A 80 480 72 HOH HOH . 
F 6 HOH A 81 481 62 HOH HOH . 
F 6 HOH A 82 482 48 HOH HOH . 
F 6 HOH A 83 483 82 HOH HOH . 
F 6 HOH A 84 484 31 HOH HOH . 
F 6 HOH A 85 485 102 HOH HOH . 
F 6 HOH A 86 486 107 HOH HOH . 
F 6 HOH A 87 487 51 HOH HOH . 
F 6 HOH A 88 488 100 HOH HOH . 
F 6 HOH A 89 489 133 HOH HOH . 
F 6 HOH A 90 490 116 HOH HOH . 
F 6 HOH A 91 491 112 HOH HOH . 
F 6 HOH A 92 492 125 HOH HOH . 
F 6 HOH A 93 493 42 HOH HOH . 
F 6 HOH A 94 494 45 HOH HOH . 
F 6 HOH A 95 495 63 HOH HOH . 
F 6 HOH A 96 496 134 HOH HOH . 
F 6 HOH A 97 497 123 HOH HOH . 
F 6 HOH A 98 498 121 HOH HOH . 
F 6 HOH A 99 499 129 HOH HOH . 
F 6 HOH A 100 500 79 HOH HOH . 
F 6 HOH A 101 501 118 HOH HOH . 
F 6 HOH A 102 502 140 HOH HOH . 
F 6 HOH A 103 503 87 HOH HOH . 
F 6 HOH A 104 504 9 HOH HOH . 
F 6 HOH A 105 505 137 HOH HOH . 
F 6 HOH A 106 506 131 HOH HOH . 
F 6 HOH A 107 507 104 HOH HOH . 
F 6 HOH A 108 508 86 HOH HOH . 
F 6 HOH A 109 509 115 HOH HOH . 
F 6 HOH A 110 510 117 HOH HOH . 
F 6 HOH A 111 511 23 HOH HOH . 
F 6 HOH A 112 512 85 HOH HOH . 
F 6 HOH A 113 513 65 HOH HOH . 
F 6 HOH A 114 514 60 HOH HOH . 
F 6 HOH A 115 515 61 HOH HOH . 
F 6 HOH A 116 516 122 HOH HOH . 
F 6 HOH A 117 517 53 HOH HOH . 
F 6 HOH A 118 518 96 HOH HOH . 
F 6 HOH A 119 519 101 HOH HOH . 
F 6 HOH A 120 520 132 HOH HOH . 
F 6 HOH A 121 521 119 HOH HOH . 
F 6 HOH A 122 522 126 HOH HOH . 
F 6 HOH A 123 523 77 HOH HOH . 
F 6 HOH A 124 524 110 HOH HOH . 
F 6 HOH A 125 525 58 HOH HOH . 
F 6 HOH A 126 526 136 HOH HOH . 
F 6 HOH A 127 527 70 HOH HOH . 
F 6 HOH A 128 528 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 R0Y . B . B 2 -4.499 28.744 -3.763 0.41 20.13 ? C02 R0Y 301 A 1 
HETATM 2 C C03 R0Y . B . B 2 -4.658 29.78 -4.726 0.41 23.2 ? C03 R0Y 301 A 1 
HETATM 3 C C04 R0Y . B . B 2 -5.784 29.694 -5.582 0.41 22.23 ? C04 R0Y 301 A 1 
HETATM 4 C C06 R0Y . B . B 2 -6.45 27.746 -4.488 0.41 17.28 ? C06 R0Y 301 A 1 
HETATM 5 C C09 R0Y . B . B 2 -3.589 30.896 -4.788 0.41 31.77 ? C09 R0Y 301 A 1 
HETATM 6 C C10 R0Y . B . B 2 -4.059 32.104 -5.624 0.41 24.29 ? C10 R0Y 301 A 1 
HETATM 7 C C11 R0Y . B . B 2 -3.321 32.507 -6.746 0.41 20.52 ? C11 R0Y 301 A 1 
HETATM 8 C C12 R0Y . B . B 2 -3.755 33.61 -7.503 0.41 21.64 ? C12 R0Y 301 A 1 
HETATM 9 C C14 R0Y . B . B 2 -1.799 33.523 -8.887 0.41 21.43 ? C14 R0Y 301 A 1 
HETATM 10 C C15 R0Y . B . B 2 -4.909 34.299 -7.128 0.41 30.29 ? C15 R0Y 301 A 1 
HETATM 11 C C16 R0Y . B . B 2 -5.636 33.886 -6.006 0.41 26.69 ? C16 R0Y 301 A 1 
HETATM 12 C C17 R0Y . B . B 2 -6.904 34.595 -5.546 0.41 36.26 ? C17 R0Y 301 A 1 
HETATM 13 C C18 R0Y . B . B 2 -7.023 35.965 -5.644 0.41 35.11 ? C18 R0Y 301 A 1 
HETATM 14 C C19 R0Y . B . B 2 -8.345 36.549 -5.128 0.41 43.91 ? C19 R0Y 301 A 1 
HETATM 15 C C22 R0Y . B . B 2 -7.262 40.011 -5.393 0.41 52.92 ? C22 R0Y 301 A 1 
HETATM 16 C C23 R0Y . B . B 2 -8.268 40.632 -4.471 0.41 36.65 ? C23 R0Y 301 A 1 
HETATM 17 C C24 R0Y . B . B 2 -9.445 40.001 -4.216 0.41 49.4 ? C24 R0Y 301 A 1 
HETATM 18 C C25 R0Y . B . B 2 -9.827 38.595 -4.793 0.41 40.48 ? C25 R0Y 301 A 1 
HETATM 19 C C29 R0Y . B . B 2 -10.382 40.62 -3.321 0.41 56.32 ? C29 R0Y 301 A 1 
HETATM 20 C C30 R0Y . B . B 2 -10.111 41.863 -2.746 0.41 57.56 ? C30 R0Y 301 A 1 
HETATM 21 C C32 R0Y . B . B 2 -12.169 41.535 -1.544 0.41 34.71 ? C32 R0Y 301 A 1 
HETATM 22 C C33 R0Y . B . B 2 -8.904 42.527 -3.013 0.41 52.99 ? C33 R0Y 301 A 1 
HETATM 23 C C35 R0Y . B . B 2 -7.35 44.127 -2.076 0.41 67.93 ? C35 R0Y 301 A 1 
HETATM 24 C C36 R0Y . B . B 2 -7.965 41.931 -3.878 0.41 50.51 ? C36 R0Y 301 A 1 
HETATM 25 C C38 R0Y . B . B 2 -5.212 32.796 -5.24 0.41 24.69 ? C38 R0Y 301 A 1 
HETATM 26 C C40 R0Y . B . B 2 -6.246 35.102 -8.949 0.41 18.56 ? C40 R0Y 301 A 1 
HETATM 27 N N01 R0Y . B . B 2 -3.38 28.777 -2.877 0.41 17.71 ? N01 R0Y 301 A 1 
HETATM 28 N N05 R0Y . B . B 2 -6.65 28.66 -5.432 0.41 22.72 ? N05 R0Y 301 A 1 
HETATM 29 N N07 R0Y . B . B 2 -7.38 26.676 -4.352 0.41 16.74 ? N07 R0Y 301 A 1 
HETATM 30 N N08 R0Y . B . B 2 -5.405 27.766 -3.668 0.41 20.67 ? N08 R0Y 301 A 1 
HETATM 31 N N20 R0Y . B . B 2 -8.581 37.969 -5.291 0.41 56.62 ? N20 R0Y 301 A 1 
HETATM 32 N N21 R0Y . B . B 2 -7.571 38.741 -5.925 0.41 52.59 ? N21 R0Y 301 A 1 
HETATM 33 O O13 R0Y . B . B 2 -3.081 34.077 -8.653 0.41 23.41 ? O13 R0Y 301 A 1 
HETATM 34 O O31 R0Y . B . B 2 -11.101 42.421 -1.874 0.41 47.81 ? O31 R0Y 301 A 1 
HETATM 35 O O34 R0Y . B . B 2 -8.69 43.794 -2.398 0.41 64.25 ? O34 R0Y 301 A 1 
HETATM 36 O O37 R0Y . B . B 2 -9.139 35.818 -4.586 0.41 32.49 ? O37 R0Y 301 A 1 
HETATM 37 O O39 R0Y . B . B 2 -5.298 35.396 -7.934 0.41 27.75 ? O39 R0Y 301 A 1 
HETATM 38 C C26 R0Y . B . B 2 -10.883 38.045 -3.757 0.41 42.19 ? C26 R0Y 301 A 1 
HETATM 39 C C27 R0Y . B . B 2 -11.727 36.773 -3.741 0.41 32.51 ? C27 R0Y 301 A 1 
HETATM 40 C C28 R0Y . B . B 2 -12.408 38.12 -3.708 0.41 47.92 ? C28 R0Y 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#