data_6PRB
#
_model_server_result.job_id            '_vxTeohnMlmaZcJ6lbPLNQ' 
_model_server_result.datetime_utc      '2025-02-23 10:25:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6prb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    6PRB 
#
_exptl.entry_id    6PRB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PRB 
_cell.length_a            79.09 
_cell.length_b            79.09 
_cell.length_c            105.652 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PRB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6PRB 
_atom_sites.fract_transf_matrix[1][1]    0.012644 
_atom_sites.fract_transf_matrix[1][2]    0.0073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R0Y A 1 301 301 R0Y 004 . 
C 3 OWM A 1 302 302 OWM LIG . 
D 4 GOL A 1 303 501 GOL GOL . 
E 5 NAP A 1 304 1 NAP NAP . 
F 6 HOH A 1 401 24 HOH HOH . 
F 6 HOH A 2 402 1 HOH HOH . 
F 6 HOH A 3 403 73 HOH HOH . 
F 6 HOH A 4 404 75 HOH HOH . 
F 6 HOH A 5 405 111 HOH HOH . 
F 6 HOH A 6 406 69 HOH HOH . 
F 6 HOH A 7 407 49 HOH HOH . 
F 6 HOH A 8 408 38 HOH HOH . 
F 6 HOH A 9 409 11 HOH HOH . 
F 6 HOH A 10 410 71 HOH HOH . 
F 6 HOH A 11 411 26 HOH HOH . 
F 6 HOH A 12 412 46 HOH HOH . 
F 6 HOH A 13 413 81 HOH HOH . 
F 6 HOH A 14 414 68 HOH HOH . 
F 6 HOH A 15 415 25 HOH HOH . 
F 6 HOH A 16 416 95 HOH HOH . 
F 6 HOH A 17 417 84 HOH HOH . 
F 6 HOH A 18 418 64 HOH HOH . 
F 6 HOH A 19 419 33 HOH HOH . 
F 6 HOH A 20 420 7 HOH HOH . 
F 6 HOH A 21 421 88 HOH HOH . 
F 6 HOH A 22 422 91 HOH HOH . 
F 6 HOH A 23 423 28 HOH HOH . 
F 6 HOH A 24 424 44 HOH HOH . 
F 6 HOH A 25 425 14 HOH HOH . 
F 6 HOH A 26 426 5 HOH HOH . 
F 6 HOH A 27 427 93 HOH HOH . 
F 6 HOH A 28 428 99 HOH HOH . 
F 6 HOH A 29 429 138 HOH HOH . 
F 6 HOH A 30 430 41 HOH HOH . 
F 6 HOH A 31 431 18 HOH HOH . 
F 6 HOH A 32 432 6 HOH HOH . 
F 6 HOH A 33 433 94 HOH HOH . 
F 6 HOH A 34 434 3 HOH HOH . 
F 6 HOH A 35 435 29 HOH HOH . 
F 6 HOH A 36 436 59 HOH HOH . 
F 6 HOH A 37 437 30 HOH HOH . 
F 6 HOH A 38 438 34 HOH HOH . 
F 6 HOH A 39 439 124 HOH HOH . 
F 6 HOH A 40 440 2 HOH HOH . 
F 6 HOH A 41 441 22 HOH HOH . 
F 6 HOH A 42 442 67 HOH HOH . 
F 6 HOH A 43 443 98 HOH HOH . 
F 6 HOH A 44 444 47 HOH HOH . 
F 6 HOH A 45 445 15 HOH HOH . 
F 6 HOH A 46 446 55 HOH HOH . 
F 6 HOH A 47 447 32 HOH HOH . 
F 6 HOH A 48 448 35 HOH HOH . 
F 6 HOH A 49 449 90 HOH HOH . 
F 6 HOH A 50 450 113 HOH HOH . 
F 6 HOH A 51 451 20 HOH HOH . 
F 6 HOH A 52 452 103 HOH HOH . 
F 6 HOH A 53 453 4 HOH HOH . 
F 6 HOH A 54 454 39 HOH HOH . 
F 6 HOH A 55 455 43 HOH HOH . 
F 6 HOH A 56 456 128 HOH HOH . 
F 6 HOH A 57 457 80 HOH HOH . 
F 6 HOH A 58 458 50 HOH HOH . 
F 6 HOH A 59 459 21 HOH HOH . 
F 6 HOH A 60 460 139 HOH HOH . 
F 6 HOH A 61 461 10 HOH HOH . 
F 6 HOH A 62 462 114 HOH HOH . 
F 6 HOH A 63 463 57 HOH HOH . 
F 6 HOH A 64 464 120 HOH HOH . 
F 6 HOH A 65 465 17 HOH HOH . 
F 6 HOH A 66 466 36 HOH HOH . 
F 6 HOH A 67 467 83 HOH HOH . 
F 6 HOH A 68 468 54 HOH HOH . 
F 6 HOH A 69 469 16 HOH HOH . 
F 6 HOH A 70 470 12 HOH HOH . 
F 6 HOH A 71 471 27 HOH HOH . 
F 6 HOH A 72 472 135 HOH HOH . 
F 6 HOH A 73 473 92 HOH HOH . 
F 6 HOH A 74 474 40 HOH HOH . 
F 6 HOH A 75 475 89 HOH HOH . 
F 6 HOH A 76 476 130 HOH HOH . 
F 6 HOH A 77 477 52 HOH HOH . 
F 6 HOH A 78 478 66 HOH HOH . 
F 6 HOH A 79 479 141 HOH HOH . 
F 6 HOH A 80 480 72 HOH HOH . 
F 6 HOH A 81 481 62 HOH HOH . 
F 6 HOH A 82 482 48 HOH HOH . 
F 6 HOH A 83 483 82 HOH HOH . 
F 6 HOH A 84 484 31 HOH HOH . 
F 6 HOH A 85 485 102 HOH HOH . 
F 6 HOH A 86 486 107 HOH HOH . 
F 6 HOH A 87 487 51 HOH HOH . 
F 6 HOH A 88 488 100 HOH HOH . 
F 6 HOH A 89 489 133 HOH HOH . 
F 6 HOH A 90 490 116 HOH HOH . 
F 6 HOH A 91 491 112 HOH HOH . 
F 6 HOH A 92 492 125 HOH HOH . 
F 6 HOH A 93 493 42 HOH HOH . 
F 6 HOH A 94 494 45 HOH HOH . 
F 6 HOH A 95 495 63 HOH HOH . 
F 6 HOH A 96 496 134 HOH HOH . 
F 6 HOH A 97 497 123 HOH HOH . 
F 6 HOH A 98 498 121 HOH HOH . 
F 6 HOH A 99 499 129 HOH HOH . 
F 6 HOH A 100 500 79 HOH HOH . 
F 6 HOH A 101 501 118 HOH HOH . 
F 6 HOH A 102 502 140 HOH HOH . 
F 6 HOH A 103 503 87 HOH HOH . 
F 6 HOH A 104 504 9 HOH HOH . 
F 6 HOH A 105 505 137 HOH HOH . 
F 6 HOH A 106 506 131 HOH HOH . 
F 6 HOH A 107 507 104 HOH HOH . 
F 6 HOH A 108 508 86 HOH HOH . 
F 6 HOH A 109 509 115 HOH HOH . 
F 6 HOH A 110 510 117 HOH HOH . 
F 6 HOH A 111 511 23 HOH HOH . 
F 6 HOH A 112 512 85 HOH HOH . 
F 6 HOH A 113 513 65 HOH HOH . 
F 6 HOH A 114 514 60 HOH HOH . 
F 6 HOH A 115 515 61 HOH HOH . 
F 6 HOH A 116 516 122 HOH HOH . 
F 6 HOH A 117 517 53 HOH HOH . 
F 6 HOH A 118 518 96 HOH HOH . 
F 6 HOH A 119 519 101 HOH HOH . 
F 6 HOH A 120 520 132 HOH HOH . 
F 6 HOH A 121 521 119 HOH HOH . 
F 6 HOH A 122 522 126 HOH HOH . 
F 6 HOH A 123 523 77 HOH HOH . 
F 6 HOH A 124 524 110 HOH HOH . 
F 6 HOH A 125 525 58 HOH HOH . 
F 6 HOH A 126 526 136 HOH HOH . 
F 6 HOH A 127 527 70 HOH HOH . 
F 6 HOH A 128 528 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 5 6.622 31.524 -6.13 1 25.89 ? PA NAP 304 A 1 
HETATM 2 O O1A NAP . . . E 5 6.918 30.237 -5.414 1 22.78 ? O1A NAP 304 A 1 
HETATM 3 O O2A NAP . . . E 5 5.339 32.26 -5.924 1 24.44 ? O2A NAP 304 A 1 
HETATM 4 O O5B NAP . . . E 5 7.762 32.608 -5.826 1 26.63 ? O5B NAP 304 A 1 
HETATM 5 C C5B NAP . . . E 5 9.129 32.275 -5.936 1 23.72 ? C5B NAP 304 A 1 
HETATM 6 C C4B NAP . . . E 5 9.902 33.308 -5.161 1 24.05 ? C4B NAP 304 A 1 
HETATM 7 O O4B NAP . . . E 5 9.679 33.156 -3.774 1 26.23 ? O4B NAP 304 A 1 
HETATM 8 C C3B NAP . . . E 5 11.409 33.143 -5.274 1 25.77 ? C3B NAP 304 A 1 
HETATM 9 O O3B NAP . . . E 5 11.857 33.668 -6.513 1 27.98 ? O3B NAP 304 A 1 
HETATM 10 C C2B NAP . . . E 5 11.892 33.925 -4.084 1 30.86 ? C2B NAP 304 A 1 
HETATM 11 O O2B NAP . . . E 5 11.708 35.327 -4.294 1 30.02 ? O2B NAP 304 A 1 
HETATM 12 C C1B NAP . . . E 5 10.848 33.528 -3.057 1 25.49 ? C1B NAP 304 A 1 
HETATM 13 N N9A NAP . . . E 5 11.361 32.386 -2.313 1 25.21 ? N9A NAP 304 A 1 
HETATM 14 C C8A NAP . . . E 5 10.983 31.093 -2.47 1 32.04 ? C8A NAP 304 A 1 
HETATM 15 N N7A NAP . . . E 5 11.655 30.303 -1.599 1 26.62 ? N7A NAP 304 A 1 
HETATM 16 C C5A NAP . . . E 5 12.477 31.101 -0.889 1 28.95 ? C5A NAP 304 A 1 
HETATM 17 C C6A NAP . . . E 5 13.455 30.917 0.203 1 32.98 ? C6A NAP 304 A 1 
HETATM 18 N N6A NAP . . . E 5 13.709 29.683 0.696 1 31.17 ? N6A NAP 304 A 1 
HETATM 19 N N1A NAP . . . E 5 14.088 32.027 0.667 1 31.71 ? N1A NAP 304 A 1 
HETATM 20 C C2A NAP . . . E 5 13.847 33.252 0.169 1 31.72 ? C2A NAP 304 A 1 
HETATM 21 N N3A NAP . . . E 5 12.953 33.498 -0.814 1 30.85 ? N3A NAP 304 A 1 
HETATM 22 C C4A NAP . . . E 5 12.266 32.472 -1.364 1 27.24 ? C4A NAP 304 A 1 
HETATM 23 O O3 NAP . . . E 5 6.905 31.367 -7.716 1 25.47 ? O3 NAP 304 A 1 
HETATM 24 P PN NAP . . . E 5 6.825 30.081 -8.684 1 29.72 ? PN NAP 304 A 1 
HETATM 25 O O1N NAP . . . E 5 7.425 28.836 -8.098 1 27.37 ? O1N NAP 304 A 1 
HETATM 26 O O2N NAP . . . E 5 7.266 30.525 -10.05 1 29.14 ? O2N NAP 304 A 1 
HETATM 27 O O5D NAP . . . E 5 5.213 29.872 -8.752 1 24.08 ? O5D NAP 304 A 1 
HETATM 28 C C5D NAP . . . E 5 4.384 30.864 -9.402 1 22.85 ? C5D NAP 304 A 1 
HETATM 29 C C4D NAP . . . E 5 3.148 30.261 -10.079 1 33.81 ? C4D NAP 304 A 1 
HETATM 30 O O4D NAP . . . E 5 2.274 29.538 -9.174 1 25.64 ? O4D NAP 304 A 1 
HETATM 31 C C3D NAP . . . E 5 2.287 31.347 -10.739 1 25.62 ? C3D NAP 304 A 1 
HETATM 32 O O3D NAP . . . E 5 1.939 30.958 -12.083 1 24.25 ? O3D NAP 304 A 1 
HETATM 33 C C2D NAP . . . E 5 1.002 31.376 -9.963 1 25.19 ? C2D NAP 304 A 1 
HETATM 34 O O2D NAP . . . E 5 -0.075 31.613 -10.873 1 26.78 ? O2D NAP 304 A 1 
HETATM 35 C C1D NAP . . . E 5 0.916 29.96 -9.405 1 22.74 ? C1D NAP 304 A 1 
HETATM 36 N N1N NAP . . . E 5 0.143 29.716 -8.175 1 25.21 ? N1N NAP 304 A 1 
HETATM 37 C C2N NAP . . . E 5 -0.843 28.802 -8.248 1 20.95 ? C2N NAP 304 A 1 
HETATM 38 C C3N NAP . . . E 5 -1.58 28.442 -7.133 1 25.15 ? C3N NAP 304 A 1 
HETATM 39 C C7N NAP . . . E 5 -2.695 27.447 -7.276 1 21.72 ? C7N NAP 304 A 1 
HETATM 40 O O7N NAP . . . E 5 -3.109 27.12 -8.389 1 24.55 ? O7N NAP 304 A 1 
HETATM 41 N N7N NAP . . . E 5 -3.197 26.97 -6.175 1 19.22 ? N7N NAP 304 A 1 
HETATM 42 C C4N NAP . . . E 5 -1.267 29.009 -5.903 1 25.71 ? C4N NAP 304 A 1 
HETATM 43 C C5N NAP . . . E 5 -0.246 29.977 -5.851 1 27.06 ? C5N NAP 304 A 1 
HETATM 44 C C6N NAP . . . E 5 0.478 30.291 -7 1 24.5 ? C6N NAP 304 A 1 
HETATM 45 P P2B NAP . . . E 5 12.916 36.36 -4.716 1 28.24 ? P2B NAP 304 A 1 
HETATM 46 O O1X NAP . . . E 5 13.318 35.828 -6.051 1 24.48 ? O1X NAP 304 A 1 
HETATM 47 O O2X NAP . . . E 5 12.142 37.657 -4.734 1 29.59 ? O2X NAP 304 A 1 
HETATM 48 O O3X NAP . . . E 5 13.927 36.186 -3.598 1 24.06 ? O3X NAP 304 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#