data_6PRD
#
_model_server_result.job_id            sjJfI5Py6o35pEXxjiN16w 
_model_server_result.datetime_utc      '2025-02-23 10:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6prd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    6PRD 
#
_exptl.entry_id    6PRD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              614.691 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-6,7-dimethoxy-1-(4-methoxyphenyl)-3,4-dihydrophthalazin-2(1H)-yl]propan-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6PRD 
_cell.length_a            79.062 
_cell.length_b            79.062 
_cell.length_c            105.511 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H38 N6 O6' 
_chem_comp.formula_weight    614.691 
_chem_comp.id                OWG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-{5-[(2,4-diaminopyrimidin-5-yl)methyl]-2,3-dimethoxyphenyl}-1-[(1S)-6,7-dimethoxy-1-(4-methoxyphenyl)-3,4-dihydrophthalazin-2(1H)-yl]propan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 O11 OWG sing 317 n n 
C09 O08 OWG sing 318 n n 
O08 C07 OWG sing 319 n n 
O11 C10 OWG sing 320 n n 
C07 C10 OWG doub 321 n y 
C07 C06 OWG sing 322 n y 
C10 C13 OWG sing 323 n y 
C80 O79 OWG sing 324 n n 
C06 C05 OWG doub 325 n y 
C78 C72 OWG doub 326 n y 
C78 C84 OWG sing 327 n y 
C13 C14 OWG sing 328 n n 
C13 C31 OWG doub 329 n y 
C14 C15 OWG sing 330 n n 
O79 C84 OWG sing 331 n n 
C72 C69 OWG sing 332 n y 
C05 C31 OWG sing 333 n y 
C05 C04 OWG sing 334 n n 
O30 C16 OWG doub 335 n n 
C32 N33 OWG doub 336 n y 
C32 C03 OWG sing 337 n y 
C84 C81 OWG doub 338 n y 
N33 C34 OWG sing 339 n y 
C16 C15 OWG sing 340 n n 
C16 N17 OWG sing 341 n n 
C04 C03 OWG sing 342 n n 
C03 C02 OWG doub 343 n y 
C34 N35 OWG sing 344 n n 
C34 N36 OWG doub 345 n y 
C69 C20 OWG sing 346 n n 
C69 C75 OWG doub 347 n y 
C81 C75 OWG sing 348 n y 
C20 N17 OWG sing 349 n n 
C20 C24 OWG sing 350 n n 
N17 N18 OWG sing 351 n n 
C02 N36 OWG sing 352 n y 
C02 N01 OWG sing 353 n n 
N18 C19 OWG sing 354 n n 
C29 C24 OWG doub 355 n y 
C29 C28 OWG sing 356 n y 
C24 C25 OWG sing 357 n y 
C19 C25 OWG sing 358 n n 
C25 C26 OWG doub 359 n y 
C46 O45 OWG sing 360 n n 
C28 O45 OWG sing 361 n n 
C28 C27 OWG doub 362 n y 
C26 C27 OWG sing 363 n y 
C27 O47 OWG sing 364 n n 
O47 C48 OWG sing 365 n n 
C12 H1 OWG sing 366 n n 
C12 H2 OWG sing 367 n n 
C12 H3 OWG sing 368 n n 
C04 H4 OWG sing 369 n n 
C04 H5 OWG sing 370 n n 
C06 H6 OWG sing 371 n n 
C09 H7 OWG sing 372 n n 
C09 H8 OWG sing 373 n n 
C09 H9 OWG sing 374 n n 
C14 H10 OWG sing 375 n n 
C14 H11 OWG sing 376 n n 
C15 H12 OWG sing 377 n n 
C15 H13 OWG sing 378 n n 
C19 H14 OWG sing 379 n n 
C19 H15 OWG sing 380 n n 
C20 H16 OWG sing 381 n n 
C26 H17 OWG sing 382 n n 
C29 H18 OWG sing 383 n n 
C31 H19 OWG sing 384 n n 
C32 H20 OWG sing 385 n n 
C46 H21 OWG sing 386 n n 
C46 H22 OWG sing 387 n n 
C46 H23 OWG sing 388 n n 
C48 H24 OWG sing 389 n n 
C48 H25 OWG sing 390 n n 
C48 H26 OWG sing 391 n n 
C72 H27 OWG sing 392 n n 
C75 H28 OWG sing 393 n n 
C78 H29 OWG sing 394 n n 
C80 H30 OWG sing 395 n n 
C80 H31 OWG sing 396 n n 
C80 H32 OWG sing 397 n n 
C81 H33 OWG sing 398 n n 
N01 H34 OWG sing 399 n n 
N01 H35 OWG sing 400 n n 
N18 H36 OWG sing 401 n n 
N35 H37 OWG sing 402 n n 
N35 H38 OWG sing 403 n n 
#
_atom_sites.entry_id                     6PRD 
_atom_sites.fract_transf_matrix[1][1]    0.012648 
_atom_sites.fract_transf_matrix[1][2]    0.007303 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009478 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 401 GOL GOL . 
C 2 GOL A 1 402 501 GOL GOL . 
D 3 OWG A 1 403 301 OWG 007 . 
E 4 NAP A 1 404 201 NAP NAP . 
F 5 HOH A 1 501 67 HOH HOH . 
F 5 HOH A 2 502 136 HOH HOH . 
F 5 HOH A 3 503 70 HOH HOH . 
F 5 HOH A 4 504 85 HOH HOH . 
F 5 HOH A 5 505 24 HOH HOH . 
F 5 HOH A 6 506 61 HOH HOH . 
F 5 HOH A 7 507 37 HOH HOH . 
F 5 HOH A 8 508 109 HOH HOH . 
F 5 HOH A 9 509 71 HOH HOH . 
F 5 HOH A 10 510 75 HOH HOH . 
F 5 HOH A 11 511 39 HOH HOH . 
F 5 HOH A 12 512 10 HOH HOH . 
F 5 HOH A 13 513 108 HOH HOH . 
F 5 HOH A 14 514 1 HOH HOH . 
F 5 HOH A 15 515 59 HOH HOH . 
F 5 HOH A 16 516 2 HOH HOH . 
F 5 HOH A 17 517 23 HOH HOH . 
F 5 HOH A 18 518 51 HOH HOH . 
F 5 HOH A 19 519 6 HOH HOH . 
F 5 HOH A 20 520 41 HOH HOH . 
F 5 HOH A 21 521 8 HOH HOH . 
F 5 HOH A 22 522 27 HOH HOH . 
F 5 HOH A 23 523 9 HOH HOH . 
F 5 HOH A 24 524 5 HOH HOH . 
F 5 HOH A 25 525 81 HOH HOH . 
F 5 HOH A 26 526 46 HOH HOH . 
F 5 HOH A 27 527 16 HOH HOH . 
F 5 HOH A 28 528 89 HOH HOH . 
F 5 HOH A 29 529 31 HOH HOH . 
F 5 HOH A 30 530 18 HOH HOH . 
F 5 HOH A 31 531 68 HOH HOH . 
F 5 HOH A 32 532 90 HOH HOH . 
F 5 HOH A 33 533 4 HOH HOH . 
F 5 HOH A 34 534 43 HOH HOH . 
F 5 HOH A 35 535 11 HOH HOH . 
F 5 HOH A 36 536 62 HOH HOH . 
F 5 HOH A 37 537 48 HOH HOH . 
F 5 HOH A 38 538 29 HOH HOH . 
F 5 HOH A 39 539 126 HOH HOH . 
F 5 HOH A 40 540 36 HOH HOH . 
F 5 HOH A 41 541 72 HOH HOH . 
F 5 HOH A 42 542 127 HOH HOH . 
F 5 HOH A 43 543 47 HOH HOH . 
F 5 HOH A 44 544 129 HOH HOH . 
F 5 HOH A 45 545 122 HOH HOH . 
F 5 HOH A 46 546 137 HOH HOH . 
F 5 HOH A 47 547 128 HOH HOH . 
F 5 HOH A 48 548 14 HOH HOH . 
F 5 HOH A 49 549 130 HOH HOH . 
F 5 HOH A 50 550 92 HOH HOH . 
F 5 HOH A 51 551 73 HOH HOH . 
F 5 HOH A 52 552 80 HOH HOH . 
F 5 HOH A 53 553 125 HOH HOH . 
F 5 HOH A 54 554 42 HOH HOH . 
F 5 HOH A 55 555 3 HOH HOH . 
F 5 HOH A 56 556 78 HOH HOH . 
F 5 HOH A 57 557 40 HOH HOH . 
F 5 HOH A 58 558 20 HOH HOH . 
F 5 HOH A 59 559 82 HOH HOH . 
F 5 HOH A 60 560 84 HOH HOH . 
F 5 HOH A 61 561 35 HOH HOH . 
F 5 HOH A 62 562 114 HOH HOH . 
F 5 HOH A 63 563 52 HOH HOH . 
F 5 HOH A 64 564 79 HOH HOH . 
F 5 HOH A 65 565 33 HOH HOH . 
F 5 HOH A 66 566 32 HOH HOH . 
F 5 HOH A 67 567 93 HOH HOH . 
F 5 HOH A 68 568 60 HOH HOH . 
F 5 HOH A 69 569 97 HOH HOH . 
F 5 HOH A 70 570 22 HOH HOH . 
F 5 HOH A 71 571 12 HOH HOH . 
F 5 HOH A 72 572 15 HOH HOH . 
F 5 HOH A 73 573 25 HOH HOH . 
F 5 HOH A 74 574 77 HOH HOH . 
F 5 HOH A 75 575 38 HOH HOH . 
F 5 HOH A 76 576 119 HOH HOH . 
F 5 HOH A 77 577 49 HOH HOH . 
F 5 HOH A 78 578 13 HOH HOH . 
F 5 HOH A 79 579 19 HOH HOH . 
F 5 HOH A 80 580 86 HOH HOH . 
F 5 HOH A 81 581 107 HOH HOH . 
F 5 HOH A 82 582 105 HOH HOH . 
F 5 HOH A 83 583 28 HOH HOH . 
F 5 HOH A 84 584 104 HOH HOH . 
F 5 HOH A 85 585 7 HOH HOH . 
F 5 HOH A 86 586 66 HOH HOH . 
F 5 HOH A 87 587 116 HOH HOH . 
F 5 HOH A 88 588 57 HOH HOH . 
F 5 HOH A 89 589 101 HOH HOH . 
F 5 HOH A 90 590 53 HOH HOH . 
F 5 HOH A 91 591 133 HOH HOH . 
F 5 HOH A 92 592 44 HOH HOH . 
F 5 HOH A 93 593 65 HOH HOH . 
F 5 HOH A 94 594 74 HOH HOH . 
F 5 HOH A 95 595 30 HOH HOH . 
F 5 HOH A 96 596 112 HOH HOH . 
F 5 HOH A 97 597 103 HOH HOH . 
F 5 HOH A 98 598 91 HOH HOH . 
F 5 HOH A 99 599 63 HOH HOH . 
F 5 HOH A 100 600 99 HOH HOH . 
F 5 HOH A 101 601 120 HOH HOH . 
F 5 HOH A 102 602 45 HOH HOH . 
F 5 HOH A 103 603 131 HOH HOH . 
F 5 HOH A 104 604 135 HOH HOH . 
F 5 HOH A 105 605 88 HOH HOH . 
F 5 HOH A 106 606 111 HOH HOH . 
F 5 HOH A 107 607 55 HOH HOH . 
F 5 HOH A 108 608 134 HOH HOH . 
F 5 HOH A 109 609 26 HOH HOH . 
F 5 HOH A 110 610 54 HOH HOH . 
F 5 HOH A 111 611 83 HOH HOH . 
F 5 HOH A 112 612 113 HOH HOH . 
F 5 HOH A 113 613 102 HOH HOH . 
F 5 HOH A 114 614 124 HOH HOH . 
F 5 HOH A 115 615 34 HOH HOH . 
F 5 HOH A 116 616 50 HOH HOH . 
F 5 HOH A 117 617 100 HOH HOH . 
F 5 HOH A 118 618 64 HOH HOH . 
F 5 HOH A 119 619 117 HOH HOH . 
F 5 HOH A 120 620 121 HOH HOH . 
F 5 HOH A 121 621 94 HOH HOH . 
F 5 HOH A 122 622 123 HOH HOH . 
F 5 HOH A 123 623 132 HOH HOH . 
F 5 HOH A 124 624 58 HOH HOH . 
F 5 HOH A 125 625 115 HOH HOH . 
F 5 HOH A 126 626 76 HOH HOH . 
F 5 HOH A 127 627 69 HOH HOH . 
F 5 HOH A 128 628 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OWG . . . D 3 -4.981 34.396 -7.27 1 36.87 ? C10 OWG 403 A 1 
HETATM 2 C C12 OWG . . . D 3 -6.123 34.992 -9.17 1 32.34 ? C12 OWG 403 A 1 
HETATM 3 C C02 OWG . . . D 3 -4.509 28.889 -3.726 1 24.95 ? C02 OWG 403 A 1 
HETATM 4 C C03 OWG . . . D 3 -4.698 29.861 -4.671 1 29.35 ? C03 OWG 403 A 1 
HETATM 5 C C04 OWG . . . D 3 -3.685 31.034 -4.77 1 31.6 ? C04 OWG 403 A 1 
HETATM 6 C C05 OWG . . . D 3 -4.168 32.231 -5.652 1 29 ? C05 OWG 403 A 1 
HETATM 7 C C06 OWG . . . D 3 -3.382 32.63 -6.735 1 27.01 ? C06 OWG 403 A 1 
HETATM 8 C C07 OWG . . . D 3 -3.781 33.701 -7.556 1 27.04 ? C07 OWG 403 A 1 
HETATM 9 C C09 OWG . . . D 3 -1.8 33.346 -8.727 1 23.12 ? C09 OWG 403 A 1 
HETATM 10 C C13 OWG . . . D 3 -5.764 34.01 -6.178 1 37.62 ? C13 OWG 403 A 1 
HETATM 11 C C14 OWG . . . D 3 -7.107 34.772 -5.866 1 38.37 ? C14 OWG 403 A 1 
HETATM 12 C C15 OWG . . . D 3 -6.978 35.741 -4.667 1 35.25 ? C15 OWG 403 A 1 
HETATM 13 C C16 OWG . . . D 3 -8.234 36.693 -4.732 1 50.3 ? C16 OWG 403 A 1 
HETATM 14 C C19 OWG . . . D 3 -9.92 36.006 -1.622 1 50.29 ? C19 OWG 403 A 1 
HETATM 15 C C20 OWG . . . D 3 -10.489 37.451 -3.9 1 54.22 ? C20 OWG 403 A 1 
HETATM 16 C C24 OWG . . . D 3 -10.816 38.096 -2.54 1 59.81 ? C24 OWG 403 A 1 
HETATM 17 C C25 OWG . . . D 3 -10.535 37.363 -1.371 1 54.09 ? C25 OWG 403 A 1 
HETATM 18 C C26 OWG . . . D 3 -10.801 37.869 -0.175 1 49.96 ? C26 OWG 403 A 1 
HETATM 19 C C27 OWG . . . D 3 -11.333 39.064 -0.072 1 61.21 ? C27 OWG 403 A 1 
HETATM 20 C C28 OWG . . . D 3 -11.643 39.851 -1.164 1 68.39 ? C28 OWG 403 A 1 
HETATM 21 C C29 OWG . . . D 3 -11.408 39.426 -2.549 1 56.73 ? C29 OWG 403 A 1 
HETATM 22 C C31 OWG . . . D 3 -5.369 32.936 -5.363 1 30.19 ? C31 OWG 403 A 1 
HETATM 23 C C32 OWG . . . D 3 -5.765 29.761 -5.508 1 28.92 ? C32 OWG 403 A 1 
HETATM 24 C C34 OWG . . . D 3 -6.416 27.785 -4.451 1 21.98 ? C34 OWG 403 A 1 
HETATM 25 C C46 OWG . . . D 3 -13.587 41.072 -1.285 1 65.3 ? C46 OWG 403 A 1 
HETATM 26 C C48 OWG . . . D 3 -12.048 38.61 2.104 1 51.6 ? C48 OWG 403 A 1 
HETATM 27 C C69 OWG . . . D 3 -11.783 36.833 -4.454 1 47.99 ? C69 OWG 403 A 1 
HETATM 28 C C72 OWG . . . D 3 -12.093 36.954 -5.809 1 45.58 ? C72 OWG 403 A 1 
HETATM 29 C C75 OWG . . . D 3 -12.68 36.177 -3.598 1 45.86 ? C75 OWG 403 A 1 
HETATM 30 C C78 OWG . . . D 3 -13.279 36.406 -6.313 1 42.27 ? C78 OWG 403 A 1 
HETATM 31 C C80 OWG . . . D 3 -15.596 35.53 -7.305 1 47.48 ? C80 OWG 403 A 1 
HETATM 32 C C81 OWG . . . D 3 -13.864 35.632 -4.106 1 44.61 ? C81 OWG 403 A 1 
HETATM 33 C C84 OWG . . . D 3 -14.171 35.744 -5.461 1 44.29 ? C84 OWG 403 A 1 
HETATM 34 N N01 OWG . . . D 3 -3.381 28.949 -2.819 1 19.46 ? N01 OWG 403 A 1 
HETATM 35 N N17 OWG . . . D 3 -9.356 36.519 -3.791 1 52.81 ? N17 OWG 403 A 1 
HETATM 36 N N18 OWG . . . D 3 -9.31 35.519 -2.814 1 47.1 ? N18 OWG 403 A 1 
HETATM 37 N N33 OWG . . . D 3 -6.622 28.729 -5.397 1 23.96 ? N33 OWG 403 A 1 
HETATM 38 N N35 OWG . . . D 3 -7.337 26.663 -4.315 1 17.62 ? N35 OWG 403 A 1 
HETATM 39 N N36 OWG . . . D 3 -5.36 27.884 -3.635 1 21.31 ? N36 OWG 403 A 1 
HETATM 40 O O08 OWG . . . D 3 -2.992 34.099 -8.655 1 29.43 ? O08 OWG 403 A 1 
HETATM 41 O O11 OWG . . . D 3 -5.391 35.469 -8.081 1 37.79 ? O11 OWG 403 A 1 
HETATM 42 O O30 OWG . . . D 3 -8.28 37.552 -5.555 1 55.34 ? O30 OWG 403 A 1 
HETATM 43 O O45 OWG . . . D 3 -12.216 41.12 -0.945 1 66.79 ? O45 OWG 403 A 1 
HETATM 44 O O47 OWG . . . D 3 -11.614 39.603 1.205 1 60.65 ? O47 OWG 403 A 1 
HETATM 45 O O79 OWG . . . D 3 -15.383 35.176 -5.954 1 46.26 ? O79 OWG 403 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#