data_6PS0 # _model_server_result.job_id K8pqeI86tOhKnn6stneCJg _model_server_result.datetime_utc '2024-11-27 21:52:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ps0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 6PS0 # _exptl.entry_id 6PS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PS0 _cell.length_a 41.54 _cell.length_b 75.8 _cell.length_c 170.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 411 n n C10 C9 OLC doub 412 n n C10 C11 OLC sing 413 n n C9 C8 OLC sing 414 n n C17 C16 OLC sing 415 z n C11 C12 OLC sing 416 n n C8 C7 OLC sing 417 n n C24 C22 OLC sing 418 n n C24 O25 OLC sing 419 n n C16 C15 OLC sing 420 n n C12 C13 OLC sing 421 n n C7 C6 OLC sing 422 n n C15 C14 OLC sing 423 n n C13 C14 OLC sing 424 n n C6 C5 OLC sing 425 n n C5 C4 OLC sing 426 n n C4 C3 OLC sing 427 n n C3 C2 OLC sing 428 n n C2 C1 OLC sing 429 n n C21 C22 OLC sing 430 n n C21 O20 OLC sing 431 n n C1 O19 OLC doub 432 n n C1 O20 OLC sing 433 n n C22 O23 OLC sing 434 n n C18 H18 OLC sing 435 n n C18 H18A OLC sing 436 n n C18 H18B OLC sing 437 n n C10 H10 OLC sing 438 n n C9 H9 OLC sing 439 n n C17 H17 OLC sing 440 n n C17 H17A OLC sing 441 n n C11 H11 OLC sing 442 n n C11 H11A OLC sing 443 n n C8 H8 OLC sing 444 n n C8 H8A OLC sing 445 n n C24 H24 OLC sing 446 n n C24 H24A OLC sing 447 n n C16 H16 OLC sing 448 n n C16 H16A OLC sing 449 n n C12 H12 OLC sing 450 n n C12 H12A OLC sing 451 n n C7 H7 OLC sing 452 n n C7 H7A OLC sing 453 n n C15 H15 OLC sing 454 n n C15 H15A OLC sing 455 n n C13 H13 OLC sing 456 n n C13 H13A OLC sing 457 n n C6 H6 OLC sing 458 n n C6 H6A OLC sing 459 n n C14 H14 OLC sing 460 n n C14 H14A OLC sing 461 n n C5 H5 OLC sing 462 n n C5 H5A OLC sing 463 n n C4 H4 OLC sing 464 n n C4 H4A OLC sing 465 n n C3 H3 OLC sing 466 n n C3 H3A OLC sing 467 n n C2 H2 OLC sing 468 n n C2 H2A OLC sing 469 n n C21 H21 OLC sing 470 n n C21 H21A OLC sing 471 n n C22 H22 OLC sing 472 n n O25 HO25 OLC sing 473 n n O23 HO23 OLC sing 474 n n # _atom_sites.entry_id 6PS0 _atom_sites.fract_transf_matrix[1][1] 0.024073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005869 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAU A 1 1201 1200 CAU CAU . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 3 SO4 A 1 1204 3 SO4 SO4 . F 4 CLR A 1 1205 402 CLR CLR . G 5 OLC A 1 1206 405 OLC OLC . H 5 OLC A 1 1207 406 OLC OLC . I 5 OLC A 1 1208 407 OLC OLC . J 6 OLA A 1 1209 408 OLA OLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . H 5 5.64 30.794 29.311 1 113.2 ? C24 OLC 1207 A 1 HETATM 2 C C3 OLC . . . H 5 5.993 31.022 36.453 1 115.14 ? C3 OLC 1207 A 1 HETATM 3 C C2 OLC . . . H 5 5.331 31.61 35.203 1 116.32 ? C2 OLC 1207 A 1 HETATM 4 C C21 OLC . . . H 5 5.214 30.971 31.79 1 116.49 ? C21 OLC 1207 A 1 HETATM 5 C C1 OLC . . . H 5 6.21 31.545 33.96 1 117.97 ? C1 OLC 1207 A 1 HETATM 6 C C22 OLC . . . H 5 6.225 30.575 30.705 1 115.17 ? C22 OLC 1207 A 1 HETATM 7 O O19 OLC . . . H 5 7.385 31.203 34.029 1 119.58 ? O19 OLC 1207 A 1 HETATM 8 O O25 OLC . . . H 5 6.396 30.05 28.343 1 111.58 ? O25 OLC 1207 A 1 HETATM 9 O O23 OLC . . . H 5 7.474 31.267 30.833 1 115.79 ? O23 OLC 1207 A 1 HETATM 10 O O20 OLC . . . H 5 5.726 31.903 32.758 1 117.57 ? O20 OLC 1207 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #