data_6PS2 # _model_server_result.job_id NtG0_DqAz-7YM4IhTKWFew _model_server_result.datetime_utc '2024-11-27 16:18:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ps2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 6PS2 # _exptl.entry_id 6PS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PS2 _cell.length_a 41.65 _cell.length_b 76.24 _cell.length_c 171.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 408 n n C1 O20 OLB sing 409 n n C2 C1 OLB sing 410 n n C3 C2 OLB sing 411 n n C4 C3 OLB sing 412 n n C5 C4 OLB sing 413 n n C5 C6 OLB sing 414 n n O20 C21 OLB sing 415 n n C21 C22 OLB sing 416 n n C22 C24 OLB sing 417 n n O23 C22 OLB sing 418 n n C24 O25 OLB sing 419 n n C6 C7 OLB sing 420 n n C7 C8 OLB sing 421 n n C8 C9 OLB sing 422 n n C9 C10 OLB doub 423 z n C10 C11 OLB sing 424 n n C2 H2 OLB sing 425 n n C2 H2A OLB sing 426 n n C3 H3 OLB sing 427 n n C3 H3A OLB sing 428 n n C4 H4 OLB sing 429 n n C4 H4A OLB sing 430 n n C5 H5 OLB sing 431 n n C5 H5A OLB sing 432 n n C21 H21 OLB sing 433 n n C21 H21A OLB sing 434 n n C22 H22 OLB sing 435 n n O23 HO23 OLB sing 436 n n C24 H24 OLB sing 437 n n C24 H24A OLB sing 438 n n O25 HO25 OLB sing 439 n n C6 H16 OLB sing 440 n n C6 H17 OLB sing 441 n n C7 H18 OLB sing 442 n n C7 H19 OLB sing 443 n n C8 H20 OLB sing 444 n n C8 H211 OLB sing 445 n n C9 H221 OLB sing 446 n n C10 H23 OLB sing 447 n n C11 H241 OLB sing 448 n n C11 H25 OLB sing 449 n n C11 C12 OLB sing 450 n n C12 H26 OLB sing 451 n n C12 C13 OLB sing 452 n n C12 H27 OLB sing 453 n n C13 C14 OLB sing 454 n n C13 H28 OLB sing 455 n n C13 H29 OLB sing 456 n n C14 H30 OLB sing 457 n n C14 H31 OLB sing 458 n n C14 C15 OLB sing 459 n n C15 C16 OLB sing 460 n n C15 H32 OLB sing 461 n n C15 H33 OLB sing 462 n n C16 H34 OLB sing 463 n n C16 H35 OLB sing 464 n n C16 C17 OLB sing 465 n n C17 C18 OLB sing 466 n n C17 H36 OLB sing 467 n n C17 H37 OLB sing 468 n n C18 H38 OLB sing 469 n n C18 H39 OLB sing 470 n n C18 H40 OLB sing 471 n n # _atom_sites.entry_id 6PS2 _atom_sites.fract_transf_matrix[1][1] 0.02401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JTZ A 1 1201 1200 JTZ JTZ . C 3 CLR A 1 1202 402 CLR CLR . D 4 OLB A 1 1203 2426 OLB OLB . E 4 OLB A 1 1204 2432 OLB OLB . F 4 OLB A 1 1205 2433 OLB OLB . G 4 OLB A 1 1206 2435 OLB OLB . H 4 OLB A 1 1207 2436 OLB OLB . I 4 OLB A 1 1208 2438 OLB OLB . J 5 OLC A 1 1209 2439 OLC OLC . K 4 OLB A 1 1210 2440 OLB OLB . L 6 SO4 A 1 1211 1 SO4 SO4 . M 6 SO4 A 1 1212 2 SO4 SO4 . N 6 SO4 A 1 1213 3 SO4 SO4 . O 6 SO4 A 1 1214 4 SO4 SO4 . P 5 OLC A 1 1215 405 OLC OLC . Q 5 OLC A 1 1216 406 OLC OLC . R 7 OLA A 1 1217 1 OLA OLA . S 7 OLA A 1 1218 2 OLA OLA . T 7 OLA A 1 1219 3 OLA OLA . U 7 OLA A 1 1220 4 OLA OLA . V 8 HOH A 1 1301 41 HOH HOH . V 8 HOH A 2 1302 33 HOH HOH . V 8 HOH A 3 1303 63 HOH HOH . V 8 HOH A 4 1304 2 HOH HOH . V 8 HOH A 5 1305 40 HOH HOH . V 8 HOH A 6 1306 46 HOH HOH . V 8 HOH A 7 1307 9 HOH HOH . V 8 HOH A 8 1308 12 HOH HOH . V 8 HOH A 9 1309 5 HOH HOH . V 8 HOH A 10 1310 6 HOH HOH . V 8 HOH A 11 1311 16 HOH HOH . V 8 HOH A 12 1312 8 HOH HOH . V 8 HOH A 13 1313 11 HOH HOH . V 8 HOH A 14 1314 15 HOH HOH . V 8 HOH A 15 1315 42 HOH HOH . V 8 HOH A 16 1316 49 HOH HOH . V 8 HOH A 17 1317 1 HOH HOH . V 8 HOH A 18 1318 54 HOH HOH . V 8 HOH A 19 1319 10 HOH HOH . V 8 HOH A 20 1320 57 HOH HOH . V 8 HOH A 21 1321 30 HOH HOH . V 8 HOH A 22 1322 14 HOH HOH . V 8 HOH A 23 1323 4 HOH HOH . V 8 HOH A 24 1324 47 HOH HOH . V 8 HOH A 25 1325 64 HOH HOH . V 8 HOH A 26 1326 62 HOH HOH . V 8 HOH A 27 1327 22 HOH HOH . V 8 HOH A 28 1328 53 HOH HOH . V 8 HOH A 29 1329 59 HOH HOH . V 8 HOH A 30 1330 60 HOH HOH . V 8 HOH A 31 1331 29 HOH HOH . V 8 HOH A 32 1332 51 HOH HOH . V 8 HOH A 33 1333 52 HOH HOH . V 8 HOH A 34 1334 20 HOH HOH . V 8 HOH A 35 1335 56 HOH HOH . V 8 HOH A 36 1336 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . H 4 6.231 32.282 32.145 1 121.03 ? C1 OLB 1207 A 1 HETATM 2 C C2 OLB . . . H 4 5.41 32.39 33.425 1 115.32 ? C2 OLB 1207 A 1 HETATM 3 C C3 OLB . . . H 4 6.227 32.805 34.649 1 109.58 ? C3 OLB 1207 A 1 HETATM 4 C C4 OLB . . . H 4 5.462 32.554 35.939 1 105.34 ? C4 OLB 1207 A 1 HETATM 5 C C5 OLB . . . H 4 6.459 32.269 37.048 1 104.34 ? C5 OLB 1207 A 1 HETATM 6 O O19 OLB . . . H 4 7.459 32.342 32.134 1 123.09 ? O19 OLB 1207 A 1 HETATM 7 O O20 OLB . . . H 4 5.6 32.113 30.978 1 122.24 ? O20 OLB 1207 A 1 HETATM 8 C C21 OLB . . . H 4 5.517 30.818 30.377 1 121.41 ? C21 OLB 1207 A 1 HETATM 9 C C22 OLB . . . H 4 6.237 30.858 29.038 1 120.48 ? C22 OLB 1207 A 1 HETATM 10 O O23 OLB . . . H 4 7.099 29.721 28.881 1 118.8 ? O23 OLB 1207 A 1 HETATM 11 C C24 OLB . . . H 4 5.18 30.883 27.947 1 120.64 ? C24 OLB 1207 A 1 HETATM 12 O O25 OLB . . . H 4 5.821 31.149 26.697 1 121.5 ? O25 OLB 1207 A 1 HETATM 13 C C6 OLB . . . H 4 6.134 30.965 37.762 1 104.26 ? C6 OLB 1207 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #