data_6PS2 # _model_server_result.job_id 1wabLDS8EMSNAd96vSlvxA _model_server_result.datetime_utc '2024-11-23 23:06:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ps2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1209}' # _entry.id 6PS2 # _exptl.entry_id 6PS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PS2 _cell.length_a 41.65 _cell.length_b 76.24 _cell.length_c 171.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 472 n n C10 C9 OLC doub 473 n n C10 C11 OLC sing 474 n n C9 C8 OLC sing 475 n n C17 C16 OLC sing 476 z n C11 C12 OLC sing 477 n n C8 C7 OLC sing 478 n n C24 C22 OLC sing 479 n n C24 O25 OLC sing 480 n n C16 C15 OLC sing 481 n n C12 C13 OLC sing 482 n n C7 C6 OLC sing 483 n n C15 C14 OLC sing 484 n n C13 C14 OLC sing 485 n n C6 C5 OLC sing 486 n n C5 C4 OLC sing 487 n n C4 C3 OLC sing 488 n n C3 C2 OLC sing 489 n n C2 C1 OLC sing 490 n n C21 C22 OLC sing 491 n n C21 O20 OLC sing 492 n n C1 O19 OLC doub 493 n n C1 O20 OLC sing 494 n n C22 O23 OLC sing 495 n n C18 H18 OLC sing 496 n n C18 H18A OLC sing 497 n n C18 H18B OLC sing 498 n n C10 H10 OLC sing 499 n n C9 H9 OLC sing 500 n n C17 H17 OLC sing 501 n n C17 H17A OLC sing 502 n n C11 H11 OLC sing 503 n n C11 H11A OLC sing 504 n n C8 H8 OLC sing 505 n n C8 H8A OLC sing 506 n n C24 H24 OLC sing 507 n n C24 H24A OLC sing 508 n n C16 H16 OLC sing 509 n n C16 H16A OLC sing 510 n n C12 H12 OLC sing 511 n n C12 H12A OLC sing 512 n n C7 H7 OLC sing 513 n n C7 H7A OLC sing 514 n n C15 H15 OLC sing 515 n n C15 H15A OLC sing 516 n n C13 H13 OLC sing 517 n n C13 H13A OLC sing 518 n n C6 H6 OLC sing 519 n n C6 H6A OLC sing 520 n n C14 H14 OLC sing 521 n n C14 H14A OLC sing 522 n n C5 H5 OLC sing 523 n n C5 H5A OLC sing 524 n n C4 H4 OLC sing 525 n n C4 H4A OLC sing 526 n n C3 H3 OLC sing 527 n n C3 H3A OLC sing 528 n n C2 H2 OLC sing 529 n n C2 H2A OLC sing 530 n n C21 H21 OLC sing 531 n n C21 H21A OLC sing 532 n n C22 H22 OLC sing 533 n n O25 HO25 OLC sing 534 n n O23 HO23 OLC sing 535 n n # _atom_sites.entry_id 6PS2 _atom_sites.fract_transf_matrix[1][1] 0.02401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JTZ A 1 1201 1200 JTZ JTZ . C 3 CLR A 1 1202 402 CLR CLR . D 4 OLB A 1 1203 2426 OLB OLB . E 4 OLB A 1 1204 2432 OLB OLB . F 4 OLB A 1 1205 2433 OLB OLB . G 4 OLB A 1 1206 2435 OLB OLB . H 4 OLB A 1 1207 2436 OLB OLB . I 4 OLB A 1 1208 2438 OLB OLB . J 5 OLC A 1 1209 2439 OLC OLC . K 4 OLB A 1 1210 2440 OLB OLB . L 6 SO4 A 1 1211 1 SO4 SO4 . M 6 SO4 A 1 1212 2 SO4 SO4 . N 6 SO4 A 1 1213 3 SO4 SO4 . O 6 SO4 A 1 1214 4 SO4 SO4 . P 5 OLC A 1 1215 405 OLC OLC . Q 5 OLC A 1 1216 406 OLC OLC . R 7 OLA A 1 1217 1 OLA OLA . S 7 OLA A 1 1218 2 OLA OLA . T 7 OLA A 1 1219 3 OLA OLA . U 7 OLA A 1 1220 4 OLA OLA . V 8 HOH A 1 1301 41 HOH HOH . V 8 HOH A 2 1302 33 HOH HOH . V 8 HOH A 3 1303 63 HOH HOH . V 8 HOH A 4 1304 2 HOH HOH . V 8 HOH A 5 1305 40 HOH HOH . V 8 HOH A 6 1306 46 HOH HOH . V 8 HOH A 7 1307 9 HOH HOH . V 8 HOH A 8 1308 12 HOH HOH . V 8 HOH A 9 1309 5 HOH HOH . V 8 HOH A 10 1310 6 HOH HOH . V 8 HOH A 11 1311 16 HOH HOH . V 8 HOH A 12 1312 8 HOH HOH . V 8 HOH A 13 1313 11 HOH HOH . V 8 HOH A 14 1314 15 HOH HOH . V 8 HOH A 15 1315 42 HOH HOH . V 8 HOH A 16 1316 49 HOH HOH . V 8 HOH A 17 1317 1 HOH HOH . V 8 HOH A 18 1318 54 HOH HOH . V 8 HOH A 19 1319 10 HOH HOH . V 8 HOH A 20 1320 57 HOH HOH . V 8 HOH A 21 1321 30 HOH HOH . V 8 HOH A 22 1322 14 HOH HOH . V 8 HOH A 23 1323 4 HOH HOH . V 8 HOH A 24 1324 47 HOH HOH . V 8 HOH A 25 1325 64 HOH HOH . V 8 HOH A 26 1326 62 HOH HOH . V 8 HOH A 27 1327 22 HOH HOH . V 8 HOH A 28 1328 53 HOH HOH . V 8 HOH A 29 1329 59 HOH HOH . V 8 HOH A 30 1330 60 HOH HOH . V 8 HOH A 31 1331 29 HOH HOH . V 8 HOH A 32 1332 51 HOH HOH . V 8 HOH A 33 1333 52 HOH HOH . V 8 HOH A 34 1334 20 HOH HOH . V 8 HOH A 35 1335 56 HOH HOH . V 8 HOH A 36 1336 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . J 5 -6.018 -3.053 40.884 1 94.33 ? C10 OLC 1209 A 1 HETATM 2 C C9 OLC . . . J 5 -6.211 -3.12 39.556 1 96.86 ? C9 OLC 1209 A 1 HETATM 3 C C11 OLC . . . J 5 -5.699 -4.217 41.795 1 91.56 ? C11 OLC 1209 A 1 HETATM 4 C C8 OLC . . . J 5 -6.118 -4.373 38.706 1 97.8 ? C8 OLC 1209 A 1 HETATM 5 C C7 OLC . . . J 5 -7.254 -4.416 37.692 1 98.11 ? C7 OLC 1209 A 1 HETATM 6 C C6 OLC . . . J 5 -6.772 -4.937 36.341 1 98.89 ? C6 OLC 1209 A 1 HETATM 7 C C5 OLC . . . J 5 -7.4 -4.136 35.205 1 100.36 ? C5 OLC 1209 A 1 HETATM 8 C C4 OLC . . . J 5 -8.147 -5.033 34.224 1 103.43 ? C4 OLC 1209 A 1 HETATM 9 C C3 OLC . . . J 5 -9.652 -4.745 34.216 1 105.02 ? C3 OLC 1209 A 1 HETATM 10 C C2 OLC . . . J 5 -10.179 -4.492 32.802 1 104.71 ? C2 OLC 1209 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #