data_6PS4
#
_model_server_result.job_id            OusUFIWtiUm11M9ofixAKg 
_model_server_result.datetime_utc      '2024-10-11 02:26:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ps4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1211}' 
#
_entry.id    6PS4 
#
_exptl.entry_id    6PS4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PS4 
_cell.length_a            41.5 
_cell.length_b            76.2 
_cell.length_c            171.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PS4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 415 n n 
C10 C9 OLC doub 416 n n 
C10 C11 OLC sing 417 n n 
C9 C8 OLC sing 418 n n 
C17 C16 OLC sing 419 z n 
C11 C12 OLC sing 420 n n 
C8 C7 OLC sing 421 n n 
C24 C22 OLC sing 422 n n 
C24 O25 OLC sing 423 n n 
C16 C15 OLC sing 424 n n 
C12 C13 OLC sing 425 n n 
C7 C6 OLC sing 426 n n 
C15 C14 OLC sing 427 n n 
C13 C14 OLC sing 428 n n 
C6 C5 OLC sing 429 n n 
C5 C4 OLC sing 430 n n 
C4 C3 OLC sing 431 n n 
C3 C2 OLC sing 432 n n 
C2 C1 OLC sing 433 n n 
C21 C22 OLC sing 434 n n 
C21 O20 OLC sing 435 n n 
C1 O19 OLC doub 436 n n 
C1 O20 OLC sing 437 n n 
C22 O23 OLC sing 438 n n 
C18 H18 OLC sing 439 n n 
C18 H18A OLC sing 440 n n 
C18 H18B OLC sing 441 n n 
C10 H10 OLC sing 442 n n 
C9 H9 OLC sing 443 n n 
C17 H17 OLC sing 444 n n 
C17 H17A OLC sing 445 n n 
C11 H11 OLC sing 446 n n 
C11 H11A OLC sing 447 n n 
C8 H8 OLC sing 448 n n 
C8 H8A OLC sing 449 n n 
C24 H24 OLC sing 450 n n 
C24 H24A OLC sing 451 n n 
C16 H16 OLC sing 452 n n 
C16 H16A OLC sing 453 n n 
C12 H12 OLC sing 454 n n 
C12 H12A OLC sing 455 n n 
C7 H7 OLC sing 456 n n 
C7 H7A OLC sing 457 n n 
C15 H15 OLC sing 458 n n 
C15 H15A OLC sing 459 n n 
C13 H13 OLC sing 460 n n 
C13 H13A OLC sing 461 n n 
C6 H6 OLC sing 462 n n 
C6 H6A OLC sing 463 n n 
C14 H14 OLC sing 464 n n 
C14 H14A OLC sing 465 n n 
C5 H5 OLC sing 466 n n 
C5 H5A OLC sing 467 n n 
C4 H4 OLC sing 468 n n 
C4 H4A OLC sing 469 n n 
C3 H3 OLC sing 470 n n 
C3 H3A OLC sing 471 n n 
C2 H2 OLC sing 472 n n 
C2 H2A OLC sing 473 n n 
C21 H21 OLC sing 474 n n 
C21 H21A OLC sing 475 n n 
C22 H22 OLC sing 476 n n 
O25 HO25 OLC sing 477 n n 
O23 HO23 OLC sing 478 n n 
#
_atom_sites.entry_id                     6PS4 
_atom_sites.fract_transf_matrix[1][1]    0.024096 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JRZ A 1 1201 1200 JRZ JRZ . 
C 3 SO4 A 1 1202 1 SO4 SO4 . 
D 3 SO4 A 1 1203 2 SO4 SO4 . 
E 3 SO4 A 1 1204 3 SO4 SO4 . 
F 4 CLR A 1 1205 400 CLR CLR . 
G 5 OLA A 1 1206 401 OLA OLA . 
H 5 OLA A 1 1207 412 OLA OLA . 
I 5 OLA A 1 1208 413 OLA OLA . 
J 5 OLA A 1 1209 424 OLA OLA . 
K 6 OLC A 1 1210 425 OLC OLC . 
L 6 OLC A 1 1211 426 OLC OLC . 
M 6 OLC A 1 1212 427 OLC OLC . 
N 6 OLC A 1 1213 438 OLC OLC . 
O 6 OLC A 1 1214 439 OLC OLC . 
P 6 OLC A 1 1215 510 OLC OLC . 
Q 6 OLC A 1 1216 511 OLC OLC . 
R 6 OLC A 1 1217 512 OLC OLC . 
S 6 OLC A 1 1218 513 OLC OLC . 
T 6 OLC A 1 1219 514 OLC OLC . 
U 7 HOH A 1 1301 35 HOH HOH . 
U 7 HOH A 2 1302 36 HOH HOH . 
U 7 HOH A 3 1303 37 HOH HOH . 
U 7 HOH A 4 1304 39 HOH HOH . 
U 7 HOH A 5 1305 38 HOH HOH . 
U 7 HOH A 6 1306 43 HOH HOH . 
U 7 HOH A 7 1307 40 HOH HOH . 
U 7 HOH A 8 1308 44 HOH HOH . 
U 7 HOH A 9 1309 41 HOH HOH . 
U 7 HOH A 10 1310 34 HOH HOH . 
U 7 HOH A 11 1311 33 HOH HOH . 
U 7 HOH A 12 1312 16 HOH HOH . 
U 7 HOH A 13 1313 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . L 6 -7.385 19.297 35.594 1 97.38 ? C10 OLC 1211 A 1 
HETATM 2 C C9 OLC . . . L 6 -7.119 19.196 34.282 1 98.67 ? C9 OLC 1211 A 1 
HETATM 3 C C11 OLC . . . L 6 -7.106 20.513 36.456 1 96.06 ? C11 OLC 1211 A 1 
HETATM 4 C C8 OLC . . . L 6 -6.493 20.282 33.425 1 99.93 ? C8 OLC 1211 A 1 
HETATM 5 C C24 OLC . . . L 6 -12.252 20.981 21.957 1 118.39 ? C24 OLC 1211 A 1 
HETATM 6 C C7 OLC . . . L 6 -6.536 19.872 31.958 1 100.82 ? C7 OLC 1211 A 1 
HETATM 7 C C6 OLC . . . L 6 -7.602 20.651 31.194 1 102.82 ? C6 OLC 1211 A 1 
HETATM 8 C C5 OLC . . . L 6 -8.288 19.805 30.119 1 105.6 ? C5 OLC 1211 A 1 
HETATM 9 C C4 OLC . . . L 6 -7.661 19.962 28.73 1 108.2 ? C4 OLC 1211 A 1 
HETATM 10 C C3 OLC . . . L 6 -8.324 21.062 27.899 1 110.84 ? C3 OLC 1211 A 1 
HETATM 11 C C2 OLC . . . L 6 -9.176 20.493 26.763 1 113.64 ? C2 OLC 1211 A 1 
HETATM 12 C C21 OLC . . . L 6 -10.651 21.437 23.811 1 118.13 ? C21 OLC 1211 A 1 
HETATM 13 C C1 OLC . . . L 6 -8.859 21.087 25.397 1 116.71 ? C1 OLC 1211 A 1 
HETATM 14 C C22 OLC . . . L 6 -10.782 21.156 22.32 1 118.75 ? C22 OLC 1211 A 1 
HETATM 15 O O19 OLC . . . L 6 -7.965 21.909 25.226 1 118.1 ? O19 OLC 1211 A 1 
HETATM 16 O O25 OLC . . . L 6 -12.629 19.611 22.134 1 118.16 ? O25 OLC 1211 A 1 
HETATM 17 O O23 OLC . . . L 6 -10.233 22.255 21.585 1 119.8 ? O23 OLC 1211 A 1 
HETATM 18 O O20 OLC . . . L 6 -9.553 20.684 24.328 1 117.6 ? O20 OLC 1211 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#