data_6PS4 # _model_server_result.job_id 4o9Lf-sljZkYDWzgY8Nabw _model_server_result.datetime_utc '2024-11-24 00:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ps4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 6PS4 # _exptl.entry_id 6PS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PS4 _cell.length_a 41.5 _cell.length_b 76.2 _cell.length_c 171.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 415 n n C10 C9 OLC doub 416 n n C10 C11 OLC sing 417 n n C9 C8 OLC sing 418 n n C17 C16 OLC sing 419 z n C11 C12 OLC sing 420 n n C8 C7 OLC sing 421 n n C24 C22 OLC sing 422 n n C24 O25 OLC sing 423 n n C16 C15 OLC sing 424 n n C12 C13 OLC sing 425 n n C7 C6 OLC sing 426 n n C15 C14 OLC sing 427 n n C13 C14 OLC sing 428 n n C6 C5 OLC sing 429 n n C5 C4 OLC sing 430 n n C4 C3 OLC sing 431 n n C3 C2 OLC sing 432 n n C2 C1 OLC sing 433 n n C21 C22 OLC sing 434 n n C21 O20 OLC sing 435 n n C1 O19 OLC doub 436 n n C1 O20 OLC sing 437 n n C22 O23 OLC sing 438 n n C18 H18 OLC sing 439 n n C18 H18A OLC sing 440 n n C18 H18B OLC sing 441 n n C10 H10 OLC sing 442 n n C9 H9 OLC sing 443 n n C17 H17 OLC sing 444 n n C17 H17A OLC sing 445 n n C11 H11 OLC sing 446 n n C11 H11A OLC sing 447 n n C8 H8 OLC sing 448 n n C8 H8A OLC sing 449 n n C24 H24 OLC sing 450 n n C24 H24A OLC sing 451 n n C16 H16 OLC sing 452 n n C16 H16A OLC sing 453 n n C12 H12 OLC sing 454 n n C12 H12A OLC sing 455 n n C7 H7 OLC sing 456 n n C7 H7A OLC sing 457 n n C15 H15 OLC sing 458 n n C15 H15A OLC sing 459 n n C13 H13 OLC sing 460 n n C13 H13A OLC sing 461 n n C6 H6 OLC sing 462 n n C6 H6A OLC sing 463 n n C14 H14 OLC sing 464 n n C14 H14A OLC sing 465 n n C5 H5 OLC sing 466 n n C5 H5A OLC sing 467 n n C4 H4 OLC sing 468 n n C4 H4A OLC sing 469 n n C3 H3 OLC sing 470 n n C3 H3A OLC sing 471 n n C2 H2 OLC sing 472 n n C2 H2A OLC sing 473 n n C21 H21 OLC sing 474 n n C21 H21A OLC sing 475 n n C22 H22 OLC sing 476 n n O25 HO25 OLC sing 477 n n O23 HO23 OLC sing 478 n n # _atom_sites.entry_id 6PS4 _atom_sites.fract_transf_matrix[1][1] 0.024096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JRZ A 1 1201 1200 JRZ JRZ . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 3 SO4 A 1 1204 3 SO4 SO4 . F 4 CLR A 1 1205 400 CLR CLR . G 5 OLA A 1 1206 401 OLA OLA . H 5 OLA A 1 1207 412 OLA OLA . I 5 OLA A 1 1208 413 OLA OLA . J 5 OLA A 1 1209 424 OLA OLA . K 6 OLC A 1 1210 425 OLC OLC . L 6 OLC A 1 1211 426 OLC OLC . M 6 OLC A 1 1212 427 OLC OLC . N 6 OLC A 1 1213 438 OLC OLC . O 6 OLC A 1 1214 439 OLC OLC . P 6 OLC A 1 1215 510 OLC OLC . Q 6 OLC A 1 1216 511 OLC OLC . R 6 OLC A 1 1217 512 OLC OLC . S 6 OLC A 1 1218 513 OLC OLC . T 6 OLC A 1 1219 514 OLC OLC . U 7 HOH A 1 1301 35 HOH HOH . U 7 HOH A 2 1302 36 HOH HOH . U 7 HOH A 3 1303 37 HOH HOH . U 7 HOH A 4 1304 39 HOH HOH . U 7 HOH A 5 1305 38 HOH HOH . U 7 HOH A 6 1306 43 HOH HOH . U 7 HOH A 7 1307 40 HOH HOH . U 7 HOH A 8 1308 44 HOH HOH . U 7 HOH A 9 1309 41 HOH HOH . U 7 HOH A 10 1310 34 HOH HOH . U 7 HOH A 11 1311 33 HOH HOH . U 7 HOH A 12 1312 16 HOH HOH . U 7 HOH A 13 1313 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . L 6 -7.385 19.297 35.594 1 97.38 ? C10 OLC 1211 A 1 HETATM 2 C C9 OLC . . . L 6 -7.119 19.196 34.282 1 98.67 ? C9 OLC 1211 A 1 HETATM 3 C C11 OLC . . . L 6 -7.106 20.513 36.456 1 96.06 ? C11 OLC 1211 A 1 HETATM 4 C C8 OLC . . . L 6 -6.493 20.282 33.425 1 99.93 ? C8 OLC 1211 A 1 HETATM 5 C C24 OLC . . . L 6 -12.252 20.981 21.957 1 118.39 ? C24 OLC 1211 A 1 HETATM 6 C C7 OLC . . . L 6 -6.536 19.872 31.958 1 100.82 ? C7 OLC 1211 A 1 HETATM 7 C C6 OLC . . . L 6 -7.602 20.651 31.194 1 102.82 ? C6 OLC 1211 A 1 HETATM 8 C C5 OLC . . . L 6 -8.288 19.805 30.119 1 105.6 ? C5 OLC 1211 A 1 HETATM 9 C C4 OLC . . . L 6 -7.661 19.962 28.73 1 108.2 ? C4 OLC 1211 A 1 HETATM 10 C C3 OLC . . . L 6 -8.324 21.062 27.899 1 110.84 ? C3 OLC 1211 A 1 HETATM 11 C C2 OLC . . . L 6 -9.176 20.493 26.763 1 113.64 ? C2 OLC 1211 A 1 HETATM 12 C C21 OLC . . . L 6 -10.651 21.437 23.811 1 118.13 ? C21 OLC 1211 A 1 HETATM 13 C C1 OLC . . . L 6 -8.859 21.087 25.397 1 116.71 ? C1 OLC 1211 A 1 HETATM 14 C C22 OLC . . . L 6 -10.782 21.156 22.32 1 118.75 ? C22 OLC 1211 A 1 HETATM 15 O O19 OLC . . . L 6 -7.965 21.909 25.226 1 118.1 ? O19 OLC 1211 A 1 HETATM 16 O O25 OLC . . . L 6 -12.629 19.611 22.134 1 118.16 ? O25 OLC 1211 A 1 HETATM 17 O O23 OLC . . . L 6 -10.233 22.255 21.585 1 119.8 ? O23 OLC 1211 A 1 HETATM 18 O O20 OLC . . . L 6 -9.553 20.684 24.328 1 117.6 ? O20 OLC 1211 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #