data_6PS5
#
_model_server_result.job_id            tgjWTG0HpjFdAtwOXpGRbw 
_model_server_result.datetime_utc      '2024-11-01 03:27:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ps5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1211}' 
#
_entry.id    6PS5 
#
_exptl.entry_id    6PS5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PS5 
_cell.length_a            42.73 
_cell.length_b            77.6 
_cell.length_c            173.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PS5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 130 A CYS 106 1_555 A SG CYS 215 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 208 A CYS 184 1_555 A SG CYS 214 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 365 n n 
C10 C9 OLC doub 366 n n 
C10 C11 OLC sing 367 n n 
C9 C8 OLC sing 368 n n 
C17 C16 OLC sing 369 z n 
C11 C12 OLC sing 370 n n 
C8 C7 OLC sing 371 n n 
C24 C22 OLC sing 372 n n 
C24 O25 OLC sing 373 n n 
C16 C15 OLC sing 374 n n 
C12 C13 OLC sing 375 n n 
C7 C6 OLC sing 376 n n 
C15 C14 OLC sing 377 n n 
C13 C14 OLC sing 378 n n 
C6 C5 OLC sing 379 n n 
C5 C4 OLC sing 380 n n 
C4 C3 OLC sing 381 n n 
C3 C2 OLC sing 382 n n 
C2 C1 OLC sing 383 n n 
C21 C22 OLC sing 384 n n 
C21 O20 OLC sing 385 n n 
C1 O19 OLC doub 386 n n 
C1 O20 OLC sing 387 n n 
C22 O23 OLC sing 388 n n 
C18 H18 OLC sing 389 n n 
C18 H18A OLC sing 390 n n 
C18 H18B OLC sing 391 n n 
C10 H10 OLC sing 392 n n 
C9 H9 OLC sing 393 n n 
C17 H17 OLC sing 394 n n 
C17 H17A OLC sing 395 n n 
C11 H11 OLC sing 396 n n 
C11 H11A OLC sing 397 n n 
C8 H8 OLC sing 398 n n 
C8 H8A OLC sing 399 n n 
C24 H24 OLC sing 400 n n 
C24 H24A OLC sing 401 n n 
C16 H16 OLC sing 402 n n 
C16 H16A OLC sing 403 n n 
C12 H12 OLC sing 404 n n 
C12 H12A OLC sing 405 n n 
C7 H7 OLC sing 406 n n 
C7 H7A OLC sing 407 n n 
C15 H15 OLC sing 408 n n 
C15 H15A OLC sing 409 n n 
C13 H13 OLC sing 410 n n 
C13 H13A OLC sing 411 n n 
C6 H6 OLC sing 412 n n 
C6 H6A OLC sing 413 n n 
C14 H14 OLC sing 414 n n 
C14 H14A OLC sing 415 n n 
C5 H5 OLC sing 416 n n 
C5 H5A OLC sing 417 n n 
C4 H4 OLC sing 418 n n 
C4 H4A OLC sing 419 n n 
C3 H3 OLC sing 420 n n 
C3 H3A OLC sing 421 n n 
C2 H2 OLC sing 422 n n 
C2 H2A OLC sing 423 n n 
C21 H21 OLC sing 424 n n 
C21 H21A OLC sing 425 n n 
C22 H22 OLC sing 426 n n 
O25 HO25 OLC sing 427 n n 
O23 HO23 OLC sing 428 n n 
#
_atom_sites.entry_id                     6PS5 
_atom_sites.fract_transf_matrix[1][1]    0.023403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SNP A 1 1201 1200 SNP SNP . 
C 3 SO4 A 1 1202 1 SO4 SO4 . 
D 3 SO4 A 1 1203 2 SO4 SO4 . 
E 3 SO4 A 1 1204 3 SO4 SO4 . 
F 3 SO4 A 1 1205 4 SO4 SO4 . 
G 4 CLR A 1 1206 402 CLR CLR . 
H 5 OLA A 1 1207 403 OLA OLA . 
I 5 OLA A 1 1208 404 OLA OLA . 
J 6 OLC A 1 1209 406 OLC OLC . 
K 6 OLC A 1 1210 507 OLC OLC . 
L 6 OLC A 1 1211 508 OLC OLC . 
M 6 OLC A 1 1212 509 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 OLC . . . L 6 -4.028 -9.692 34.306 1 105.92 ? C8 OLC 1211 A 1 
HETATM 2 C C24 OLC . . . L 6 -8.366 -8.425 23.847 1 113.17 ? C24 OLC 1211 A 1 
HETATM 3 C C7 OLC . . . L 6 -3.94 -8.337 33.612 1 106.94 ? C7 OLC 1211 A 1 
HETATM 4 C C6 OLC . . . L 6 -5.05 -8.172 32.577 1 108.18 ? C6 OLC 1211 A 1 
HETATM 5 C C5 OLC . . . L 6 -5.128 -6.74 32.057 1 108.81 ? C5 OLC 1211 A 1 
HETATM 6 C C4 OLC . . . L 6 -6.318 -6.559 31.122 1 109.53 ? C4 OLC 1211 A 1 
HETATM 7 C C3 OLC . . . L 6 -5.862 -6.09 29.746 1 110.69 ? C3 OLC 1211 A 1 
HETATM 8 C C2 OLC . . . L 6 -6.791 -6.61 28.649 1 112.17 ? C2 OLC 1211 A 1 
HETATM 9 C C21 OLC . . . L 6 -6.585 -8.274 25.606 1 113.25 ? C21 OLC 1211 A 1 
HETATM 10 C C1 OLC . . . L 6 -6.188 -6.538 27.255 1 113.73 ? C1 OLC 1211 A 1 
HETATM 11 C C22 OLC . . . L 6 -6.875 -8.232 24.108 1 113.24 ? C22 OLC 1211 A 1 
HETATM 12 O O19 OLC . . . L 6 -5.091 -6.033 27.045 1 114.8 ? O19 OLC 1211 A 1 
HETATM 13 O O25 OLC . . . L 6 -8.543 -9.294 22.721 1 113.04 ? O25 OLC 1211 A 1 
HETATM 14 O O23 OLC . . . L 6 -6.433 -6.992 23.541 1 113.46 ? O23 OLC 1211 A 1 
HETATM 15 O O20 OLC . . . L 6 -6.881 -7.013 26.214 1 113.67 ? O20 OLC 1211 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#