data_6PS7
#
_model_server_result.job_id            ibBhWgP7KMQS-6G42sdLXA 
_model_server_result.datetime_utc      '2024-11-24 00:47:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ps7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    6PS7 
#
_exptl.entry_id    6PS7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PS7 
_cell.length_a            40.32 
_cell.length_b            180.49 
_cell.length_c            142.48 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PS7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 91 A CYS 71 1_555 A SG CYS 179 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf2 A SG CYS 94 A CYS 74 1_555 A SG CYS 166 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
disulf ? disulf3 A SG CYS 97 A CYS 77 1_555 A SG CYS 186 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf4 A SG CYS 375 A CYS 259 1_555 A SG CYS 378 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc1 A OD1 ASP 72 A ASP 52 1_555 CA NA NA . A NA 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc2 A OG SER 111 A SER 91 1_555 CA NA NA . A NA 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc3 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc4 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc5 CA NA NA . A NA 1228 1_555 DA O HOH . A HOH 1380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 431 n n 
C10 C9 OLC doub 432 n n 
C10 C11 OLC sing 433 n n 
C9 C8 OLC sing 434 n n 
C17 C16 OLC sing 435 z n 
C11 C12 OLC sing 436 n n 
C8 C7 OLC sing 437 n n 
C24 C22 OLC sing 438 n n 
C24 O25 OLC sing 439 n n 
C16 C15 OLC sing 440 n n 
C12 C13 OLC sing 441 n n 
C7 C6 OLC sing 442 n n 
C15 C14 OLC sing 443 n n 
C13 C14 OLC sing 444 n n 
C6 C5 OLC sing 445 n n 
C5 C4 OLC sing 446 n n 
C4 C3 OLC sing 447 n n 
C3 C2 OLC sing 448 n n 
C2 C1 OLC sing 449 n n 
C21 C22 OLC sing 450 n n 
C21 O20 OLC sing 451 n n 
C1 O19 OLC doub 452 n n 
C1 O20 OLC sing 453 n n 
C22 O23 OLC sing 454 n n 
C18 H18 OLC sing 455 n n 
C18 H18A OLC sing 456 n n 
C18 H18B OLC sing 457 n n 
C10 H10 OLC sing 458 n n 
C9 H9 OLC sing 459 n n 
C17 H17 OLC sing 460 n n 
C17 H17A OLC sing 461 n n 
C11 H11 OLC sing 462 n n 
C11 H11A OLC sing 463 n n 
C8 H8 OLC sing 464 n n 
C8 H8A OLC sing 465 n n 
C24 H24 OLC sing 466 n n 
C24 H24A OLC sing 467 n n 
C16 H16 OLC sing 468 n n 
C16 H16A OLC sing 469 n n 
C12 H12 OLC sing 470 n n 
C12 H12A OLC sing 471 n n 
C7 H7 OLC sing 472 n n 
C7 H7A OLC sing 473 n n 
C15 H15 OLC sing 474 n n 
C15 H15A OLC sing 475 n n 
C13 H13 OLC sing 476 n n 
C13 H13A OLC sing 477 n n 
C6 H6 OLC sing 478 n n 
C6 H6A OLC sing 479 n n 
C14 H14 OLC sing 480 n n 
C14 H14A OLC sing 481 n n 
C5 H5 OLC sing 482 n n 
C5 H5A OLC sing 483 n n 
C4 H4 OLC sing 484 n n 
C4 H4A OLC sing 485 n n 
C3 H3 OLC sing 486 n n 
C3 H3A OLC sing 487 n n 
C2 H2 OLC sing 488 n n 
C2 H2A OLC sing 489 n n 
C21 H21 OLC sing 490 n n 
C21 H21A OLC sing 491 n n 
C22 H22 OLC sing 492 n n 
O25 HO25 OLC sing 493 n n 
O23 HO23 OLC sing 494 n n 
#
_atom_sites.entry_id                     6PS7 
_atom_sites.fract_transf_matrix[1][1]    0.024802 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 1201 1201 ZMA ZMA . 
C 3 OLC A 1 1202 1208 OLC OLC . 
D 3 OLC A 1 1203 1209 OLC OLC . 
E 3 OLC A 1 1204 1211 OLC OLC . 
F 3 OLC A 1 1205 1212 OLC OLC . 
G 3 OLC A 1 1206 1213 OLC OLC . 
H 3 OLC A 1 1207 1214 OLC OLC . 
I 3 OLC A 1 1208 1215 OLC OLC . 
J 3 OLC A 1 1209 1216 OLC OLC . 
K 3 OLC A 1 1210 1217 OLC OLC . 
L 4 CLR A 1 1211 1203 CLR CLR . 
M 4 CLR A 1 1212 1204 CLR CLR . 
N 4 CLR A 1 1213 1205 CLR CLR . 
O 5 OLB A 1 1214 1207 OLB OLB . 
P 6 OLA A 1 1215 1215 OLA OLA . 
Q 6 OLA A 1 1216 1216 OLA OLA . 
R 6 OLA A 1 1217 1218 OLA OLA . 
S 6 OLA A 1 1218 1219 OLA OLA . 
T 6 OLA A 1 1219 1220 OLA OLA . 
U 6 OLA A 1 1220 1221 OLA OLA . 
V 6 OLA A 1 1221 1222 OLA OLA . 
W 6 OLA A 1 1222 1223 OLA OLA . 
X 6 OLA A 1 1223 1224 OLA OLA . 
Y 6 OLA A 1 1224 1225 OLA OLA . 
Z 6 OLA A 1 1225 1226 OLA OLA . 
AA 6 OLA A 1 1226 1227 OLA OLA . 
BA 6 OLA A 1 1227 1228 OLA OLA . 
CA 7 NA A 1 1228 1 NA NA . 
DA 8 HOH A 1 1301 52 HOH HOH . 
DA 8 HOH A 2 1302 73 HOH HOH . 
DA 8 HOH A 3 1303 96 HOH HOH . 
DA 8 HOH A 4 1304 51 HOH HOH . 
DA 8 HOH A 5 1305 57 HOH HOH . 
DA 8 HOH A 6 1306 109 HOH HOH . 
DA 8 HOH A 7 1307 89 HOH HOH . 
DA 8 HOH A 8 1308 44 HOH HOH . 
DA 8 HOH A 9 1309 64 HOH HOH . 
DA 8 HOH A 10 1310 25 HOH HOH . 
DA 8 HOH A 11 1311 48 HOH HOH . 
DA 8 HOH A 12 1312 6 HOH HOH . 
DA 8 HOH A 13 1313 50 HOH HOH . 
DA 8 HOH A 14 1314 31 HOH HOH . 
DA 8 HOH A 15 1315 84 HOH HOH . 
DA 8 HOH A 16 1316 9 HOH HOH . 
DA 8 HOH A 17 1317 8 HOH HOH . 
DA 8 HOH A 18 1318 60 HOH HOH . 
DA 8 HOH A 19 1319 2 HOH HOH . 
DA 8 HOH A 20 1320 21 HOH HOH . 
DA 8 HOH A 21 1321 34 HOH HOH . 
DA 8 HOH A 22 1322 7 HOH HOH . 
DA 8 HOH A 23 1323 12 HOH HOH . 
DA 8 HOH A 24 1324 45 HOH HOH . 
DA 8 HOH A 25 1325 14 HOH HOH . 
DA 8 HOH A 26 1326 10 HOH HOH . 
DA 8 HOH A 27 1327 54 HOH HOH . 
DA 8 HOH A 28 1328 82 HOH HOH . 
DA 8 HOH A 29 1329 38 HOH HOH . 
DA 8 HOH A 30 1330 15 HOH HOH . 
DA 8 HOH A 31 1331 68 HOH HOH . 
DA 8 HOH A 32 1332 27 HOH HOH . 
DA 8 HOH A 33 1333 75 HOH HOH . 
DA 8 HOH A 34 1334 53 HOH HOH . 
DA 8 HOH A 35 1335 86 HOH HOH . 
DA 8 HOH A 36 1336 19 HOH HOH . 
DA 8 HOH A 37 1337 77 HOH HOH . 
DA 8 HOH A 38 1338 39 HOH HOH . 
DA 8 HOH A 39 1339 5 HOH HOH . 
DA 8 HOH A 40 1340 37 HOH HOH . 
DA 8 HOH A 41 1341 20 HOH HOH . 
DA 8 HOH A 42 1342 102 HOH HOH . 
DA 8 HOH A 43 1343 56 HOH HOH . 
DA 8 HOH A 44 1344 71 HOH HOH . 
DA 8 HOH A 45 1345 32 HOH HOH . 
DA 8 HOH A 46 1346 33 HOH HOH . 
DA 8 HOH A 47 1347 49 HOH HOH . 
DA 8 HOH A 48 1348 29 HOH HOH . 
DA 8 HOH A 49 1349 41 HOH HOH . 
DA 8 HOH A 50 1350 22 HOH HOH . 
DA 8 HOH A 51 1351 62 HOH HOH . 
DA 8 HOH A 52 1352 11 HOH HOH . 
DA 8 HOH A 53 1353 79 HOH HOH . 
DA 8 HOH A 54 1354 40 HOH HOH . 
DA 8 HOH A 55 1355 91 HOH HOH . 
DA 8 HOH A 56 1356 106 HOH HOH . 
DA 8 HOH A 57 1357 3 HOH HOH . 
DA 8 HOH A 58 1358 30 HOH HOH . 
DA 8 HOH A 59 1359 61 HOH HOH . 
DA 8 HOH A 60 1360 18 HOH HOH . 
DA 8 HOH A 61 1361 108 HOH HOH . 
DA 8 HOH A 62 1362 78 HOH HOH . 
DA 8 HOH A 63 1363 81 HOH HOH . 
DA 8 HOH A 64 1364 4 HOH HOH . 
DA 8 HOH A 65 1365 55 HOH HOH . 
DA 8 HOH A 66 1366 80 HOH HOH . 
DA 8 HOH A 67 1367 85 HOH HOH . 
DA 8 HOH A 68 1368 43 HOH HOH . 
DA 8 HOH A 69 1369 87 HOH HOH . 
DA 8 HOH A 70 1370 13 HOH HOH . 
DA 8 HOH A 71 1371 17 HOH HOH . 
DA 8 HOH A 72 1372 69 HOH HOH . 
DA 8 HOH A 73 1373 65 HOH HOH . 
DA 8 HOH A 74 1374 97 HOH HOH . 
DA 8 HOH A 75 1375 35 HOH HOH . 
DA 8 HOH A 76 1376 42 HOH HOH . 
DA 8 HOH A 77 1377 46 HOH HOH . 
DA 8 HOH A 78 1378 36 HOH HOH . 
DA 8 HOH A 79 1379 26 HOH HOH . 
DA 8 HOH A 80 1380 1 HOH HOH . 
DA 8 HOH A 81 1381 63 HOH HOH . 
DA 8 HOH A 82 1382 24 HOH HOH . 
DA 8 HOH A 83 1383 74 HOH HOH . 
DA 8 HOH A 84 1384 23 HOH HOH . 
DA 8 HOH A 85 1385 16 HOH HOH . 
DA 8 HOH A 86 1386 107 HOH HOH . 
DA 8 HOH A 87 1387 83 HOH HOH . 
DA 8 HOH A 88 1388 70 HOH HOH . 
DA 8 HOH A 89 1389 76 HOH HOH . 
DA 8 HOH A 90 1390 104 HOH HOH . 
DA 8 HOH A 91 1391 59 HOH HOH . 
DA 8 HOH A 92 1392 103 HOH HOH . 
DA 8 HOH A 93 1393 72 HOH HOH . 
DA 8 HOH A 94 1394 105 HOH HOH . 
DA 8 HOH A 95 1395 90 HOH HOH . 
DA 8 HOH A 96 1396 66 HOH HOH . 
DA 8 HOH A 97 1397 93 HOH HOH . 
DA 8 HOH A 98 1398 94 HOH HOH . 
DA 8 HOH A 99 1399 95 HOH HOH . 
DA 8 HOH A 100 1400 92 HOH HOH . 
DA 8 HOH A 101 1401 47 HOH HOH . 
DA 8 HOH A 102 1402 28 HOH HOH . 
DA 8 HOH A 103 1403 58 HOH HOH . 
DA 8 HOH A 104 1404 67 HOH HOH . 
DA 8 HOH A 105 1405 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . E 3 20.741 178.227 1.438 1 68.48 ? C10 OLC 1204 A 1 
HETATM 2 C C9 OLC . . . E 3 20.862 176.907 1.691 1 66.29 ? C9 OLC 1204 A 1 
HETATM 3 C C11 OLC . . . E 3 21.323 179.269 2.367 1 70.23 ? C11 OLC 1204 A 1 
HETATM 4 C C8 OLC . . . E 3 21.594 176.414 2.919 1 64.91 ? C8 OLC 1204 A 1 
HETATM 5 C C24 OLC . . . E 3 25.503 165.734 7.945 1 82.7 ? C24 OLC 1204 A 1 
HETATM 6 C C7 OLC . . . E 3 21.246 174.958 3.151 1 64.2 ? C7 OLC 1204 A 1 
HETATM 7 C C6 OLC . . . E 3 22.266 174.344 4.08 1 64.18 ? C6 OLC 1204 A 1 
HETATM 8 C C5 OLC . . . E 3 21.696 173.089 4.709 1 65.59 ? C5 OLC 1204 A 1 
HETATM 9 C C4 OLC . . . E 3 21.732 171.941 3.72 1 69.49 ? C4 OLC 1204 A 1 
HETATM 10 C C3 OLC . . . E 3 21.619 170.617 4.451 1 75.59 ? C3 OLC 1204 A 1 
HETATM 11 C C2 OLC . . . E 3 22.97 170.206 4.993 1 82.19 ? C2 OLC 1204 A 1 
HETATM 12 C C21 OLC . . . E 3 24.463 167.6 6.738 1 86.16 ? C21 OLC 1204 A 1 
HETATM 13 C C1 OLC . . . E 3 22.817 169.02 5.917 1 88.68 ? C1 OLC 1204 A 1 
HETATM 14 C C22 OLC . . . E 3 25.057 167.171 8.066 1 81.8 ? C22 OLC 1204 A 1 
HETATM 15 O O19 OLC . . . E 3 21.861 168.279 5.791 1 93.05 ? O19 OLC 1204 A 1 
HETATM 16 O O25 OLC . . . E 3 26.349 165.465 9.04 1 83.85 ? O25 OLC 1204 A 1 
HETATM 17 O O23 OLC . . . E 3 26.175 167.958 8.429 1 77.35 ? O23 OLC 1204 A 1 
HETATM 18 O O20 OLC . . . E 3 23.732 168.792 6.887 1 88.61 ? O20 OLC 1204 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#