data_6PS8 # _model_server_result.job_id Rg-PpBo2y1iCnKjhb0qBxA _model_server_result.datetime_utc '2024-11-06 01:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ps8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6PS8 # _exptl.entry_id 6PS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PS8 _cell.length_a 122.2 _cell.length_b 122.2 _cell.length_c 122.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 91 A CYS 100 1_555 A SG CYS 168 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C ASP 212 A ASP 1003 1_555 A N YCM 213 A YCM 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C YCM 213 A YCM 1004 1_555 A N SER 214 A SER 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C19 H20 N2 O2' _chem_comp.formula_weight 308.374 _chem_comp.id JEY _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-phenylmelatonin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 JEY doub 171 n y C16 C15 JEY sing 172 n y C17 C18 JEY sing 173 n y C15 C14 JEY doub 174 n y C18 C19 JEY doub 175 n y O2 C2 JEY doub 176 n n C14 C19 JEY sing 177 n y C19 C6 JEY sing 178 n n C1 C2 JEY sing 179 n n C2 N1 JEY sing 180 n n N1 C3 JEY sing 181 n n C3 C4 JEY sing 182 n n C4 C5 JEY sing 183 n n C6 C5 JEY doub 184 n y C6 N2 JEY sing 185 n y C5 C12 JEY sing 186 n y N2 C7 JEY sing 187 n y C12 C7 JEY doub 188 n y C12 C11 JEY sing 189 n y C7 C8 JEY sing 190 n y C11 C10 JEY doub 191 n y C8 C9 JEY doub 192 n y C10 C9 JEY sing 193 n y C10 O1 JEY sing 194 n n O1 C13 JEY sing 195 n n C4 H1 JEY sing 196 n n C4 H2 JEY sing 197 n n C3 H3 JEY sing 198 n n C3 H4 JEY sing 199 n n C1 H5 JEY sing 200 n n C1 H6 JEY sing 201 n n C1 H7 JEY sing 202 n n N1 H8 JEY sing 203 n n C11 H9 JEY sing 204 n n C13 H10 JEY sing 205 n n C13 H11 JEY sing 206 n n C13 H12 JEY sing 207 n n C14 H13 JEY sing 208 n n C15 H14 JEY sing 209 n n C16 H15 JEY sing 210 n n C17 H16 JEY sing 211 n n C18 H17 JEY sing 212 n n N2 H18 JEY sing 213 n n C8 H19 JEY sing 214 n n C9 H20 JEY sing 215 n n # _atom_sites.entry_id 6PS8 _atom_sites.fract_transf_matrix[1][1] 0.008183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id JEY _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1201 _pdbx_nonpoly_scheme.auth_seq_num 1201 _pdbx_nonpoly_scheme.pdb_mon_id JEY _pdbx_nonpoly_scheme.auth_mon_id JEY _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JEY . . . B 2 24.186 -23.115 46.25 1 105.97 ? C4 JEY 1201 A 1 HETATM 2 C C3 JEY . . . B 2 24.175 -21.953 47.262 1 106.27 ? C3 JEY 1201 A 1 HETATM 3 C C2 JEY . . . B 2 23.928 -19.417 47.251 1 106.1 ? C2 JEY 1201 A 1 HETATM 4 O O2 JEY . . . B 2 23.531 -19.408 48.367 1 107.72 ? O2 JEY 1201 A 1 HETATM 5 C C1 JEY . . . B 2 24.06 -18.093 46.504 1 105.95 ? C1 JEY 1201 A 1 HETATM 6 O O1 JEY . . . B 2 29.333 -23.992 47.965 1 110.49 ? O1 JEY 1201 A 1 HETATM 7 N N1 JEY . . . B 2 24.289 -20.665 46.588 1 105.73 ? N1 JEY 1201 A 1 HETATM 8 C C10 JEY . . . B 2 28.088 -24.635 47.964 1 108.88 ? C10 JEY 1201 A 1 HETATM 9 C C11 JEY . . . B 2 26.938 -24.029 47.382 1 107.89 ? C11 JEY 1201 A 1 HETATM 10 C C12 JEY . . . B 2 25.716 -24.682 47.396 1 107.42 ? C12 JEY 1201 A 1 HETATM 11 C C13 JEY . . . B 2 29.694 -23.225 46.848 1 110.28 ? C13 JEY 1201 A 1 HETATM 12 C C14 JEY . . . B 2 21.085 -24.17 47.119 1 107.66 ? C14 JEY 1201 A 1 HETATM 13 C C15 JEY . . . B 2 19.812 -24.209 46.763 1 107.12 ? C15 JEY 1201 A 1 HETATM 14 C C16 JEY . . . B 2 19.257 -25.425 46.025 1 106.59 ? C16 JEY 1201 A 1 HETATM 15 C C17 JEY . . . B 2 20.056 -26.434 45.738 1 106.84 ? C17 JEY 1201 A 1 HETATM 16 C C18 JEY . . . B 2 21.531 -26.386 46.145 1 107.18 ? C18 JEY 1201 A 1 HETATM 17 C C19 JEY . . . B 2 22.014 -25.34 46.789 1 107.19 ? C19 JEY 1201 A 1 HETATM 18 N N2 JEY . . . B 2 24.192 -26.333 47.837 1 107.44 ? N2 JEY 1201 A 1 HETATM 19 C C5 JEY . . . B 2 24.429 -24.455 46.967 1 106.9 ? C5 JEY 1201 A 1 HETATM 20 C C6 JEY . . . B 2 23.495 -25.334 47.173 1 107.21 ? C6 JEY 1201 A 1 HETATM 21 C C7 JEY . . . B 2 25.642 -25.989 48.028 1 107.57 ? C7 JEY 1201 A 1 HETATM 22 C C8 JEY . . . B 2 26.731 -26.569 48.592 1 107.93 ? C8 JEY 1201 A 1 HETATM 23 C C9 JEY . . . B 2 27.956 -25.916 48.574 1 108.71 ? C9 JEY 1201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #