data_6PT2 # _model_server_result.job_id u2kWevRHPiUYY14hT9beQg _model_server_result.datetime_utc '2024-11-13 06:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1206}' # _entry.id 6PT2 # _exptl.entry_id 6PT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PT2 _cell.length_a 48.96 _cell.length_b 140.88 _cell.length_c 158.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 237 A CYS 121 1_555 A SG CYS 314 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 237 B CYS 121 1_555 B SG CYS 314 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 C C DI7 1 C DI7 1 1_555 C N DAR 2 C DAR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 C C DAR 2 C DAR 2 1_555 C N PHE 3 C PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 C C PHE 3 C PHE 3 1_555 C N SAR 4 C SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale4 C C SAR 4 C SAR 4 1_555 C NBO OXJ 5 C OXJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 D C DI7 1 D DI7 1 1_555 D N DAR 2 D DAR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 D C DAR 2 D DAR 2 1_555 D N PHE 3 D PHE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 D C PHE 3 D PHE 3 1_555 D N SAR 4 D SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale8 D C SAR 4 D SAR 4 1_555 D NBO OXJ 5 D OXJ 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 423 n n C10 C9 OLC doub 424 n n C10 C11 OLC sing 425 n n C9 C8 OLC sing 426 n n C17 C16 OLC sing 427 z n C11 C12 OLC sing 428 n n C8 C7 OLC sing 429 n n C24 C22 OLC sing 430 n n C24 O25 OLC sing 431 n n C16 C15 OLC sing 432 n n C12 C13 OLC sing 433 n n C7 C6 OLC sing 434 n n C15 C14 OLC sing 435 n n C13 C14 OLC sing 436 n n C6 C5 OLC sing 437 n n C5 C4 OLC sing 438 n n C4 C3 OLC sing 439 n n C3 C2 OLC sing 440 n n C2 C1 OLC sing 441 n n C21 C22 OLC sing 442 n n C21 O20 OLC sing 443 n n C1 O19 OLC doub 444 n n C1 O20 OLC sing 445 n n C22 O23 OLC sing 446 n n C18 H18 OLC sing 447 n n C18 H18A OLC sing 448 n n C18 H18B OLC sing 449 n n C10 H10 OLC sing 450 n n C9 H9 OLC sing 451 n n C17 H17 OLC sing 452 n n C17 H17A OLC sing 453 n n C11 H11 OLC sing 454 n n C11 H11A OLC sing 455 n n C8 H8 OLC sing 456 n n C8 H8A OLC sing 457 n n C24 H24 OLC sing 458 n n C24 H24A OLC sing 459 n n C16 H16 OLC sing 460 n n C16 H16A OLC sing 461 n n C12 H12 OLC sing 462 n n C12 H12A OLC sing 463 n n C7 H7 OLC sing 464 n n C7 H7A OLC sing 465 n n C15 H15 OLC sing 466 n n C15 H15A OLC sing 467 n n C13 H13 OLC sing 468 n n C13 H13A OLC sing 469 n n C6 H6 OLC sing 470 n n C6 H6A OLC sing 471 n n C14 H14 OLC sing 472 n n C14 H14A OLC sing 473 n n C5 H5 OLC sing 474 n n C5 H5A OLC sing 475 n n C4 H4 OLC sing 476 n n C4 H4A OLC sing 477 n n C3 H3 OLC sing 478 n n C3 H3A OLC sing 479 n n C2 H2 OLC sing 480 n n C2 H2A OLC sing 481 n n C21 H21 OLC sing 482 n n C21 H21A OLC sing 483 n n C22 H22 OLC sing 484 n n O25 HO25 OLC sing 485 n n O23 HO23 OLC sing 486 n n # _atom_sites.entry_id 6PT2 _atom_sites.fract_transf_matrix[1][1] 0.020425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR A 1 1201 511 CLR CLR . F 4 OLA A 1 1202 512 OLA OLA . G 4 OLA A 1 1203 513 OLA OLA . H 4 OLA B 1 1201 511 OLA OLA . I 4 OLA B 1 1202 512 OLA OLA . J 4 OLA B 1 1203 513 OLA OLA . K 4 OLA B 1 1204 514 OLA OLA . L 4 OLA B 1 1205 515 OLA OLA . M 5 OLC B 1 1206 516 OLC OLC . N 6 HOH A 1 1301 522 HOH HOH . N 6 HOH A 2 1302 523 HOH HOH . O 6 HOH C 1 101 521 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 5 -35.812 5.204 -38.206 1 127.92 ? C10 OLC 1206 B 1 HETATM 2 C C9 OLC . . . M 5 -35.839 5.562 -39.498 1 127.23 ? C9 OLC 1206 B 1 HETATM 3 C C11 OLC . . . M 5 -34.878 4.166 -37.616 1 128.09 ? C11 OLC 1206 B 1 HETATM 4 C C8 OLC . . . M 5 -34.936 4.989 -40.573 1 126.39 ? C8 OLC 1206 B 1 HETATM 5 C C24 OLC . . . M 5 -35.188 5.314 -52.965 1 124.61 ? C24 OLC 1206 B 1 HETATM 6 C C12 OLC . . . M 5 -35.662 3.207 -36.727 1 127.71 ? C12 OLC 1206 B 1 HETATM 7 C C7 OLC . . . M 5 -35.644 5.004 -41.926 1 125.45 ? C7 OLC 1206 B 1 HETATM 8 C C6 OLC . . . M 5 -34.837 5.747 -42.987 1 124.43 ? C6 OLC 1206 B 1 HETATM 9 C C5 OLC . . . M 5 -33.968 4.787 -43.794 1 123.35 ? C5 OLC 1206 B 1 HETATM 10 C C4 OLC . . . M 5 -33.493 5.45 -45.075 1 122.2 ? C4 OLC 1206 B 1 HETATM 11 C C3 OLC . . . M 5 -33.589 4.461 -46.223 1 121.71 ? C3 OLC 1206 B 1 HETATM 12 C C2 OLC . . . M 5 -34.773 4.813 -47.109 1 121.9 ? C2 OLC 1206 B 1 HETATM 13 C C21 OLC . . . M 5 -34.892 4.584 -50.597 1 123.75 ? C21 OLC 1206 B 1 HETATM 14 C C1 OLC . . . M 5 -34.275 5.43 -48.397 1 121.96 ? C1 OLC 1206 B 1 HETATM 15 C C22 OLC . . . M 5 -34.253 5.334 -51.76 1 124.35 ? C22 OLC 1206 B 1 HETATM 16 O O19 OLC . . . M 5 -34.104 6.641 -48.492 1 119.92 ? O19 OLC 1206 B 1 HETATM 17 O O25 OLC . . . M 5 -34.443 5.618 -54.15 1 124.24 ? O25 OLC 1206 B 1 HETATM 18 O O23 OLC . . . M 5 -33.998 6.688 -51.37 1 124.25 ? O23 OLC 1206 B 1 HETATM 19 O O20 OLC . . . M 5 -34.01 4.615 -49.472 1 122.87 ? O20 OLC 1206 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 19 #