data_6PT3 # _model_server_result.job_id uXkRQtfdeoqTVfW8FQ6MzA _model_server_result.datetime_utc '2025-08-31 09:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 6PT3 # _exptl.entry_id 6PT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.66 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PT3 _cell.length_a 49.084 _cell.length_b 142.101 _cell.length_c 157.491 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 237 A CYS 121 1_555 A SG CYS 314 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 237 B CYS 121 1_555 B SG CYS 314 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C31 H39 N3 O2' _chem_comp.formula_weight 485.66 _chem_comp.id OWY _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBG OWY sing 235 n n CBG NBF OWY sing 236 n n NBF CBH OWY sing 237 n n NBF CBD OWY sing 238 n n CBH CBJ OWY sing 239 n n OBE CBD OWY doub 240 n n CBD CAZ OWY sing 241 n n CAZ CBA OWY doub 242 n y CAZ CAY OWY sing 243 n y CBA CBB OWY sing 244 n y CAY CAX OWY doub 245 n y CBB CAR OWY doub 246 n y CAX CAR OWY sing 247 n y CAR CAP OWY sing 248 n n OBC CAT OWY sing 249 n n CAS CAT OWY doub 250 n y CAS CAQ OWY sing 251 n y CAP CAQ OWY sing 252 n n CAP NAK OWY sing 253 n n CAT CAU OWY sing 254 n y CAQ CAW OWY doub 255 n y CAL NAK OWY sing 256 n n CAL CAM OWY sing 257 n n CAU CAV OWY doub 258 n y NAK CAJ OWY sing 259 n n CAW CAV OWY sing 260 n y CAN CAM OWY sing 261 n n CAM NAH OWY sing 262 n n CAO CAJ OWY sing 263 n n CAJ CAI OWY sing 264 n n NAH CAI OWY sing 265 n n NAH CAG OWY sing 266 n n CAG CAB OWY sing 267 n n CAB CAC OWY doub 268 n y CAB CAA OWY sing 269 n y CAC CAD OWY sing 270 n y CAA CAF OWY doub 271 n y CAD CAE OWY doub 272 n y CAF CAE OWY sing 273 n y CBI H1 OWY sing 274 n n CBI H2 OWY sing 275 n n CBI H3 OWY sing 276 n n CBG H4 OWY sing 277 n n CBG H5 OWY sing 278 n n CBH H6 OWY sing 279 n n CBH H7 OWY sing 280 n n CBJ H8 OWY sing 281 n n CBJ H9 OWY sing 282 n n CBJ H10 OWY sing 283 n n CBA H11 OWY sing 284 n n CBB H12 OWY sing 285 n n CAY H13 OWY sing 286 n n CAX H14 OWY sing 287 n n CAP H15 OWY sing 288 n n CAS H16 OWY sing 289 n n OBC H17 OWY sing 290 n n CAU H18 OWY sing 291 n n CAV H19 OWY sing 292 n n CAW H20 OWY sing 293 n n CAJ H22 OWY sing 294 n n CAI H23 OWY sing 295 n n CAI H24 OWY sing 296 n n CAO H25 OWY sing 297 n n CAO H26 OWY sing 298 n n CAO H27 OWY sing 299 n n CAL H28 OWY sing 300 n n CAL H29 OWY sing 301 n n CAM H30 OWY sing 302 n n CAN H31 OWY sing 303 n n CAN H32 OWY sing 304 n n CAN H33 OWY sing 305 n n CAG H35 OWY sing 306 n n CAG H36 OWY sing 307 n n CAA H37 OWY sing 308 n n CAF H38 OWY sing 309 n n CAE H39 OWY sing 310 n n CAD H40 OWY sing 311 n n CAC H41 OWY sing 312 n n # _atom_sites.entry_id 6PT3 _atom_sites.fract_transf_matrix[1][1] 0.020373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OWY A 1 1201 501 OWY DPI . D 2 OWY B 1 1201 501 OWY DPI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBI OWY . . . C 2 2.438 -40.25 -54.794 1 115.32 ? CBI OWY 1201 A 1 HETATM 2 C CBG OWY . . . C 2 1.794 -39.555 -53.596 1 114.76 ? CBG OWY 1201 A 1 HETATM 3 N NBF OWY . . . C 2 2.007 -40.204 -52.438 1 116.1 ? NBF OWY 1201 A 1 HETATM 4 C CBH OWY . . . C 2 1.144 -41.201 -52.107 1 114.97 ? CBH OWY 1201 A 1 HETATM 5 C CBJ OWY . . . C 2 -0.138 -40.803 -51.327 1 113.42 ? CBJ OWY 1201 A 1 HETATM 6 C CBD OWY . . . C 2 3.082 -39.835 -51.677 1 117.66 ? CBD OWY 1201 A 1 HETATM 7 O OBE OWY . . . C 2 3.791 -38.935 -52.048 1 119.43 ? OBE OWY 1201 A 1 HETATM 8 C CAZ OWY . . . C 2 3.485 -40.472 -50.392 1 114.24 ? CAZ OWY 1201 A 1 HETATM 9 C CBA OWY . . . C 2 4.647 -41.27 -50.34 1 112.61 ? CBA OWY 1201 A 1 HETATM 10 C CBB OWY . . . C 2 5.07 -41.843 -49.123 1 111.42 ? CBB OWY 1201 A 1 HETATM 11 C CAY OWY . . . C 2 2.787 -40.195 -49.205 1 112.38 ? CAY OWY 1201 A 1 HETATM 12 C CAX OWY . . . C 2 3.19 -40.78 -47.996 1 111.56 ? CAX OWY 1201 A 1 HETATM 13 C CAR OWY . . . C 2 4.349 -41.59 -47.938 1 111.03 ? CAR OWY 1201 A 1 HETATM 14 C CAP OWY . . . C 2 4.792 -42.221 -46.661 1 108.99 ? CAP OWY 1201 A 1 HETATM 15 C CAQ OWY . . . C 2 3.774 -43.222 -46.249 1 107.59 ? CAQ OWY 1201 A 1 HETATM 16 C CAS OWY . . . C 2 3.864 -44.497 -46.812 1 107.15 ? CAS OWY 1201 A 1 HETATM 17 C CAT OWY . . . C 2 2.897 -45.468 -46.521 1 107.47 ? CAT OWY 1201 A 1 HETATM 18 O OBC OWY . . . C 2 2.993 -46.692 -47.122 1 107.36 ? OBC OWY 1201 A 1 HETATM 19 C CAU OWY . . . C 2 1.847 -45.186 -45.633 1 107.52 ? CAU OWY 1201 A 1 HETATM 20 C CAV OWY . . . C 2 1.736 -43.904 -45.072 1 107.57 ? CAV OWY 1201 A 1 HETATM 21 C CAW OWY . . . C 2 2.691 -42.922 -45.388 1 107.68 ? CAW OWY 1201 A 1 HETATM 22 N NAK OWY . . . C 2 5.14 -41.265 -45.594 1 105.88 ? NAK OWY 1201 A 1 HETATM 23 C CAJ OWY . . . C 2 5.698 -41.858 -44.386 1 105.98 ? CAJ OWY 1201 A 1 HETATM 24 C CAI OWY . . . C 2 5.645 -40.762 -43.29 1 107.88 ? CAI OWY 1201 A 1 HETATM 25 C CAO OWY . . . C 2 7.092 -42.511 -44.506 1 105.63 ? CAO OWY 1201 A 1 HETATM 26 C CAL OWY . . . C 2 5.982 -40.13 -46.071 1 103.68 ? CAL OWY 1201 A 1 HETATM 27 C CAM OWY . . . C 2 5.824 -38.983 -45.023 1 106.52 ? CAM OWY 1201 A 1 HETATM 28 C CAN OWY . . . C 2 4.403 -38.413 -45.12 1 108.08 ? CAN OWY 1201 A 1 HETATM 29 N NAH OWY . . . C 2 6.218 -39.471 -43.698 1 108.19 ? NAH OWY 1201 A 1 HETATM 30 C CAG OWY . . . C 2 6.023 -38.411 -42.656 1 107.06 ? CAG OWY 1201 A 1 HETATM 31 C CAB OWY . . . C 2 6.519 -38.701 -41.289 1 105.6 ? CAB OWY 1201 A 1 HETATM 32 C CAA OWY . . . C 2 5.683 -38.407 -40.19 1 104.19 ? CAA OWY 1201 A 1 HETATM 33 C CAF OWY . . . C 2 6.112 -38.664 -38.869 1 102.18 ? CAF OWY 1201 A 1 HETATM 34 C CAE OWY . . . C 2 7.395 -39.186 -38.632 1 101.1 ? CAE OWY 1201 A 1 HETATM 35 C CAD OWY . . . C 2 8.248 -39.451 -39.724 1 102.46 ? CAD OWY 1201 A 1 HETATM 36 C CAC OWY . . . C 2 7.817 -39.209 -41.048 1 104.39 ? CAC OWY 1201 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #