data_6PT3
#
_model_server_result.job_id            2SLQGjxTzJ-Sh-NouYTWRg 
_model_server_result.datetime_utc      '2025-07-19 22:58:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pt3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1201}' 
#
_entry.id    6PT3 
#
_exptl.entry_id    6PT3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              485.66 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PT3 
_cell.length_a            49.084 
_cell.length_b            142.101 
_cell.length_c            157.491 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PT3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 237 A CYS 121 1_555 A SG CYS 314 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 237 B CYS 121 1_555 B SG CYS 314 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C31 H39 N3 O2' 
_chem_comp.formula_weight    485.66 
_chem_comp.id                OWY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(R)-[(2S,5R)-4-benzyl-2,5-dimethylpiperazin-1-yl](3-hydroxyphenyl)methyl]-N,N-diethylbenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBI CBG OWY sing 235 n n 
CBG NBF OWY sing 236 n n 
NBF CBH OWY sing 237 n n 
NBF CBD OWY sing 238 n n 
CBH CBJ OWY sing 239 n n 
OBE CBD OWY doub 240 n n 
CBD CAZ OWY sing 241 n n 
CAZ CBA OWY doub 242 n y 
CAZ CAY OWY sing 243 n y 
CBA CBB OWY sing 244 n y 
CAY CAX OWY doub 245 n y 
CBB CAR OWY doub 246 n y 
CAX CAR OWY sing 247 n y 
CAR CAP OWY sing 248 n n 
OBC CAT OWY sing 249 n n 
CAS CAT OWY doub 250 n y 
CAS CAQ OWY sing 251 n y 
CAP CAQ OWY sing 252 n n 
CAP NAK OWY sing 253 n n 
CAT CAU OWY sing 254 n y 
CAQ CAW OWY doub 255 n y 
CAL NAK OWY sing 256 n n 
CAL CAM OWY sing 257 n n 
CAU CAV OWY doub 258 n y 
NAK CAJ OWY sing 259 n n 
CAW CAV OWY sing 260 n y 
CAN CAM OWY sing 261 n n 
CAM NAH OWY sing 262 n n 
CAO CAJ OWY sing 263 n n 
CAJ CAI OWY sing 264 n n 
NAH CAI OWY sing 265 n n 
NAH CAG OWY sing 266 n n 
CAG CAB OWY sing 267 n n 
CAB CAC OWY doub 268 n y 
CAB CAA OWY sing 269 n y 
CAC CAD OWY sing 270 n y 
CAA CAF OWY doub 271 n y 
CAD CAE OWY doub 272 n y 
CAF CAE OWY sing 273 n y 
CBI H1 OWY sing 274 n n 
CBI H2 OWY sing 275 n n 
CBI H3 OWY sing 276 n n 
CBG H4 OWY sing 277 n n 
CBG H5 OWY sing 278 n n 
CBH H6 OWY sing 279 n n 
CBH H7 OWY sing 280 n n 
CBJ H8 OWY sing 281 n n 
CBJ H9 OWY sing 282 n n 
CBJ H10 OWY sing 283 n n 
CBA H11 OWY sing 284 n n 
CBB H12 OWY sing 285 n n 
CAY H13 OWY sing 286 n n 
CAX H14 OWY sing 287 n n 
CAP H15 OWY sing 288 n n 
CAS H16 OWY sing 289 n n 
OBC H17 OWY sing 290 n n 
CAU H18 OWY sing 291 n n 
CAV H19 OWY sing 292 n n 
CAW H20 OWY sing 293 n n 
CAJ H22 OWY sing 294 n n 
CAI H23 OWY sing 295 n n 
CAI H24 OWY sing 296 n n 
CAO H25 OWY sing 297 n n 
CAO H26 OWY sing 298 n n 
CAO H27 OWY sing 299 n n 
CAL H28 OWY sing 300 n n 
CAL H29 OWY sing 301 n n 
CAM H30 OWY sing 302 n n 
CAN H31 OWY sing 303 n n 
CAN H32 OWY sing 304 n n 
CAN H33 OWY sing 305 n n 
CAG H35 OWY sing 306 n n 
CAG H36 OWY sing 307 n n 
CAA H37 OWY sing 308 n n 
CAF H38 OWY sing 309 n n 
CAE H39 OWY sing 310 n n 
CAD H40 OWY sing 311 n n 
CAC H41 OWY sing 312 n n 
#
_atom_sites.entry_id                     6PT3 
_atom_sites.fract_transf_matrix[1][1]    0.020373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007037 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 OWY A 1 1201 501 OWY DPI . 
D 2 OWY B 1 1201 501 OWY DPI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBI OWY . . . D 2 -0.324 -2.694 -29.993 1 123.27 ? CBI OWY 1201 B 1 
HETATM 2 C CBG OWY . . . D 2 0.945 -2.349 -29.215 1 123.74 ? CBG OWY 1201 B 1 
HETATM 3 N NBF OWY . . . D 2 1.762 -3.39 -28.921 1 124.67 ? NBF OWY 1201 B 1 
HETATM 4 C CBH OWY . . . D 2 1.523 -4.081 -27.785 1 127.24 ? CBH OWY 1201 B 1 
HETATM 5 C CBJ OWY . . . D 2 2.174 -3.502 -26.504 1 127.6 ? CBJ OWY 1201 B 1 
HETATM 6 C CBD OWY . . . D 2 2.819 -3.765 -29.704 1 122.55 ? CBD OWY 1201 B 1 
HETATM 7 O OBE OWY . . . D 2 3.506 -4.692 -29.369 1 124.16 ? OBE OWY 1201 B 1 
HETATM 8 C CAZ OWY . . . D 2 3.242 -3.1 -30.958 1 118.72 ? CAZ OWY 1201 B 1 
HETATM 9 C CBA OWY . . . D 2 4.422 -2.321 -30.969 1 116.24 ? CBA OWY 1201 B 1 
HETATM 10 C CBB OWY . . . D 2 4.855 -1.703 -32.158 1 113.86 ? CBB OWY 1201 B 1 
HETATM 11 C CAY OWY . . . D 2 2.547 -3.326 -32.164 1 117.49 ? CAY OWY 1201 B 1 
HETATM 12 C CAX OWY . . . D 2 2.973 -2.706 -33.349 1 115.9 ? CAX OWY 1201 B 1 
HETATM 13 C CAR OWY . . . D 2 4.141 -1.904 -33.358 1 114.01 ? CAR OWY 1201 B 1 
HETATM 14 C CAP OWY . . . D 2 4.601 -1.23 -34.602 1 112.14 ? CAP OWY 1201 B 1 
HETATM 15 C CAQ OWY . . . D 2 3.591 -0.204 -34.988 1 112.07 ? CAQ OWY 1201 B 1 
HETATM 16 C CAS OWY . . . D 2 3.661 1.055 -34.357 1 112 ? CAS OWY 1201 B 1 
HETATM 17 C CAT OWY . . . D 2 2.702 2.047 -34.616 1 112.77 ? CAT OWY 1201 B 1 
HETATM 18 O OBC OWY . . . D 2 2.789 3.259 -33.968 1 114.53 ? OBC OWY 1201 B 1 
HETATM 19 C CAU OWY . . . D 2 1.667 1.786 -35.539 1 112.33 ? CAU OWY 1201 B 1 
HETATM 20 C CAV OWY . . . D 2 1.576 0.528 -36.174 1 112.07 ? CAV OWY 1201 B 1 
HETATM 21 C CAW OWY . . . D 2 2.525 -0.469 -35.886 1 111.83 ? CAW OWY 1201 B 1 
HETATM 22 N NAK OWY . . . D 2 4.961 -2.146 -35.696 1 108.82 ? NAK OWY 1201 B 1 
HETATM 23 C CAJ OWY . . . D 2 5.553 -1.517 -36.863 1 108.6 ? CAJ OWY 1201 B 1 
HETATM 24 C CAI OWY . . . D 2 5.532 -2.577 -37.994 1 109.05 ? CAI OWY 1201 B 1 
HETATM 25 C CAO OWY . . . D 2 6.956 -0.893 -36.688 1 109.22 ? CAO OWY 1201 B 1 
HETATM 26 C CAL OWY . . . D 2 5.783 -3.308 -35.252 1 105.97 ? CAL OWY 1201 B 1 
HETATM 27 C CAM OWY . . . D 2 5.65 -4.427 -36.336 1 104.88 ? CAM OWY 1201 B 1 
HETATM 28 C CAN OWY . . . D 2 4.222 -4.978 -36.305 1 102.76 ? CAN OWY 1201 B 1 
HETATM 29 N NAH OWY . . . D 2 6.083 -3.889 -37.622 1 107.75 ? NAH OWY 1201 B 1 
HETATM 30 C CAG OWY . . . D 2 5.917 -4.909 -38.71 1 107.55 ? CAG OWY 1201 B 1 
HETATM 31 C CAB OWY . . . D 2 6.453 -4.576 -40.051 1 105.66 ? CAB OWY 1201 B 1 
HETATM 32 C CAA OWY . . . D 2 5.638 -4.819 -41.169 1 105.66 ? CAA OWY 1201 B 1 
HETATM 33 C CAF OWY . . . D 2 6.099 -4.514 -42.463 1 106.09 ? CAF OWY 1201 B 1 
HETATM 34 C CAE OWY . . . D 2 7.396 -4.002 -42.655 1 106.25 ? CAE OWY 1201 B 1 
HETATM 35 C CAD OWY . . . D 2 8.227 -3.794 -41.537 1 106.24 ? CAD OWY 1201 B 1 
HETATM 36 C CAC OWY . . . D 2 7.759 -4.082 -40.242 1 105.39 ? CAC OWY 1201 B 1 
#
_model_server_stats.io_time_ms              123 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#