data_6PTO # _model_server_result.job_id naGhzq9F468zywJJlSFgBQ _model_server_result.datetime_utc '2024-12-13 17:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":1001}' # _entry.id 6PTO # _exptl.entry_id 6PTO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 KA N N ? 13 LA N N ? 13 MA N N ? 13 NA N N ? 13 OA N N ? 13 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 265 m CYS 265 1_555 N SG CYS 289 m CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 N SG CYS 474 m CYS 474 1_555 N SG CYS 522 m CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 Y SG CYS 265 7 CYS 265 1_555 Y SG CYS 289 7 CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 Y SG CYS 474 7 CYS 474 1_555 Y SG CYS 522 7 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 JA SG CYS 265 K CYS 265 1_555 JA SG CYS 289 K CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 JA SG CYS 474 K CYS 474 1_555 JA SG CYS 522 K CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6PTO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 13 ATP h 1 901 901 ATP ATP . LA 13 ATP i 1 1001 1001 ATP ATP . MA 13 ATP k 1 801 801 ATP ATP . NA 13 ATP 2 1 901 901 ATP ATP . OA 13 ATP 3 1 1001 1001 ATP ATP . PA 13 ATP 5 1 801 801 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . OA 13 232.944 286.658 39.749 1 100.47 ? PG ATP 1001 3 1 HETATM 2 O O1G ATP . . . OA 13 231.704 286.914 40.55 1 100.47 ? O1G ATP 1001 3 1 HETATM 3 O O2G ATP . . . OA 13 233.797 285.522 40.224 1 100.47 ? O2G ATP 1001 3 1 HETATM 4 O O3G ATP . . . OA 13 232.727 286.689 38.269 1 100.47 ? O3G ATP 1001 3 1 HETATM 5 P PB ATP . . . OA 13 234.098 288.487 41.432 1 100.47 ? PB ATP 1001 3 1 HETATM 6 O O1B ATP . . . OA 13 233.756 287.38 42.391 1 100.47 ? O1B ATP 1001 3 1 HETATM 7 O O2B ATP . . . OA 13 233.461 289.823 41.633 1 100.47 ? O2B ATP 1001 3 1 HETATM 8 O O3B ATP . . . OA 13 233.853 287.975 39.947 1 100.47 ? O3B ATP 1001 3 1 HETATM 9 P PA ATP . . . OA 13 236.191 288.643 43.049 1 100.47 ? PA ATP 1001 3 1 HETATM 10 O O1A ATP . . . OA 13 236.432 287.206 43.368 1 100.47 ? O1A ATP 1001 3 1 HETATM 11 O O2A ATP . . . OA 13 235.2 289.404 43.895 1 100.47 ? O2A ATP 1001 3 1 HETATM 12 O O3A ATP . . . OA 13 235.682 288.707 41.523 1 100.47 ? O3A ATP 1001 3 1 HETATM 13 O O5' ATP . . . OA 13 237.634 289.356 43.114 1 100.47 ? O5' ATP 1001 3 1 HETATM 14 C C5' ATP . . . OA 13 238.562 288.83 44.071 1 100.47 ? C5' ATP 1001 3 1 HETATM 15 C C4' ATP . . . OA 13 239.81 289.692 44.266 1 100.47 ? C4' ATP 1001 3 1 HETATM 16 O O4' ATP . . . OA 13 240.246 290.301 43.052 1 100.47 ? O4' ATP 1001 3 1 HETATM 17 C C3' ATP . . . OA 13 239.597 290.808 45.273 1 100.47 ? C3' ATP 1001 3 1 HETATM 18 O O3' ATP . . . OA 13 240.429 290.59 46.41 1 100.47 ? O3' ATP 1001 3 1 HETATM 19 C C2' ATP . . . OA 13 240.002 292.093 44.591 1 100.47 ? C2' ATP 1001 3 1 HETATM 20 O O2' ATP . . . OA 13 241.018 292.754 45.34 1 100.47 ? O2' ATP 1001 3 1 HETATM 21 C C1' ATP . . . OA 13 240.551 291.678 43.246 1 100.47 ? C1' ATP 1001 3 1 HETATM 22 N N9 ATP . . . OA 13 239.816 292.409 42.215 1 100.47 ? N9 ATP 1001 3 1 HETATM 23 C C8 ATP . . . OA 13 238.939 291.864 41.361 1 100.47 ? C8 ATP 1001 3 1 HETATM 24 N N7 ATP . . . OA 13 238.437 292.804 40.531 1 100.47 ? N7 ATP 1001 3 1 HETATM 25 C C5 ATP . . . OA 13 238.996 293.972 40.874 1 100.47 ? C5 ATP 1001 3 1 HETATM 26 C C6 ATP . . . OA 13 238.909 295.365 40.405 1 100.47 ? C6 ATP 1001 3 1 HETATM 27 N N6 ATP . . . OA 13 238.096 295.702 39.381 1 100.47 ? N6 ATP 1001 3 1 HETATM 28 N N1 ATP . . . OA 13 239.665 296.284 41.031 1 100.47 ? N1 ATP 1001 3 1 HETATM 29 C C2 ATP . . . OA 13 240.47 295.957 42.051 1 100.47 ? C2 ATP 1001 3 1 HETATM 30 N N3 ATP . . . OA 13 240.602 294.713 42.525 1 100.47 ? N3 ATP 1001 3 1 HETATM 31 C C4 ATP . . . OA 13 239.904 293.703 41.986 1 100.47 ? C4 ATP 1001 3 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 507 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #