data_6PTO
#
_model_server_result.job_id            J_34BUENsbZJH7ArFUISzQ 
_model_server_result.datetime_utc      '2024-12-13 17:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"PA","auth_seq_id":801}' 
#
_entry.id    6PTO 
#
_exptl.entry_id    6PTO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    36-meric 
_pdbx_struct_assembly.oligomeric_count      36 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 KA N N 
? 13 LA N N 
? 13 MA N N 
? 13 NA N N 
? 13 OA N N 
? 13 PA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 N SG CYS 265 m CYS 265 1_555 N SG CYS 289 m CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 N SG CYS 474 m CYS 474 1_555 N SG CYS 522 m CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 Y SG CYS 265 7 CYS 265 1_555 Y SG CYS 289 7 CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 Y SG CYS 474 7 CYS 474 1_555 Y SG CYS 522 7 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 JA SG CYS 265 K CYS 265 1_555 JA SG CYS 289 K CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 JA SG CYS 474 K CYS 474 1_555 JA SG CYS 522 K CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6PTO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
KA 13 ATP h 1 901 901 ATP ATP . 
LA 13 ATP i 1 1001 1001 ATP ATP . 
MA 13 ATP k 1 801 801 ATP ATP . 
NA 13 ATP 2 1 901 901 ATP ATP . 
OA 13 ATP 3 1 1001 1001 ATP ATP . 
PA 13 ATP 5 1 801 801 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . PA 13 245.207 259.246 32.177 1 108.79 ? PG ATP 801 5 1 
HETATM 2 O O1G ATP . . . PA 13 244.85 259.628 33.562 1 108.79 ? O1G ATP 801 5 1 
HETATM 3 O O2G ATP . . . PA 13 244.119 258.49 31.458 1 108.79 ? O2G ATP 801 5 1 
HETATM 4 O O3G ATP . . . PA 13 245.877 260.347 31.402 1 108.79 ? O3G ATP 801 5 1 
HETATM 5 P PB ATP . . . PA 13 245.896 256.753 32.911 1 108.79 ? PB ATP 801 5 1 
HETATM 6 O O1B ATP . . . PA 13 245.446 255.991 31.697 1 108.79 ? O1B ATP 801 5 1 
HETATM 7 O O2B ATP . . . PA 13 244.989 256.908 34.09 1 108.79 ? O2B ATP 801 5 1 
HETATM 8 O O3B ATP . . . PA 13 246.369 258.19 32.432 1 108.79 ? O3B ATP 801 5 1 
HETATM 9 P PA ATP . . . PA 13 247.157 254.524 33.708 1 108.79 ? PA ATP 801 5 1 
HETATM 10 O O1A ATP . . . PA 13 247.469 253.79 32.43 1 108.79 ? O1A ATP 801 5 1 
HETATM 11 O O2A ATP . . . PA 13 245.895 254.235 34.471 1 108.79 ? O2A ATP 801 5 1 
HETATM 12 O O3A ATP . . . PA 13 247.241 256.094 33.445 1 108.79 ? O3A ATP 801 5 1 
HETATM 13 O O5' ATP . . . PA 13 248.386 254.279 34.692 1 108.79 ? O5' ATP 801 5 1 
HETATM 14 C C5' ATP . . . PA 13 248.843 252.946 34.775 1 108.79 ? C5' ATP 801 5 1 
HETATM 15 C C4' ATP . . . PA 13 250.341 252.99 34.948 1 108.79 ? C4' ATP 801 5 1 
HETATM 16 O O4' ATP . . . PA 13 250.917 254.049 34.181 1 108.79 ? O4' ATP 801 5 1 
HETATM 17 C C3' ATP . . . PA 13 250.694 253.272 36.389 1 108.79 ? C3' ATP 801 5 1 
HETATM 18 O O3' ATP . . . PA 13 251.179 252.073 36.992 1 108.79 ? O3' ATP 801 5 1 
HETATM 19 C C2' ATP . . . PA 13 251.806 254.286 36.313 1 108.79 ? C2' ATP 801 5 1 
HETATM 20 O O2' ATP . . . PA 13 252.955 253.817 37.014 1 108.79 ? O2' ATP 801 5 1 
HETATM 21 C C1' ATP . . . PA 13 252.137 254.369 34.838 1 108.79 ? C1' ATP 801 5 1 
HETATM 22 N N9 ATP . . . PA 13 252.691 255.688 34.464 1 108.79 ? N9 ATP 801 5 1 
HETATM 23 C C8 ATP . . . PA 13 252.174 256.561 33.591 1 108.79 ? C8 ATP 801 5 1 
HETATM 24 N N7 ATP . . . PA 13 252.972 257.651 33.489 1 108.79 ? N7 ATP 801 5 1 
HETATM 25 C C5 ATP . . . PA 13 254.02 257.474 34.308 1 108.79 ? C5 ATP 801 5 1 
HETATM 26 C C6 ATP . . . PA 13 255.232 258.225 34.689 1 108.79 ? C6 ATP 801 5 1 
HETATM 27 N N6 ATP . . . PA 13 255.514 259.438 34.17 1 108.79 ? N6 ATP 801 5 1 
HETATM 28 N N1 ATP . . . PA 13 256.058 257.665 35.582 1 108.79 ? N1 ATP 801 5 1 
HETATM 29 C C2 ATP . . . PA 13 255.832 256.468 36.112 1 108.79 ? C2 ATP 801 5 1 
HETATM 30 N N3 ATP . . . PA 13 254.758 255.739 35.818 1 108.79 ? N3 ATP 801 5 1 
HETATM 31 C C4 ATP . . . PA 13 253.833 256.173 34.938 1 108.79 ? C4 ATP 801 5 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    504 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#