data_6PTQ
#
_model_server_result.job_id            q54NOHk8u4OrRtEdE3hrEw 
_model_server_result.datetime_utc      '2024-11-13 09:06:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ptq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6PTQ 
#
_exptl.entry_id    6PTQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.63 
_cell.angle_gamma         90 
_cell.entry_id            6PTQ 
_cell.length_a            83.69 
_cell.length_b            83.4 
_cell.length_c            86.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PTQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 5 A CYS 13 1_555 C CBA EL5 . A EL5 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
covale ? covale2 B SG CYS 5 B CYS 13 1_555 E CBA EL5 . B EL5 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     6PTQ 
_atom_sites.fract_transf_matrix[1][1]    0.011949 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003797 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012079 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EL5 A 1 501 522 EL5 BLA . 
D 3 BEN B 1 601 601 BEN BEN . 
E 2 EL5 B 1 602 522 EL5 BLA . 
F 4 HOH A 1 601 30 HOH HOH . 
F 4 HOH A 2 602 28 HOH HOH . 
F 4 HOH A 3 603 119 HOH HOH . 
F 4 HOH A 4 604 92 HOH HOH . 
F 4 HOH A 5 605 35 HOH HOH . 
F 4 HOH A 6 606 62 HOH HOH . 
F 4 HOH A 7 607 61 HOH HOH . 
F 4 HOH A 8 608 6 HOH HOH . 
F 4 HOH A 9 609 94 HOH HOH . 
F 4 HOH A 10 610 60 HOH HOH . 
F 4 HOH A 11 611 25 HOH HOH . 
F 4 HOH A 12 612 116 HOH HOH . 
F 4 HOH A 13 613 65 HOH HOH . 
F 4 HOH A 14 614 8 HOH HOH . 
F 4 HOH A 15 615 46 HOH HOH . 
F 4 HOH A 16 616 44 HOH HOH . 
F 4 HOH A 17 617 103 HOH HOH . 
F 4 HOH A 18 618 22 HOH HOH . 
F 4 HOH A 19 619 112 HOH HOH . 
F 4 HOH A 20 620 97 HOH HOH . 
F 4 HOH A 21 621 27 HOH HOH . 
F 4 HOH A 22 622 105 HOH HOH . 
F 4 HOH A 23 623 64 HOH HOH . 
F 4 HOH A 24 624 33 HOH HOH . 
F 4 HOH A 25 625 63 HOH HOH . 
F 4 HOH A 26 626 80 HOH HOH . 
F 4 HOH A 27 627 96 HOH HOH . 
F 4 HOH A 28 628 1 HOH HOH . 
F 4 HOH A 29 629 2 HOH HOH . 
F 4 HOH A 30 630 122 HOH HOH . 
F 4 HOH A 31 631 24 HOH HOH . 
F 4 HOH A 32 632 36 HOH HOH . 
F 4 HOH A 33 633 73 HOH HOH . 
F 4 HOH A 34 634 42 HOH HOH . 
F 4 HOH A 35 635 14 HOH HOH . 
F 4 HOH A 36 636 26 HOH HOH . 
F 4 HOH A 37 637 7 HOH HOH . 
F 4 HOH A 38 638 57 HOH HOH . 
F 4 HOH A 39 639 106 HOH HOH . 
F 4 HOH A 40 640 82 HOH HOH . 
F 4 HOH A 41 641 18 HOH HOH . 
F 4 HOH A 42 642 19 HOH HOH . 
F 4 HOH A 43 643 15 HOH HOH . 
F 4 HOH A 44 644 20 HOH HOH . 
F 4 HOH A 45 645 32 HOH HOH . 
F 4 HOH A 46 646 21 HOH HOH . 
F 4 HOH A 47 647 11 HOH HOH . 
F 4 HOH A 48 648 58 HOH HOH . 
F 4 HOH A 49 649 102 HOH HOH . 
F 4 HOH A 50 650 118 HOH HOH . 
F 4 HOH A 51 651 37 HOH HOH . 
F 4 HOH A 52 652 115 HOH HOH . 
F 4 HOH A 53 653 101 HOH HOH . 
F 4 HOH A 54 654 23 HOH HOH . 
F 4 HOH A 55 655 31 HOH HOH . 
F 4 HOH A 56 656 88 HOH HOH . 
F 4 HOH A 57 657 39 HOH HOH . 
F 4 HOH A 58 658 113 HOH HOH . 
F 4 HOH A 59 659 117 HOH HOH . 
F 4 HOH A 60 660 75 HOH HOH . 
F 4 HOH A 61 661 98 HOH HOH . 
F 4 HOH A 62 662 95 HOH HOH . 
F 4 HOH A 63 663 72 HOH HOH . 
F 4 HOH A 64 664 81 HOH HOH . 
F 4 HOH A 65 665 86 HOH HOH . 
F 4 HOH A 66 666 40 HOH HOH . 
F 4 HOH A 67 667 107 HOH HOH . 
F 4 HOH A 68 668 89 HOH HOH . 
F 4 HOH A 69 669 38 HOH HOH . 
G 4 HOH B 1 701 84 HOH HOH . 
G 4 HOH B 2 702 85 HOH HOH . 
G 4 HOH B 3 703 59 HOH HOH . 
G 4 HOH B 4 704 111 HOH HOH . 
G 4 HOH B 5 705 66 HOH HOH . 
G 4 HOH B 6 706 55 HOH HOH . 
G 4 HOH B 7 707 13 HOH HOH . 
G 4 HOH B 8 708 53 HOH HOH . 
G 4 HOH B 9 709 4 HOH HOH . 
G 4 HOH B 10 710 69 HOH HOH . 
G 4 HOH B 11 711 48 HOH HOH . 
G 4 HOH B 12 712 45 HOH HOH . 
G 4 HOH B 13 713 5 HOH HOH . 
G 4 HOH B 14 714 74 HOH HOH . 
G 4 HOH B 15 715 51 HOH HOH . 
G 4 HOH B 16 716 17 HOH HOH . 
G 4 HOH B 17 717 110 HOH HOH . 
G 4 HOH B 18 718 3 HOH HOH . 
G 4 HOH B 19 719 29 HOH HOH . 
G 4 HOH B 20 720 54 HOH HOH . 
G 4 HOH B 21 721 9 HOH HOH . 
G 4 HOH B 22 722 52 HOH HOH . 
G 4 HOH B 23 723 123 HOH HOH . 
G 4 HOH B 24 724 68 HOH HOH . 
G 4 HOH B 25 725 12 HOH HOH . 
G 4 HOH B 26 726 50 HOH HOH . 
G 4 HOH B 27 727 49 HOH HOH . 
G 4 HOH B 28 728 67 HOH HOH . 
G 4 HOH B 29 729 124 HOH HOH . 
G 4 HOH B 30 730 16 HOH HOH . 
G 4 HOH B 31 731 91 HOH HOH . 
G 4 HOH B 32 732 43 HOH HOH . 
G 4 HOH B 33 733 34 HOH HOH . 
G 4 HOH B 34 734 71 HOH HOH . 
G 4 HOH B 35 735 77 HOH HOH . 
G 4 HOH B 36 736 121 HOH HOH . 
G 4 HOH B 37 737 104 HOH HOH . 
G 4 HOH B 38 738 10 HOH HOH . 
G 4 HOH B 39 739 120 HOH HOH . 
G 4 HOH B 40 740 79 HOH HOH . 
G 4 HOH B 41 741 78 HOH HOH . 
G 4 HOH B 42 742 100 HOH HOH . 
G 4 HOH B 43 743 41 HOH HOH . 
G 4 HOH B 44 744 56 HOH HOH . 
G 4 HOH B 45 745 87 HOH HOH . 
G 4 HOH B 46 746 70 HOH HOH . 
G 4 HOH B 47 747 99 HOH HOH . 
G 4 HOH B 48 748 109 HOH HOH . 
G 4 HOH B 49 749 108 HOH HOH . 
G 4 HOH B 50 750 114 HOH HOH . 
G 4 HOH B 51 751 76 HOH HOH . 
G 4 HOH B 52 752 93 HOH HOH . 
G 4 HOH B 53 753 90 HOH HOH . 
G 4 HOH B 54 754 47 HOH HOH . 
G 4 HOH B 55 755 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . D 3 -54.857 -16.676 -27.182 1 100.31 ? C1 BEN 601 B 1 
HETATM 2 C C2 BEN . . . D 3 -55.775 -15.639 -27.004 1 95.52 ? C2 BEN 601 B 1 
HETATM 3 C C3 BEN . . . D 3 -57.058 -15.736 -27.519 1 90.76 ? C3 BEN 601 B 1 
HETATM 4 C C4 BEN . . . D 3 -57.446 -16.862 -28.209 1 89.89 ? C4 BEN 601 B 1 
HETATM 5 C C5 BEN . . . D 3 -56.554 -17.896 -28.389 1 87.46 ? C5 BEN 601 B 1 
HETATM 6 C C6 BEN . . . D 3 -55.269 -17.811 -27.879 1 85.48 ? C6 BEN 601 B 1 
HETATM 7 C C BEN . . . D 3 -53.469 -16.59 -26.627 1 90.91 ? C BEN 601 B 1 
HETATM 8 N N1 BEN . . . D 3 -52.508 -17.418 -26.912 1 78.08 ? N1 BEN 601 B 1 
HETATM 9 N N2 BEN . . . D 3 -53.178 -15.606 -25.739 1 83.35 ? N2 BEN 601 B 1 
HETATM 10 H H2 BEN . . . D 3 -55.52 -14.864 -26.535 1 114.62 ? H2 BEN 601 B 1 
HETATM 11 H H3 BEN . . . D 3 -57.668 -15.027 -27.396 1 108.91 ? H3 BEN 601 B 1 
HETATM 12 H H4 BEN . . . D 3 -58.321 -16.925 -28.559 1 107.86 ? H4 BEN 601 B 1 
HETATM 13 H H5 BEN . . . D 3 -56.819 -18.668 -28.862 1 104.95 ? H5 BEN 601 B 1 
HETATM 14 H H6 BEN . . . D 3 -54.668 -18.524 -28.009 1 102.58 ? H6 BEN 601 B 1 
HETATM 15 H HN1 BEN . . . D 3 -52.708 -18.005 -27.453 1 93.7 ? HN1 BEN 601 B 1 
HETATM 16 H HN21 BEN . . . D 3 -52.366 -15.555 -25.386 1 100.01 ? HN21 BEN 601 B 1 
HETATM 17 H HN22 BEN . . . D 3 -53.801 -15.017 -25.512 1 100.01 ? HN22 BEN 601 B 1 
#
_model_server_stats.io_time_ms              130 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           17 
#