data_6PU4 # _model_server_result.job_id ULN1tcs-fBDsfrxPfFNfyA _model_server_result.datetime_utc '2025-01-09 19:54:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6PU4 # _exptl.entry_id 6PU4 _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PU4 _cell.length_a 67.48 _cell.length_b 67.48 _cell.length_c 101.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 139 1_555 A SG CYS 123 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 178 A CYS 283 1_555 A SG CYS 249 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A OD1 ASP 39 A ASP 144 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc2 A OD2 ASP 39 A ASP 144 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 A O HIS 69 A HIS 174 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PU4 _atom_sites.fract_transf_matrix[1][1] 0.014819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 2 CA CA . D 2 CA A 1 403 3 CA CA . E 2 CA A 1 404 4 CA CA . F 3 HOH A 1 501 85 HOH HOH . F 3 HOH A 2 502 24 HOH HOH . F 3 HOH A 3 503 18 HOH HOH . F 3 HOH A 4 504 46 HOH HOH . F 3 HOH A 5 505 39 HOH HOH . F 3 HOH A 6 506 62 HOH HOH . F 3 HOH A 7 507 63 HOH HOH . F 3 HOH A 8 508 68 HOH HOH . F 3 HOH A 9 509 92 HOH HOH . F 3 HOH A 10 510 35 HOH HOH . F 3 HOH A 11 511 83 HOH HOH . F 3 HOH A 12 512 90 HOH HOH . F 3 HOH A 13 513 84 HOH HOH . F 3 HOH A 14 514 66 HOH HOH . F 3 HOH A 15 515 5 HOH HOH . F 3 HOH A 16 516 65 HOH HOH . F 3 HOH A 17 517 32 HOH HOH . F 3 HOH A 18 518 40 HOH HOH . F 3 HOH A 19 519 57 HOH HOH . F 3 HOH A 20 520 89 HOH HOH . F 3 HOH A 21 521 1 HOH HOH . F 3 HOH A 22 522 2 HOH HOH . F 3 HOH A 23 523 49 HOH HOH . F 3 HOH A 24 524 11 HOH HOH . F 3 HOH A 25 525 38 HOH HOH . F 3 HOH A 26 526 56 HOH HOH . F 3 HOH A 27 527 91 HOH HOH . F 3 HOH A 28 528 42 HOH HOH . F 3 HOH A 29 529 22 HOH HOH . F 3 HOH A 30 530 61 HOH HOH . F 3 HOH A 31 531 45 HOH HOH . F 3 HOH A 32 532 9 HOH HOH . F 3 HOH A 33 533 37 HOH HOH . F 3 HOH A 34 534 33 HOH HOH . F 3 HOH A 35 535 53 HOH HOH . F 3 HOH A 36 536 19 HOH HOH . F 3 HOH A 37 537 27 HOH HOH . F 3 HOH A 38 538 4 HOH HOH . F 3 HOH A 39 539 44 HOH HOH . F 3 HOH A 40 540 64 HOH HOH . F 3 HOH A 41 541 58 HOH HOH . F 3 HOH A 42 542 10 HOH HOH . F 3 HOH A 43 543 70 HOH HOH . F 3 HOH A 44 544 54 HOH HOH . F 3 HOH A 45 545 55 HOH HOH . F 3 HOH A 46 546 43 HOH HOH . F 3 HOH A 47 547 59 HOH HOH . F 3 HOH A 48 548 41 HOH HOH . F 3 HOH A 49 549 20 HOH HOH . F 3 HOH A 50 550 69 HOH HOH . F 3 HOH A 51 551 34 HOH HOH . F 3 HOH A 52 552 36 HOH HOH . F 3 HOH A 53 553 23 HOH HOH . F 3 HOH A 54 554 29 HOH HOH . F 3 HOH A 55 555 72 HOH HOH . F 3 HOH A 56 556 47 HOH HOH . F 3 HOH A 57 557 16 HOH HOH . F 3 HOH A 58 558 28 HOH HOH . F 3 HOH A 59 559 30 HOH HOH . F 3 HOH A 60 560 14 HOH HOH . F 3 HOH A 61 561 15 HOH HOH . F 3 HOH A 62 562 71 HOH HOH . F 3 HOH A 63 563 6 HOH HOH . F 3 HOH A 64 564 8 HOH HOH . F 3 HOH A 65 565 13 HOH HOH . F 3 HOH A 66 566 7 HOH HOH . F 3 HOH A 67 567 48 HOH HOH . F 3 HOH A 68 568 17 HOH HOH . F 3 HOH A 69 569 75 HOH HOH . F 3 HOH A 70 570 26 HOH HOH . F 3 HOH A 71 571 21 HOH HOH . F 3 HOH A 72 572 51 HOH HOH . F 3 HOH A 73 573 31 HOH HOH . F 3 HOH A 74 574 3 HOH HOH . F 3 HOH A 75 575 81 HOH HOH . F 3 HOH A 76 576 12 HOH HOH . F 3 HOH A 77 577 60 HOH HOH . F 3 HOH A 78 578 25 HOH HOH . F 3 HOH A 79 579 52 HOH HOH . F 3 HOH A 80 580 67 HOH HOH . F 3 HOH A 81 581 50 HOH HOH . F 3 HOH A 82 582 77 HOH HOH . F 3 HOH A 83 583 86 HOH HOH . F 3 HOH A 84 584 87 HOH HOH . F 3 HOH A 85 585 79 HOH HOH . F 3 HOH A 86 586 88 HOH HOH . F 3 HOH A 87 587 80 HOH HOH . F 3 HOH A 88 588 74 HOH HOH . F 3 HOH A 89 589 78 HOH HOH . F 3 HOH A 90 590 76 HOH HOH . F 3 HOH A 91 591 73 HOH HOH . F 3 HOH A 92 592 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.242 _atom_site.Cartn_y -26.601 _atom_site.Cartn_z 0.639 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #