data_6PU6 # _model_server_result.job_id h0rJYwjXeL5EJFhXVEeWJg _model_server_result.datetime_utc '2024-10-20 13:01:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6PU6 # _exptl.entry_id 6PU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.67 _cell.angle_gamma 90 _cell.entry_id 6PU6 _cell.length_a 47.58 _cell.length_b 139 _cell.length_c 54.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 237 n n P O2P NCN doub 238 n n P O3P NCN sing 239 n n P O5' NCN sing 240 n n O1P HOP1 NCN sing 241 n n O5' C5' NCN sing 242 n n C5' C4' NCN sing 243 n n C5' "H5'1" NCN sing 244 n n C5' "H5'2" NCN sing 245 n n C4' O4' NCN sing 246 n n C4' C3' NCN sing 247 n n C4' H4' NCN sing 248 n n O4' C1' NCN sing 249 n n C3' O3' NCN sing 250 n n C3' C2' NCN sing 251 n n C3' H3' NCN sing 252 n n O3' "HO'3" NCN sing 253 n n C2' O2' NCN sing 254 n n C2' C1' NCN sing 255 n n C2' H2' NCN sing 256 n n O2' "HO'2" NCN sing 257 n n C1' N1 NCN sing 258 n n C1' H1' NCN sing 259 n n N1 C6 NCN sing 260 n y N1 C2 NCN doub 261 n y C6 C5 NCN doub 262 n y C6 H6 NCN sing 263 n n C5 C4 NCN sing 264 n y C5 H5 NCN sing 265 n n C4 C3 NCN doub 266 n y C4 H4 NCN sing 267 n n C3 C2 NCN sing 268 n y C3 C7 NCN sing 269 n n C2 H2 NCN sing 270 n n C7 O7 NCN sing 271 n n C7 O8 NCN doub 272 n n O7 HO7 NCN sing 273 n n # _atom_sites.entry_id 6PU6 _atom_sites.fract_transf_matrix[1][1] 0.021017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008351 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCN A 1 401 401 NCN NCN . D 3 RBZ B 1 401 401 RBZ RBZ . E 4 NIO B 1 402 501 NIO NIO . F 5 HOH A 1 501 11 HOH HOH . F 5 HOH A 2 502 27 HOH HOH . F 5 HOH A 3 503 10 HOH HOH . F 5 HOH A 4 504 24 HOH HOH . F 5 HOH A 5 505 13 HOH HOH . F 5 HOH A 6 506 53 HOH HOH . F 5 HOH A 7 507 4 HOH HOH . F 5 HOH A 8 508 2 HOH HOH . F 5 HOH A 9 509 26 HOH HOH . F 5 HOH A 10 510 42 HOH HOH . F 5 HOH A 11 511 50 HOH HOH . F 5 HOH A 12 512 46 HOH HOH . F 5 HOH A 13 513 8 HOH HOH . F 5 HOH A 14 514 36 HOH HOH . F 5 HOH A 15 515 3 HOH HOH . F 5 HOH A 16 516 15 HOH HOH . F 5 HOH A 17 517 18 HOH HOH . F 5 HOH A 18 518 30 HOH HOH . F 5 HOH A 19 519 47 HOH HOH . F 5 HOH A 20 520 41 HOH HOH . F 5 HOH A 21 521 48 HOH HOH . F 5 HOH A 22 522 38 HOH HOH . F 5 HOH A 23 523 39 HOH HOH . F 5 HOH A 24 524 23 HOH HOH . F 5 HOH A 25 525 29 HOH HOH . F 5 HOH A 26 526 33 HOH HOH . F 5 HOH A 27 527 17 HOH HOH . F 5 HOH A 28 528 51 HOH HOH . F 5 HOH A 29 529 28 HOH HOH . G 5 HOH B 1 501 21 HOH HOH . G 5 HOH B 2 502 22 HOH HOH . G 5 HOH B 3 503 34 HOH HOH . G 5 HOH B 4 504 43 HOH HOH . G 5 HOH B 5 505 9 HOH HOH . G 5 HOH B 6 506 25 HOH HOH . G 5 HOH B 7 507 6 HOH HOH . G 5 HOH B 8 508 32 HOH HOH . G 5 HOH B 9 509 37 HOH HOH . G 5 HOH B 10 510 7 HOH HOH . G 5 HOH B 11 511 1 HOH HOH . G 5 HOH B 12 512 20 HOH HOH . G 5 HOH B 13 513 44 HOH HOH . G 5 HOH B 14 514 52 HOH HOH . G 5 HOH B 15 515 19 HOH HOH . G 5 HOH B 16 516 14 HOH HOH . G 5 HOH B 17 517 40 HOH HOH . G 5 HOH B 18 518 12 HOH HOH . G 5 HOH B 19 519 5 HOH HOH . G 5 HOH B 20 520 35 HOH HOH . G 5 HOH B 21 521 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . C 2 24.158 -16.226 11.943 1 48.38 ? P NCN 401 A 1 HETATM 2 O O1P NCN . . . C 2 24.677 -14.839 11.714 1 51.61 ? O1P NCN 401 A 1 HETATM 3 O O2P NCN . . . C 2 24.855 -17.377 11.27 1 65.04 ? O2P NCN 401 A 1 HETATM 4 O O3P NCN . . . C 2 24.017 -16.536 13.461 1 48.48 ? O3P NCN 401 A 1 HETATM 5 O O5' NCN . . . C 2 22.704 -16.2 11.305 1 56.79 ? O5' NCN 401 A 1 HETATM 6 C C5' NCN . . . C 2 21.766 -15.209 11.701 1 53.7 ? C5' NCN 401 A 1 HETATM 7 C C4' NCN . . . C 2 21.618 -14.134 10.658 1 57.87 ? C4' NCN 401 A 1 HETATM 8 O O4' NCN . . . C 2 21.289 -14.754 9.402 1 58.83 ? O4' NCN 401 A 1 HETATM 9 C C3' NCN . . . C 2 20.472 -13.186 10.91 1 54.63 ? C3' NCN 401 A 1 HETATM 10 O O3' NCN . . . C 2 20.648 -12.014 10.121 1 59.34 ? O3' NCN 401 A 1 HETATM 11 C C2' NCN . . . C 2 19.269 -13.987 10.399 1 58.08 ? C2' NCN 401 A 1 HETATM 12 O O2' NCN . . . C 2 18.24 -13.177 9.863 1 57.69 ? O2' NCN 401 A 1 HETATM 13 C C1' NCN . . . C 2 19.885 -14.907 9.317 1 59.31 ? C1' NCN 401 A 1 HETATM 14 N N1 NCN . . . C 2 19.565 -16.362 9.429 1 56.63 ? N1 NCN 401 A 1 HETATM 15 C C6 NCN . . . C 2 19.978 -17.156 8.377 1 62.3 ? C6 NCN 401 A 1 HETATM 16 C C5 NCN . . . C 2 19.731 -18.555 8.351 1 56.38 ? C5 NCN 401 A 1 HETATM 17 C C4 NCN . . . C 2 19.079 -19.163 9.39 1 53.48 ? C4 NCN 401 A 1 HETATM 18 C C3 NCN . . . C 2 18.649 -18.42 10.458 1 53.76 ? C3 NCN 401 A 1 HETATM 19 C C2 NCN . . . C 2 18.904 -16.995 10.471 1 57.3 ? C2 NCN 401 A 1 HETATM 20 C C7 NCN . . . C 2 17.959 -19.145 11.538 1 51.34 ? C7 NCN 401 A 1 HETATM 21 O O7 NCN . . . C 2 17.488 -18.529 12.578 1 49.46 ? O7 NCN 401 A 1 HETATM 22 O O8 NCN . . . C 2 17.835 -20.391 11.474 1 55.99 ? O8 NCN 401 A 1 HETATM 23 H "H5'1" NCN . . . C 2 20.904 -15.631 11.843 1 64.23 ? "H5'1" NCN 401 A 1 HETATM 24 H "H5'2" NCN . . . C 2 22.067 -14.805 12.53 1 64.23 ? "H5'2" NCN 401 A 1 HETATM 25 H H4' NCN . . . C 2 22.452 -13.645 10.581 1 69.24 ? H4' NCN 401 A 1 HETATM 26 H H3' NCN . . . C 2 20.381 -12.971 11.852 1 65.35 ? H3' NCN 401 A 1 HETATM 27 H "HO'3" NCN . . . C 2 20.61 -11.326 10.62 1 71.01 ? "HO'3" NCN 401 A 1 HETATM 28 H H2' NCN . . . C 2 18.94 -14.549 11.118 1 69.49 ? H2' NCN 401 A 1 HETATM 29 H "HO'2" NCN . . . C 2 18.493 -12.366 9.875 1 69.02 ? "HO'2" NCN 401 A 1 HETATM 30 H H1' NCN . . . C 2 19.577 -14.587 8.455 1 70.97 ? H1' NCN 401 A 1 HETATM 31 H H6 NCN . . . C 2 20.431 -16.762 7.666 1 74.55 ? H6 NCN 401 A 1 HETATM 32 H H5 NCN . . . C 2 20.014 -19.061 7.624 1 67.45 ? H5 NCN 401 A 1 HETATM 33 H H4 NCN . . . C 2 18.928 -20.08 9.371 1 63.98 ? H4 NCN 401 A 1 HETATM 34 H H2 NCN . . . C 2 18.617 -16.492 11.198 1 68.56 ? H2 NCN 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #