data_6PUB # _model_server_result.job_id Q-omZsoNFYtdHFzTAU-jTQ _model_server_result.datetime_utc '2024-10-15 00:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6PUB # _exptl.entry_id 6PUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.526 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CRYSTAL VIOLET' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PUB _cell.length_a 83.255 _cell.length_b 83.255 _cell.length_c 161.812 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -41.6275 -72.100945 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 41.6275 -72.100945 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 N3 1' _chem_comp.formula_weight 372.526 _chem_comp.id CVI _chem_comp.mon_nstd_flag . _chem_comp.name 'CRYSTAL VIOLET' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVI doub 70 n n C1 C8 CVI sing 71 n n C1 C14 CVI sing 72 n n C2 C3 CVI sing 73 n n C2 C7 CVI sing 74 n n C3 C4 CVI doub 75 n n C3 H31 CVI sing 76 n n C4 C5 CVI sing 77 n n C4 H41 CVI sing 78 n n C5 C6 CVI sing 79 n n C5 N1 CVI doub 80 n n C6 C7 CVI doub 81 n n C6 H61 CVI sing 82 n n C7 H71 CVI sing 83 n n C8 C9 CVI doub 84 n y C8 C13 CVI sing 85 n y C9 C10 CVI sing 86 n y C9 H91 CVI sing 87 n n C10 C11 CVI doub 88 n y C10 H101 CVI sing 89 n n C11 C12 CVI sing 90 n y C11 N2 CVI sing 91 n n C12 C13 CVI doub 92 n y C12 H121 CVI sing 93 n n C13 H131 CVI sing 94 n n C14 C15 CVI doub 95 n y C14 C19 CVI sing 96 n y C15 C16 CVI sing 97 n y C15 H151 CVI sing 98 n n C16 C17 CVI doub 99 n y C16 H161 CVI sing 100 n n C17 C18 CVI sing 101 n y C17 N3 CVI sing 102 n n C18 C19 CVI doub 103 n y C18 H181 CVI sing 104 n n C19 H191 CVI sing 105 n n C20 N1 CVI sing 106 n n C20 H201 CVI sing 107 n n C20 H202 CVI sing 108 n n C20 H203 CVI sing 109 n n C21 N1 CVI sing 110 n n C21 H211 CVI sing 111 n n C21 H212 CVI sing 112 n n C21 H213 CVI sing 113 n n C22 N2 CVI sing 114 n n C22 H221 CVI sing 115 n n C22 H222 CVI sing 116 n n C22 H223 CVI sing 117 n n C23 N2 CVI sing 118 n n C23 H231 CVI sing 119 n n C23 H232 CVI sing 120 n n C23 H233 CVI sing 121 n n C24 N3 CVI sing 122 n n C24 H241 CVI sing 123 n n C24 H242 CVI sing 124 n n C24 H243 CVI sing 125 n n C25 N3 CVI sing 126 n n C25 H251 CVI sing 127 n n C25 H252 CVI sing 128 n n C25 H253 CVI sing 129 n n # _atom_sites.entry_id 6PUB _atom_sites.fract_transf_matrix[1][1] 0.012011 _atom_sites.fract_transf_matrix[1][2] 0.006935 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CVI A 1 301 301 CVI CVI . C 3 SO4 A 1 302 302 SO4 SO4 . D 3 SO4 A 1 303 303 SO4 SO4 . E 3 SO4 A 1 304 304 SO4 SO4 . F 3 SO4 A 1 305 305 SO4 SO4 . G 3 SO4 A 1 306 306 SO4 SO4 . H 3 SO4 A 1 307 307 SO4 SO4 . I 4 CL A 1 308 308 CL CL . J 4 CL A 1 309 309 CL CL . K 4 CL A 1 310 310 CL CL . L 4 CL A 1 311 311 CL CL . M 4 CL A 1 312 312 CL CL . N 3 SO4 A 1 313 313 SO4 SO4 . O 3 SO4 A 1 314 314 SO4 SO4 . P 5 HOH A 1 401 63 HOH HOH . P 5 HOH A 2 402 35 HOH HOH . P 5 HOH A 3 403 85 HOH HOH . P 5 HOH A 4 404 81 HOH HOH . P 5 HOH A 5 405 64 HOH HOH . P 5 HOH A 6 406 71 HOH HOH . P 5 HOH A 7 407 6 HOH HOH . P 5 HOH A 8 408 62 HOH HOH . P 5 HOH A 9 409 36 HOH HOH . P 5 HOH A 10 410 28 HOH HOH . P 5 HOH A 11 411 29 HOH HOH . P 5 HOH A 12 412 68 HOH HOH . P 5 HOH A 13 413 34 HOH HOH . P 5 HOH A 14 414 25 HOH HOH . P 5 HOH A 15 415 11 HOH HOH . P 5 HOH A 16 416 15 HOH HOH . P 5 HOH A 17 417 33 HOH HOH . P 5 HOH A 18 418 27 HOH HOH . P 5 HOH A 19 419 52 HOH HOH . P 5 HOH A 20 420 32 HOH HOH . P 5 HOH A 21 421 23 HOH HOH . P 5 HOH A 22 422 9 HOH HOH . P 5 HOH A 23 423 21 HOH HOH . P 5 HOH A 24 424 3 HOH HOH . P 5 HOH A 25 425 26 HOH HOH . P 5 HOH A 26 426 5 HOH HOH . P 5 HOH A 27 427 16 HOH HOH . P 5 HOH A 28 428 19 HOH HOH . P 5 HOH A 29 429 13 HOH HOH . P 5 HOH A 30 430 57 HOH HOH . P 5 HOH A 31 431 7 HOH HOH . P 5 HOH A 32 432 4 HOH HOH . P 5 HOH A 33 433 40 HOH HOH . P 5 HOH A 34 434 14 HOH HOH . P 5 HOH A 35 435 73 HOH HOH . P 5 HOH A 36 436 30 HOH HOH . P 5 HOH A 37 437 56 HOH HOH . P 5 HOH A 38 438 12 HOH HOH . P 5 HOH A 39 439 58 HOH HOH . P 5 HOH A 40 440 39 HOH HOH . P 5 HOH A 41 441 65 HOH HOH . P 5 HOH A 42 442 54 HOH HOH . P 5 HOH A 43 443 18 HOH HOH . P 5 HOH A 44 444 8 HOH HOH . P 5 HOH A 45 445 72 HOH HOH . P 5 HOH A 46 446 66 HOH HOH . P 5 HOH A 47 447 60 HOH HOH . P 5 HOH A 48 448 41 HOH HOH . P 5 HOH A 49 449 51 HOH HOH . P 5 HOH A 50 450 80 HOH HOH . P 5 HOH A 51 451 53 HOH HOH . P 5 HOH A 52 452 17 HOH HOH . P 5 HOH A 53 453 46 HOH HOH . P 5 HOH A 54 454 75 HOH HOH . P 5 HOH A 55 455 76 HOH HOH . P 5 HOH A 56 456 24 HOH HOH . P 5 HOH A 57 457 61 HOH HOH . P 5 HOH A 58 458 44 HOH HOH . P 5 HOH A 59 459 47 HOH HOH . P 5 HOH A 60 460 37 HOH HOH . P 5 HOH A 61 461 20 HOH HOH . P 5 HOH A 62 462 2 HOH HOH . P 5 HOH A 63 463 42 HOH HOH . P 5 HOH A 64 464 45 HOH HOH . P 5 HOH A 65 465 31 HOH HOH . P 5 HOH A 66 466 70 HOH HOH . P 5 HOH A 67 467 55 HOH HOH . P 5 HOH A 68 468 10 HOH HOH . P 5 HOH A 69 469 50 HOH HOH . P 5 HOH A 70 470 43 HOH HOH . P 5 HOH A 71 471 67 HOH HOH . P 5 HOH A 72 472 74 HOH HOH . P 5 HOH A 73 473 77 HOH HOH . P 5 HOH A 74 474 1 HOH HOH . P 5 HOH A 75 475 38 HOH HOH . P 5 HOH A 76 476 78 HOH HOH . P 5 HOH A 77 477 79 HOH HOH . P 5 HOH A 78 478 69 HOH HOH . P 5 HOH A 79 479 84 HOH HOH . P 5 HOH A 80 480 82 HOH HOH . P 5 HOH A 81 481 22 HOH HOH . P 5 HOH A 82 482 83 HOH HOH . P 5 HOH A 83 483 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CVI . . . B 2 10.462 -30.01 -30.471 1 58.77 ? C1 CVI 301 A 1 HETATM 2 C C2 CVI . . . B 2 11.237 -29.453 -29.29 1 59.21 ? C2 CVI 301 A 1 HETATM 3 C C3 CVI . . . B 2 11.209 -28.099 -28.964 1 59.37 ? C3 CVI 301 A 1 HETATM 4 C C4 CVI . . . B 2 11.919 -27.597 -27.882 1 59.56 ? C4 CVI 301 A 1 HETATM 5 C C5 CVI . . . B 2 12.684 -28.445 -27.095 1 59.68 ? C5 CVI 301 A 1 HETATM 6 C C6 CVI . . . B 2 12.73 -29.799 -27.407 1 59.65 ? C6 CVI 301 A 1 HETATM 7 C C7 CVI . . . B 2 12.012 -30.296 -28.494 1 59.54 ? C7 CVI 301 A 1 HETATM 8 C C8 CVI . . . B 2 10.533 -31.478 -30.798 1 58.46 ? C8 CVI 301 A 1 HETATM 9 C C9 CVI . . . B 2 11.736 -32.03 -31.227 1 58.62 ? C9 CVI 301 A 1 HETATM 10 C C10 CVI . . . B 2 11.82 -33.38 -31.539 1 58.49 ? C10 CVI 301 A 1 HETATM 11 C C11 CVI . . . B 2 10.695 -34.187 -31.434 1 58.03 ? C11 CVI 301 A 1 HETATM 12 C C12 CVI . . . B 2 9.488 -33.644 -31.003 1 58.11 ? C12 CVI 301 A 1 HETATM 13 C C13 CVI . . . B 2 9.407 -32.289 -30.69 1 58.22 ? C13 CVI 301 A 1 HETATM 14 C C14 CVI . . . B 2 9.601 -29.164 -31.384 1 58.7 ? C14 CVI 301 A 1 HETATM 15 C C15 CVI . . . B 2 9.566 -29.451 -32.746 1 58.79 ? C15 CVI 301 A 1 HETATM 16 C C16 CVI . . . B 2 8.778 -28.696 -33.612 1 58.67 ? C16 CVI 301 A 1 HETATM 17 C C17 CVI . . . B 2 8.01 -27.646 -33.12 1 58.51 ? C17 CVI 301 A 1 HETATM 18 C C18 CVI . . . B 2 8.035 -27.358 -31.764 1 58.39 ? C18 CVI 301 A 1 HETATM 19 C C19 CVI . . . B 2 8.817 -28.116 -30.904 1 58.45 ? C19 CVI 301 A 1 HETATM 20 C C20 CVI . . . B 2 14.183 -28.817 -25.202 1 59.78 ? C20 CVI 301 A 1 HETATM 21 C C21 CVI . . . B 2 13.309 -26.521 -25.732 1 59.78 ? C21 CVI 301 A 1 HETATM 22 C C22 CVI . . . B 2 9.736 -36.212 -32.489 1 57.6 ? C22 CVI 301 A 1 HETATM 23 C C23 CVI . . . B 2 11.98 -36.295 -31.357 1 57.34 ? C23 CVI 301 A 1 HETATM 24 C C24 CVI . . . B 2 6.751 -25.563 -33.542 1 57.94 ? C24 CVI 301 A 1 HETATM 25 C C25 CVI . . . B 2 6.825 -27.382 -35.283 1 58.4 ? C25 CVI 301 A 1 HETATM 26 N N1 CVI . . . B 2 13.375 -27.943 -26.038 1 59.8 ? N1 CVI 301 A 1 HETATM 27 N N2 CVI . . . B 2 10.796 -35.547 -31.748 1 57.58 ? N2 CVI 301 A 1 HETATM 28 N N3 CVI . . . B 2 7.209 -26.875 -33.973 1 58.28 ? N3 CVI 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #