data_6PUU # _model_server_result.job_id 3rAoh0EbkHckX2mNRZGHkQ _model_server_result.datetime_utc '2024-11-26 10:13:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6puu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1601}' # _entry.id 6PUU # _exptl.entry_id 6PUU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 621.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PUU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 850 A GLU 843 1_555 F CA CA . A CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A OE1 GLN 853 A GLN 846 1_555 F CA CA . A CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc3 B OE2 GLU 850 B GLU 843 1_555 H CA CA . B CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc4 B OE1 GLN 853 B GLN 846 1_555 H CA CA . B CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 C OE2 GLU 850 C GLU 843 1_555 J CA CA . C CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc6 C OE1 GLN 853 C GLN 846 1_555 J CA CA . C CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc7 D OE2 GLU 850 D GLU 843 1_555 L CA CA . D CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc8 D OE1 GLN 853 D GLN 846 1_555 L CA CA . D CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'C15 H21 Br N5 O13 P2 1' _chem_comp.formula_weight 621.204 _chem_comp.id CV1 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8 ,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 8-BROMO-CYCLIC-ADP-RIBOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CV1 doub 70 n y N1 C6 CV1 sing 71 n y N1 C1D CV1 sing 72 n n BR1 C8 CV1 sing 73 n n C2 N3 CV1 sing 74 n y N3 C4 CV1 doub 75 n y C4 C5 CV1 sing 76 n y C4 N9 CV1 sing 77 n y C5 C6 CV1 doub 78 n y C5 N7 CV1 sing 79 n y C6 N6 CV1 sing 80 n n N7 C8 CV1 doub 81 n y C8 N9 CV1 sing 82 n y N9 C1' CV1 sing 83 n n PA O1A CV1 doub 84 n n PA O2A CV1 sing 85 n n PA O3A CV1 sing 86 n n PA O5' CV1 sing 87 n n PB O1B CV1 sing 88 n n PB O2B CV1 doub 89 n n PB O3A CV1 sing 90 n n PB O5D CV1 sing 91 n n C1' C2' CV1 sing 92 n n C1' O4' CV1 sing 93 n n C1D C2D CV1 sing 94 n n C1D O4D CV1 sing 95 n n C2' O2' CV1 sing 96 n n C2' C3' CV1 sing 97 n n C2D O2D CV1 sing 98 n n C2D C3D CV1 sing 99 n n C3' O3' CV1 sing 100 n n C3' C4' CV1 sing 101 n n C3D O3D CV1 sing 102 n n C3D C4D CV1 sing 103 n n C4' O4' CV1 sing 104 n n C4' C5' CV1 sing 105 n n C4D O4D CV1 sing 106 n n C4D C5D CV1 sing 107 n n C5' O5' CV1 sing 108 n n C5D O5D CV1 sing 109 n n C2 H2 CV1 sing 110 n n N6 HN6 CV1 sing 111 n n N6 HN6A CV1 sing 112 n n C1' H1' CV1 sing 113 n n C1D H1D CV1 sing 114 n n C2' H2' CV1 sing 115 n n O2' HO2' CV1 sing 116 n n C2D H2D CV1 sing 117 n n O2D HO2D CV1 sing 118 n n C3' H3' CV1 sing 119 n n O3' HO3' CV1 sing 120 n n C3D H3D CV1 sing 121 n n O3D HO3D CV1 sing 122 n n C4' H4' CV1 sing 123 n n C4D H4D CV1 sing 124 n n C5' H5' CV1 sing 125 n n C5' "H5'A" CV1 sing 126 n n C5D H5D CV1 sing 127 n n C5D H5DA CV1 sing 128 n n O2A H2A CV1 sing 129 n n O1B H1B CV1 sing 130 n n # _atom_sites.entry_id 6PUU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CV1 A 1 1601 1601 CV1 CV1 . F 3 CA A 1 1602 1603 CA CA . G 2 CV1 B 1 1601 1601 CV1 CV1 . H 3 CA B 1 1602 1603 CA CA . I 2 CV1 C 1 1601 1601 CV1 CV1 . J 3 CA C 1 1602 1603 CA CA . K 2 CV1 D 1 1601 1601 CV1 CV1 . L 3 CA D 1 1602 1603 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CV1 . . . E 2 133.948 124.608 111.882 1 171.94 ? N1 CV1 1601 A 1 HETATM 2 BR BR1 CV1 . . . E 2 137.79 119.762 112.845 1 171.94 ? BR1 CV1 1601 A 1 HETATM 3 C C2 CV1 . . . E 2 134.17 124.28 110.562 1 171.94 ? C2 CV1 1601 A 1 HETATM 4 N N3 CV1 . . . E 2 135.034 123.364 110.209 1 171.94 ? N3 CV1 1601 A 1 HETATM 5 C C4 CV1 . . . E 2 135.562 122.613 111.205 1 171.94 ? C4 CV1 1601 A 1 HETATM 6 C C5 CV1 . . . E 2 135.287 122.773 112.539 1 171.94 ? C5 CV1 1601 A 1 HETATM 7 C C6 CV1 . . . E 2 134.391 123.795 112.889 1 171.94 ? C6 CV1 1601 A 1 HETATM 8 N N6 CV1 . . . E 2 133.942 124.032 114.127 1 171.94 ? N6 CV1 1601 A 1 HETATM 9 N N7 CV1 . . . E 2 135.988 121.847 113.295 1 171.94 ? N7 CV1 1601 A 1 HETATM 10 C C8 CV1 . . . E 2 136.661 121.159 112.394 1 171.94 ? C8 CV1 1601 A 1 HETATM 11 N N9 CV1 . . . E 2 136.446 121.576 111.102 1 171.94 ? N9 CV1 1601 A 1 HETATM 12 P PA CV1 . . . E 2 138.082 125.536 106.922 1 171.94 ? PA CV1 1601 A 1 HETATM 13 P PB CV1 . . . E 2 136.057 127.397 107.949 1 171.94 ? PB CV1 1601 A 1 HETATM 14 C C1' CV1 . . . E 2 137.033 121.029 109.893 1 171.94 ? C1' CV1 1601 A 1 HETATM 15 O O1A CV1 . . . E 2 137.751 125.819 105.494 1 171.94 ? O1A CV1 1601 A 1 HETATM 16 O O1B CV1 . . . E 2 137.032 128.486 108.254 1 171.94 ? O1B CV1 1601 A 1 HETATM 17 C C1D CV1 . . . E 2 133.221 125.865 112.226 1 171.94 ? C1D CV1 1601 A 1 HETATM 18 C C2' CV1 . . . E 2 136.263 121.395 108.612 1 171.94 ? C2' CV1 1601 A 1 HETATM 19 O O2' CV1 . . . E 2 135.258 120.442 108.345 1 171.94 ? O2' CV1 1601 A 1 HETATM 20 O O2A CV1 . . . E 2 139.345 126.104 107.48 1 171.94 ? O2A CV1 1601 A 1 HETATM 21 O O2B CV1 . . . E 2 135.184 127.545 106.747 1 171.94 ? O2B CV1 1601 A 1 HETATM 22 C C2D CV1 . . . E 2 134.069 126.802 113.082 1 171.94 ? C2D CV1 1601 A 1 HETATM 23 O O2D CV1 . . . E 2 133.271 127.493 114.03 1 171.94 ? O2D CV1 1601 A 1 HETATM 24 C C3' CV1 . . . E 2 137.386 121.381 107.573 1 171.94 ? C3' CV1 1601 A 1 HETATM 25 O O3' CV1 . . . E 2 137.639 120.065 107.095 1 171.94 ? O3' CV1 1601 A 1 HETATM 26 O O3A CV1 . . . E 2 136.855 126.01 107.839 1 171.94 ? O3A CV1 1601 A 1 HETATM 27 C C3D CV1 . . . E 2 134.709 127.744 112.058 1 171.94 ? C3D CV1 1601 A 1 HETATM 28 O O3D CV1 . . . E 2 134.995 129.025 112.605 1 171.94 ? O3D CV1 1601 A 1 HETATM 29 C C4' CV1 . . . E 2 138.579 121.923 108.371 1 171.94 ? C4' CV1 1601 A 1 HETATM 30 O O4' CV1 . . . E 2 138.33 121.561 109.755 1 171.94 ? O4' CV1 1601 A 1 HETATM 31 C C4D CV1 . . . E 2 133.623 127.828 110.977 1 171.94 ? C4D CV1 1601 A 1 HETATM 32 O O4D CV1 . . . E 2 132.928 126.562 111.015 1 171.94 ? O4D CV1 1601 A 1 HETATM 33 C C5' CV1 . . . E 2 138.811 123.412 108.284 1 171.94 ? C5' CV1 1601 A 1 HETATM 34 O O5' CV1 . . . E 2 138.056 123.951 107.17 1 171.94 ? O5' CV1 1601 A 1 HETATM 35 C C5D CV1 . . . E 2 134.108 128.083 109.571 1 171.94 ? C5D CV1 1601 A 1 HETATM 36 O O5D CV1 . . . E 2 135.144 127.124 109.239 1 171.94 ? O5D CV1 1601 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 164 _model_server_stats.query_time_ms 1189 _model_server_stats.encode_time_ms 57 _model_server_stats.element_count 36 #