data_6PUU
#
_model_server_result.job_id            X_HlIrWiXwt9ZVABKvon7A 
_model_server_result.datetime_utc      '2024-11-22 22:47:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6puu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1601}' 
#
_entry.id    6PUU 
#
_exptl.entry_id    6PUU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              621.204 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PUU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PUU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 850 A GLU 843 1_555 F CA CA . A CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc2 A OE1 GLN 853 A GLN 846 1_555 F CA CA . A CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc3 B OE2 GLU 850 B GLU 843 1_555 H CA CA . B CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc4 B OE1 GLN 853 B GLN 846 1_555 H CA CA . B CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc5 C OE2 GLU 850 C GLU 843 1_555 J CA CA . C CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc6 C OE1 GLN 853 C GLN 846 1_555 J CA CA . C CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc7 D OE2 GLU 850 D GLU 843 1_555 L CA CA . D CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc8 D OE1 GLN 853 D GLN 846 1_555 L CA CA . D CA 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
#
_chem_comp.formula           'C15 H21 Br N5 O13 P2 1' 
_chem_comp.formula_weight    621.204 
_chem_comp.id                CV1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,3R,4S,5R,13R,14S,15R,16R)-24-amino-18-bromo-3,4,14,15-tetrahydroxy-7,9,11,25,26-pentaoxa-17,19,22-triaza-1-azonia-8 ,10-diphosphapentacyclo[18.3.1.1^2,5^.1^13,16^.0^17,21^]hexacosa-1(24),18,20,22-tetraene-8,10-diolate 8,10-dioxide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     8-BROMO-CYCLIC-ADP-RIBOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CV1 doub 70 n y 
N1 C6 CV1 sing 71 n y 
N1 C1D CV1 sing 72 n n 
BR1 C8 CV1 sing 73 n n 
C2 N3 CV1 sing 74 n y 
N3 C4 CV1 doub 75 n y 
C4 C5 CV1 sing 76 n y 
C4 N9 CV1 sing 77 n y 
C5 C6 CV1 doub 78 n y 
C5 N7 CV1 sing 79 n y 
C6 N6 CV1 sing 80 n n 
N7 C8 CV1 doub 81 n y 
C8 N9 CV1 sing 82 n y 
N9 C1' CV1 sing 83 n n 
PA O1A CV1 doub 84 n n 
PA O2A CV1 sing 85 n n 
PA O3A CV1 sing 86 n n 
PA O5' CV1 sing 87 n n 
PB O1B CV1 sing 88 n n 
PB O2B CV1 doub 89 n n 
PB O3A CV1 sing 90 n n 
PB O5D CV1 sing 91 n n 
C1' C2' CV1 sing 92 n n 
C1' O4' CV1 sing 93 n n 
C1D C2D CV1 sing 94 n n 
C1D O4D CV1 sing 95 n n 
C2' O2' CV1 sing 96 n n 
C2' C3' CV1 sing 97 n n 
C2D O2D CV1 sing 98 n n 
C2D C3D CV1 sing 99 n n 
C3' O3' CV1 sing 100 n n 
C3' C4' CV1 sing 101 n n 
C3D O3D CV1 sing 102 n n 
C3D C4D CV1 sing 103 n n 
C4' O4' CV1 sing 104 n n 
C4' C5' CV1 sing 105 n n 
C4D O4D CV1 sing 106 n n 
C4D C5D CV1 sing 107 n n 
C5' O5' CV1 sing 108 n n 
C5D O5D CV1 sing 109 n n 
C2 H2 CV1 sing 110 n n 
N6 HN6 CV1 sing 111 n n 
N6 HN6A CV1 sing 112 n n 
C1' H1' CV1 sing 113 n n 
C1D H1D CV1 sing 114 n n 
C2' H2' CV1 sing 115 n n 
O2' HO2' CV1 sing 116 n n 
C2D H2D CV1 sing 117 n n 
O2D HO2D CV1 sing 118 n n 
C3' H3' CV1 sing 119 n n 
O3' HO3' CV1 sing 120 n n 
C3D H3D CV1 sing 121 n n 
O3D HO3D CV1 sing 122 n n 
C4' H4' CV1 sing 123 n n 
C4D H4D CV1 sing 124 n n 
C5' H5' CV1 sing 125 n n 
C5' "H5'A" CV1 sing 126 n n 
C5D H5D CV1 sing 127 n n 
C5D H5DA CV1 sing 128 n n 
O2A H2A CV1 sing 129 n n 
O1B H1B CV1 sing 130 n n 
#
_atom_sites.entry_id                     6PUU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CV1 A 1 1601 1601 CV1 CV1 . 
F 3 CA A 1 1602 1603 CA CA . 
G 2 CV1 B 1 1601 1601 CV1 CV1 . 
H 3 CA B 1 1602 1603 CA CA . 
I 2 CV1 C 1 1601 1601 CV1 CV1 . 
J 3 CA C 1 1602 1603 CA CA . 
K 2 CV1 D 1 1601 1601 CV1 CV1 . 
L 3 CA D 1 1602 1603 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CV1 . . . G 2 197.599 133.952 111.864 1 171.94 ? N1 CV1 1601 B 1 
HETATM 2 BR BR1 CV1 . . . G 2 202.445 137.795 112.826 1 171.94 ? BR1 CV1 1601 B 1 
HETATM 3 C C2 CV1 . . . G 2 197.927 134.174 110.543 1 171.94 ? C2 CV1 1601 B 1 
HETATM 4 N N3 CV1 . . . G 2 198.842 135.038 110.19 1 171.94 ? N3 CV1 1601 B 1 
HETATM 5 C C4 CV1 . . . G 2 199.593 135.566 111.186 1 171.94 ? C4 CV1 1601 B 1 
HETATM 6 C C5 CV1 . . . G 2 199.433 135.291 112.52 1 171.94 ? C5 CV1 1601 B 1 
HETATM 7 C C6 CV1 . . . G 2 198.411 134.395 112.87 1 171.94 ? C6 CV1 1601 B 1 
HETATM 8 N N6 CV1 . . . G 2 198.174 133.945 114.108 1 171.94 ? N6 CV1 1601 B 1 
HETATM 9 N N7 CV1 . . . G 2 200.359 135.992 113.276 1 171.94 ? N7 CV1 1601 B 1 
HETATM 10 C C8 CV1 . . . G 2 201.047 136.666 112.375 1 171.94 ? C8 CV1 1601 B 1 
HETATM 11 N N9 CV1 . . . G 2 200.63 136.45 111.083 1 171.94 ? N9 CV1 1601 B 1 
HETATM 12 P PA CV1 . . . G 2 196.67 138.086 106.903 1 171.94 ? PA CV1 1601 B 1 
HETATM 13 P PB CV1 . . . G 2 194.809 136.061 107.931 1 171.94 ? PB CV1 1601 B 1 
HETATM 14 C C1' CV1 . . . G 2 201.177 137.037 109.874 1 171.94 ? C1' CV1 1601 B 1 
HETATM 15 O O1A CV1 . . . G 2 196.387 137.755 105.475 1 171.94 ? O1A CV1 1601 B 1 
HETATM 16 O O1B CV1 . . . G 2 193.72 137.036 108.235 1 171.94 ? O1B CV1 1601 B 1 
HETATM 17 C C1D CV1 . . . G 2 196.342 133.225 112.207 1 171.94 ? C1D CV1 1601 B 1 
HETATM 18 C C2' CV1 . . . G 2 200.811 136.268 108.593 1 171.94 ? C2' CV1 1601 B 1 
HETATM 19 O O2' CV1 . . . G 2 201.764 135.262 108.326 1 171.94 ? O2' CV1 1601 B 1 
HETATM 20 O O2A CV1 . . . G 2 196.102 139.349 107.462 1 171.94 ? O2A CV1 1601 B 1 
HETATM 21 O O2B CV1 . . . G 2 194.661 135.188 106.728 1 171.94 ? O2B CV1 1601 B 1 
HETATM 22 C C2D CV1 . . . G 2 195.405 134.072 113.063 1 171.94 ? C2D CV1 1601 B 1 
HETATM 23 O O2D CV1 . . . G 2 194.714 133.274 114.011 1 171.94 ? O2D CV1 1601 B 1 
HETATM 24 C C3' CV1 . . . G 2 200.825 137.39 107.554 1 171.94 ? C3' CV1 1601 B 1 
HETATM 25 O O3' CV1 . . . G 2 202.14 137.644 107.076 1 171.94 ? O3' CV1 1601 B 1 
HETATM 26 O O3A CV1 . . . G 2 196.196 136.859 107.82 1 171.94 ? O3A CV1 1601 B 1 
HETATM 27 C C3D CV1 . . . G 2 194.462 134.712 112.04 1 171.94 ? C3D CV1 1601 B 1 
HETATM 28 O O3D CV1 . . . G 2 193.181 134.998 112.586 1 171.94 ? O3D CV1 1601 B 1 
HETATM 29 C C4' CV1 . . . G 2 200.283 138.584 108.352 1 171.94 ? C4' CV1 1601 B 1 
HETATM 30 O O4' CV1 . . . G 2 200.645 138.334 109.736 1 171.94 ? O4' CV1 1601 B 1 
HETATM 31 C C4D CV1 . . . G 2 194.378 133.626 110.958 1 171.94 ? C4D CV1 1601 B 1 
HETATM 32 O O4D CV1 . . . G 2 195.644 132.932 110.996 1 171.94 ? O4D CV1 1601 B 1 
HETATM 33 C C5' CV1 . . . G 2 198.794 138.815 108.266 1 171.94 ? C5' CV1 1601 B 1 
HETATM 34 O O5' CV1 . . . G 2 198.255 138.061 107.151 1 171.94 ? O5' CV1 1601 B 1 
HETATM 35 C C5D CV1 . . . G 2 194.123 134.112 109.552 1 171.94 ? C5D CV1 1601 B 1 
HETATM 36 O O5D CV1 . . . G 2 195.082 135.148 109.221 1 171.94 ? O5D CV1 1601 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           36 
#