data_6PVI # _model_server_result.job_id wJRC7lsn8rvR3H4HZBDFtw _model_server_result.datetime_utc '2025-07-08 01:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6PVI # _exptl.entry_id 6PVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.569 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8aS,13S,13aR,14aS)-4,4,13,15,15-pentamethyl-12,13,14,14a,15,16-hexahydro-4H,8H,9H,11H-8a,13a-(epiminomethano)[1,4]dioxepino[2,3-a]indolizino[6,7-h]carbazol-17-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PVI _cell.length_a 64.903 _cell.length_b 79.91 _cell.length_c 87.687 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N3 O3' _chem_comp.formula_weight 447.569 _chem_comp.id OZ7 _chem_comp.mon_nstd_flag . _chem_comp.name (8aS,13S,13aR,14aS)-4,4,13,15,15-pentamethyl-12,13,14,14a,15,16-hexahydro-4H,8H,9H,11H-8a,13a-(epiminomethano)[1,4]dioxepino[2,3-a]indolizino[6,7-h]carbazol-17-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C OZ7 doub 328 n n C3 C2 OZ7 sing 329 n n C N OZ7 sing 330 n n C C1 OZ7 sing 331 n n N C7 OZ7 sing 332 n n C14 C13 OZ7 sing 333 n n C9 C8 OZ7 sing 334 n n C9 C1 OZ7 sing 335 n n C8 C7 OZ7 sing 336 n n C8 C13 OZ7 sing 337 n n C1 C2 OZ7 sing 338 n n C1 N1 OZ7 sing 339 n n C2 C4 OZ7 sing 340 n n C7 C10 OZ7 sing 341 n n C7 C6 OZ7 sing 342 n n C10 C11 OZ7 sing 343 n n C13 C12 OZ7 sing 344 n n C13 C15 OZ7 sing 345 n n C4 C5 OZ7 sing 346 n n C12 C11 OZ7 doub 347 n y C12 N2 OZ7 sing 348 n y C11 C17 OZ7 sing 349 n y N1 C6 OZ7 sing 350 n n N1 C5 OZ7 sing 351 n n N2 C16 OZ7 sing 352 n y C17 C16 OZ7 doub 353 n y C17 C18 OZ7 sing 354 n y C16 C21 OZ7 sing 355 n y C18 C19 OZ7 doub 356 n y C21 O1 OZ7 sing 357 n n C21 C20 OZ7 doub 358 n y C19 C20 OZ7 sing 359 n y O1 C22 OZ7 sing 360 n n C20 O2 OZ7 sing 361 n n C26 C24 OZ7 sing 362 n n C22 C23 OZ7 doub 363 n n O2 C24 OZ7 sing 364 n n C24 C23 OZ7 sing 365 n n C24 C25 OZ7 sing 366 n n C2 H1 OZ7 sing 367 n n N H2 OZ7 sing 368 n n C10 H3 OZ7 sing 369 n n C10 H4 OZ7 sing 370 n n C14 H5 OZ7 sing 371 n n C14 H6 OZ7 sing 372 n n C14 H7 OZ7 sing 373 n n C15 H8 OZ7 sing 374 n n C15 H9 OZ7 sing 375 n n C15 H10 OZ7 sing 376 n n C18 H11 OZ7 sing 377 n n C19 H12 OZ7 sing 378 n n C22 H13 OZ7 sing 379 n n C23 H14 OZ7 sing 380 n n C25 H15 OZ7 sing 381 n n C25 H16 OZ7 sing 382 n n C25 H17 OZ7 sing 383 n n C26 H18 OZ7 sing 384 n n C26 H19 OZ7 sing 385 n n C26 H20 OZ7 sing 386 n n C3 H21 OZ7 sing 387 n n C3 H22 OZ7 sing 388 n n C3 H23 OZ7 sing 389 n n C4 H24 OZ7 sing 390 n n C4 H25 OZ7 sing 391 n n C5 H26 OZ7 sing 392 n n C5 H27 OZ7 sing 393 n n C6 H28 OZ7 sing 394 n n C6 H29 OZ7 sing 395 n n C8 H30 OZ7 sing 396 n n C9 H31 OZ7 sing 397 n n C9 H32 OZ7 sing 398 n n N2 H34 OZ7 sing 399 n n # _atom_sites.entry_id 6PVI _atom_sites.fract_transf_matrix[1][1] 0.015408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OZ7 A 1 501 500 OZ7 DIO . C 3 FAD A 1 502 1 FAD FAD . D 4 HOH A 1 601 151 HOH HOH . D 4 HOH A 2 602 69 HOH HOH . D 4 HOH A 3 603 138 HOH HOH . D 4 HOH A 4 604 130 HOH HOH . D 4 HOH A 5 605 54 HOH HOH . D 4 HOH A 6 606 145 HOH HOH . D 4 HOH A 7 607 53 HOH HOH . D 4 HOH A 8 608 24 HOH HOH . D 4 HOH A 9 609 144 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 49 HOH HOH . D 4 HOH A 12 612 167 HOH HOH . D 4 HOH A 13 613 6 HOH HOH . D 4 HOH A 14 614 18 HOH HOH . D 4 HOH A 15 615 123 HOH HOH . D 4 HOH A 16 616 23 HOH HOH . D 4 HOH A 17 617 28 HOH HOH . D 4 HOH A 18 618 46 HOH HOH . D 4 HOH A 19 619 2 HOH HOH . D 4 HOH A 20 620 82 HOH HOH . D 4 HOH A 21 621 165 HOH HOH . D 4 HOH A 22 622 32 HOH HOH . D 4 HOH A 23 623 30 HOH HOH . D 4 HOH A 24 624 58 HOH HOH . D 4 HOH A 25 625 4 HOH HOH . D 4 HOH A 26 626 164 HOH HOH . D 4 HOH A 27 627 43 HOH HOH . D 4 HOH A 28 628 31 HOH HOH . D 4 HOH A 29 629 14 HOH HOH . D 4 HOH A 30 630 169 HOH HOH . D 4 HOH A 31 631 9 HOH HOH . D 4 HOH A 32 632 131 HOH HOH . D 4 HOH A 33 633 35 HOH HOH . D 4 HOH A 34 634 142 HOH HOH . D 4 HOH A 35 635 149 HOH HOH . D 4 HOH A 36 636 126 HOH HOH . D 4 HOH A 37 637 16 HOH HOH . D 4 HOH A 38 638 39 HOH HOH . D 4 HOH A 39 639 59 HOH HOH . D 4 HOH A 40 640 5 HOH HOH . D 4 HOH A 41 641 10 HOH HOH . D 4 HOH A 42 642 11 HOH HOH . D 4 HOH A 43 643 8 HOH HOH . D 4 HOH A 44 644 71 HOH HOH . D 4 HOH A 45 645 37 HOH HOH . D 4 HOH A 46 646 42 HOH HOH . D 4 HOH A 47 647 33 HOH HOH . D 4 HOH A 48 648 80 HOH HOH . D 4 HOH A 49 649 95 HOH HOH . D 4 HOH A 50 650 47 HOH HOH . D 4 HOH A 51 651 50 HOH HOH . D 4 HOH A 52 652 12 HOH HOH . D 4 HOH A 53 653 66 HOH HOH . D 4 HOH A 54 654 36 HOH HOH . D 4 HOH A 55 655 74 HOH HOH . D 4 HOH A 56 656 93 HOH HOH . D 4 HOH A 57 657 67 HOH HOH . D 4 HOH A 58 658 7 HOH HOH . D 4 HOH A 59 659 57 HOH HOH . D 4 HOH A 60 660 79 HOH HOH . D 4 HOH A 61 661 140 HOH HOH . D 4 HOH A 62 662 26 HOH HOH . D 4 HOH A 63 663 1 HOH HOH . D 4 HOH A 64 664 117 HOH HOH . D 4 HOH A 65 665 27 HOH HOH . D 4 HOH A 66 666 73 HOH HOH . D 4 HOH A 67 667 85 HOH HOH . D 4 HOH A 68 668 112 HOH HOH . D 4 HOH A 69 669 41 HOH HOH . D 4 HOH A 70 670 146 HOH HOH . D 4 HOH A 71 671 113 HOH HOH . D 4 HOH A 72 672 64 HOH HOH . D 4 HOH A 73 673 17 HOH HOH . D 4 HOH A 74 674 60 HOH HOH . D 4 HOH A 75 675 52 HOH HOH . D 4 HOH A 76 676 61 HOH HOH . D 4 HOH A 77 677 55 HOH HOH . D 4 HOH A 78 678 25 HOH HOH . D 4 HOH A 79 679 21 HOH HOH . D 4 HOH A 80 680 44 HOH HOH . D 4 HOH A 81 681 65 HOH HOH . D 4 HOH A 82 682 160 HOH HOH . D 4 HOH A 83 683 56 HOH HOH . D 4 HOH A 84 684 3 HOH HOH . D 4 HOH A 85 685 62 HOH HOH . D 4 HOH A 86 686 84 HOH HOH . D 4 HOH A 87 687 20 HOH HOH . D 4 HOH A 88 688 143 HOH HOH . D 4 HOH A 89 689 83 HOH HOH . D 4 HOH A 90 690 38 HOH HOH . D 4 HOH A 91 691 170 HOH HOH . D 4 HOH A 92 692 34 HOH HOH . D 4 HOH A 93 693 90 HOH HOH . D 4 HOH A 94 694 91 HOH HOH . D 4 HOH A 95 695 68 HOH HOH . D 4 HOH A 96 696 92 HOH HOH . D 4 HOH A 97 697 152 HOH HOH . D 4 HOH A 98 698 158 HOH HOH . D 4 HOH A 99 699 156 HOH HOH . D 4 HOH A 100 700 166 HOH HOH . D 4 HOH A 101 701 127 HOH HOH . D 4 HOH A 102 702 15 HOH HOH . D 4 HOH A 103 703 29 HOH HOH . D 4 HOH A 104 704 40 HOH HOH . D 4 HOH A 105 705 51 HOH HOH . D 4 HOH A 106 706 70 HOH HOH . D 4 HOH A 107 707 137 HOH HOH . D 4 HOH A 108 708 78 HOH HOH . D 4 HOH A 109 709 22 HOH HOH . D 4 HOH A 110 710 159 HOH HOH . D 4 HOH A 111 711 63 HOH HOH . D 4 HOH A 112 712 120 HOH HOH . D 4 HOH A 113 713 111 HOH HOH . D 4 HOH A 114 714 94 HOH HOH . D 4 HOH A 115 715 153 HOH HOH . D 4 HOH A 116 716 76 HOH HOH . D 4 HOH A 117 717 147 HOH HOH . D 4 HOH A 118 718 114 HOH HOH . D 4 HOH A 119 719 124 HOH HOH . D 4 HOH A 120 720 86 HOH HOH . D 4 HOH A 121 721 129 HOH HOH . D 4 HOH A 122 722 72 HOH HOH . D 4 HOH A 123 723 98 HOH HOH . D 4 HOH A 124 724 81 HOH HOH . D 4 HOH A 125 725 89 HOH HOH . D 4 HOH A 126 726 88 HOH HOH . D 4 HOH A 127 727 118 HOH HOH . D 4 HOH A 128 728 45 HOH HOH . D 4 HOH A 129 729 139 HOH HOH . D 4 HOH A 130 730 155 HOH HOH . D 4 HOH A 131 731 128 HOH HOH . D 4 HOH A 132 732 101 HOH HOH . D 4 HOH A 133 733 116 HOH HOH . D 4 HOH A 134 734 150 HOH HOH . D 4 HOH A 135 735 163 HOH HOH . D 4 HOH A 136 736 134 HOH HOH . D 4 HOH A 137 737 115 HOH HOH . D 4 HOH A 138 738 141 HOH HOH . D 4 HOH A 139 739 97 HOH HOH . D 4 HOH A 140 740 161 HOH HOH . D 4 HOH A 141 741 132 HOH HOH . D 4 HOH A 142 742 77 HOH HOH . D 4 HOH A 143 743 162 HOH HOH . D 4 HOH A 144 744 87 HOH HOH . D 4 HOH A 145 745 19 HOH HOH . D 4 HOH A 146 746 121 HOH HOH . D 4 HOH A 147 747 48 HOH HOH . D 4 HOH A 148 748 96 HOH HOH . D 4 HOH A 149 749 148 HOH HOH . D 4 HOH A 150 750 110 HOH HOH . D 4 HOH A 151 751 122 HOH HOH . D 4 HOH A 152 752 75 HOH HOH . D 4 HOH A 153 753 119 HOH HOH . D 4 HOH A 154 754 135 HOH HOH . D 4 HOH A 155 755 133 HOH HOH . D 4 HOH A 156 756 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OZ7 . . . B 2 -6.587 -4.415 29.457 1 101.72 ? C1 OZ7 501 A 1 HETATM 2 C C2 OZ7 . . . B 2 -5.232 -3.64 29.585 1 100.64 ? C2 OZ7 501 A 1 HETATM 3 O O1 OZ7 . . . B 2 -11.072 -11.209 32.705 1 84.94 ? O1 OZ7 501 A 1 HETATM 4 N N OZ7 . . . B 2 -8.873 -4.327 28.819 1 104.64 ? N OZ7 501 A 1 HETATM 5 C C OZ7 . . . B 2 -7.682 -3.761 28.595 1 107.16 ? C OZ7 501 A 1 HETATM 6 O O OZ7 . . . B 2 -7.513 -2.831 27.818 1 109.91 ? O OZ7 501 A 1 HETATM 7 C C10 OZ7 . . . B 2 -10.37 -5.98 29.847 1 93.1 ? C10 OZ7 501 A 1 HETATM 8 C C11 OZ7 . . . B 2 -10.378 -7.3 30.565 1 89.7 ? C11 OZ7 501 A 1 HETATM 9 C C12 OZ7 . . . B 2 -9.333 -8.161 30.565 1 88.87 ? C12 OZ7 501 A 1 HETATM 10 C C13 OZ7 . . . B 2 -7.968 -7.911 29.94 1 85.62 ? C13 OZ7 501 A 1 HETATM 11 C C14 OZ7 . . . B 2 -7.678 -9.044 28.946 1 91.88 ? C14 OZ7 501 A 1 HETATM 12 C C15 OZ7 . . . B 2 -6.942 -8.012 31.077 1 63.32 ? C15 OZ7 501 A 1 HETATM 13 C C16 OZ7 . . . B 2 -10.947 -9.162 31.742 1 84.58 ? C16 OZ7 501 A 1 HETATM 14 C C17 OZ7 . . . B 2 -11.434 -7.909 31.333 1 81.43 ? C17 OZ7 501 A 1 HETATM 15 C C18 OZ7 . . . B 2 -12.697 -7.507 31.747 1 70.63 ? C18 OZ7 501 A 1 HETATM 16 C C19 OZ7 . . . B 2 -13.453 -8.32 32.573 1 69.46 ? C19 OZ7 501 A 1 HETATM 17 C C20 OZ7 . . . B 2 -12.967 -9.55 32.997 1 74.89 ? C20 OZ7 501 A 1 HETATM 18 C C21 OZ7 . . . B 2 -11.72 -9.995 32.544 1 82.21 ? C21 OZ7 501 A 1 HETATM 19 C C22 OZ7 . . . B 2 -11.068 -11.81 33.949 1 87.64 ? C22 OZ7 501 A 1 HETATM 20 C C23 OZ7 . . . B 2 -12.145 -12.001 34.683 1 86.84 ? C23 OZ7 501 A 1 HETATM 21 C C24 OZ7 . . . B 2 -13.548 -11.638 34.285 1 76.6 ? C24 OZ7 501 A 1 HETATM 22 C C25 OZ7 . . . B 2 -14.446 -11.686 35.51 1 66.47 ? C25 OZ7 501 A 1 HETATM 23 C C26 OZ7 . . . B 2 -14.048 -12.574 33.197 1 77.32 ? C26 OZ7 501 A 1 HETATM 24 C C3 OZ7 . . . B 2 -4.554 -3.215 28.286 1 97.27 ? C3 OZ7 501 A 1 HETATM 25 C C4 OZ7 . . . B 2 -5.555 -2.464 30.509 1 102.08 ? C4 OZ7 501 A 1 HETATM 26 C C5 OZ7 . . . B 2 -6.778 -2.931 31.288 1 100.74 ? C5 OZ7 501 A 1 HETATM 27 C C6 OZ7 . . . B 2 -8.359 -4.836 31.088 1 97.5 ? C6 OZ7 501 A 1 HETATM 28 C C7 OZ7 . . . B 2 -8.94 -5.421 29.795 1 98.26 ? C7 OZ7 501 A 1 HETATM 29 C C8 OZ7 . . . B 2 -7.949 -6.515 29.236 1 96.66 ? C8 OZ7 501 A 1 HETATM 30 C C9 OZ7 . . . B 2 -6.527 -5.916 29.096 1 97.36 ? C9 OZ7 501 A 1 HETATM 31 N N1 OZ7 . . . B 2 -7.008 -4.316 30.863 1 100.68 ? N1 OZ7 501 A 1 HETATM 32 N N2 OZ7 . . . B 2 -9.658 -9.302 31.265 1 87.14 ? N2 OZ7 501 A 1 HETATM 33 O O2 OZ7 . . . B 2 -13.69 -10.216 33.976 1 71.52 ? O2 OZ7 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #