data_6PWD # _model_server_result.job_id ODYp8Ivqmon4bUdsyqWlVA _model_server_result.datetime_utc '2024-11-29 08:52:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6PWD # _exptl.entry_id 6PWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PWD _cell.length_a 134.953 _cell.length_b 134.953 _cell.length_c 124.489 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6PWD _atom_sites.fract_transf_matrix[1][1] 0.00741 _atom_sites.fract_transf_matrix[1][2] 0.004278 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 1 EDO EDO . C 2 EDO A 1 302 2 EDO EDO . D 2 EDO A 1 303 3 EDO EDO . E 2 EDO A 1 304 4 EDO EDO . F 2 EDO A 1 305 5 EDO EDO . G 2 EDO A 1 306 6 EDO EDO . H 3 SO4 A 1 307 1 SO4 SO4 . I 4 HOH A 1 401 17 HOH HOH . I 4 HOH A 2 402 6 HOH HOH . I 4 HOH A 3 403 16 HOH HOH . I 4 HOH A 4 404 20 HOH HOH . I 4 HOH A 5 405 12 HOH HOH . I 4 HOH A 6 406 1 HOH HOH . I 4 HOH A 7 407 9 HOH HOH . I 4 HOH A 8 408 8 HOH HOH . I 4 HOH A 9 409 11 HOH HOH . I 4 HOH A 10 410 2 HOH HOH . I 4 HOH A 11 411 14 HOH HOH . I 4 HOH A 12 412 21 HOH HOH . I 4 HOH A 13 413 10 HOH HOH . I 4 HOH A 14 414 4 HOH HOH . I 4 HOH A 15 415 23 HOH HOH . I 4 HOH A 16 416 22 HOH HOH . I 4 HOH A 17 417 19 HOH HOH . I 4 HOH A 18 418 3 HOH HOH . I 4 HOH A 19 419 7 HOH HOH . I 4 HOH A 20 420 5 HOH HOH . I 4 HOH A 21 421 13 HOH HOH . I 4 HOH A 22 422 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -17.12 17.886 61.514 1 80.96 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 2 -16.92 18.315 62.866 1 105.75 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 2 -16.348 16.595 61.268 1 68.95 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 2 -15.041 16.698 61.846 1 79.05 ? O2 EDO 303 A 1 HETATM 5 H H11 EDO . . . D 2 -16.777 18.66 60.825 1 97.25 ? H11 EDO 303 A 1 HETATM 6 H H12 EDO . . . D 2 -18.184 17.722 61.331 1 97.25 ? H12 EDO 303 A 1 HETATM 7 H HO1 EDO . . . D 2 -17.402 19.139 63.017 1 127 ? HO1 EDO 303 A 1 HETATM 8 H H21 EDO . . . D 2 -16.264 16.412 60.195 1 82.84 ? H21 EDO 303 A 1 HETATM 9 H H22 EDO . . . D 2 -16.883 15.753 61.711 1 82.84 ? H22 EDO 303 A 1 HETATM 10 H HO2 EDO . . . D 2 -14.56 15.871 61.707 1 94.96 ? HO2 EDO 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #