data_6PWM
#
_model_server_result.job_id            3P39beT-hTItlz6w4-uXgw 
_model_server_result.datetime_utc      '2024-11-25 05:52:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pwm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    6PWM 
#
_exptl.entry_id    6PWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.61 
_cell.angle_gamma         90 
_cell.entry_id            6PWM 
_cell.length_a            92.261 
_cell.length_b            81.661 
_cell.length_c            105.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,J 1 1 
B,G,K 2 1 
C,H,L 3 1 
D,I,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 66 A SER 64 1_555 E C8 CAZ . A CAZ 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale2 B OG SER 66 B SER 64 1_555 G C8 CAZ . B CAZ 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale3 C OG SER 66 C SER 64 1_555 H C8 CAZ . C CAZ 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale4 D OG SER 66 D SER 64 1_555 I C8 CAZ . D CAZ 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 158 n n 
N H GLY sing 159 n n 
N H2 GLY sing 160 n n 
CA C GLY sing 161 n n 
CA HA2 GLY sing 162 n n 
CA HA3 GLY sing 163 n n 
C O GLY doub 164 n n 
C OXT GLY sing 165 n n 
OXT HXT GLY sing 166 n n 
#
_atom_sites.entry_id                     6PWM 
_atom_sites.fract_transf_matrix[1][1]    0.010839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004514 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CAZ A 1 401 1 CAZ CAZ . 
F 3 GLY A 1 402 1 GLY GLY . 
G 2 CAZ B 1 401 2 CAZ CAZ . 
H 2 CAZ C 1 401 3 CAZ CAZ . 
I 2 CAZ D 1 401 4 CAZ CAZ . 
J 4 HOH A 1 501 109 HOH HOH . 
J 4 HOH A 2 502 77 HOH HOH . 
J 4 HOH A 3 503 75 HOH HOH . 
J 4 HOH A 4 504 160 HOH HOH . 
J 4 HOH A 5 505 5 HOH HOH . 
J 4 HOH A 6 506 21 HOH HOH . 
J 4 HOH A 7 507 42 HOH HOH . 
J 4 HOH A 8 508 118 HOH HOH . 
J 4 HOH A 9 509 74 HOH HOH . 
J 4 HOH A 10 510 105 HOH HOH . 
J 4 HOH A 11 511 127 HOH HOH . 
J 4 HOH A 12 512 159 HOH HOH . 
J 4 HOH A 13 513 13 HOH HOH . 
J 4 HOH A 14 514 7 HOH HOH . 
J 4 HOH A 15 515 117 HOH HOH . 
J 4 HOH A 16 516 140 HOH HOH . 
J 4 HOH A 17 517 73 HOH HOH . 
J 4 HOH A 18 518 31 HOH HOH . 
J 4 HOH A 19 519 133 HOH HOH . 
J 4 HOH A 20 520 12 HOH HOH . 
J 4 HOH A 21 521 35 HOH HOH . 
J 4 HOH A 22 522 43 HOH HOH . 
J 4 HOH A 23 523 19 HOH HOH . 
J 4 HOH A 24 524 72 HOH HOH . 
J 4 HOH A 25 525 20 HOH HOH . 
J 4 HOH A 26 526 24 HOH HOH . 
J 4 HOH A 27 527 76 HOH HOH . 
J 4 HOH A 28 528 51 HOH HOH . 
J 4 HOH A 29 529 100 HOH HOH . 
J 4 HOH A 30 530 121 HOH HOH . 
J 4 HOH A 31 531 69 HOH HOH . 
J 4 HOH A 32 532 70 HOH HOH . 
J 4 HOH A 33 533 141 HOH HOH . 
J 4 HOH A 34 534 139 HOH HOH . 
J 4 HOH A 35 535 138 HOH HOH . 
K 4 HOH B 1 501 119 HOH HOH . 
K 4 HOH B 2 502 63 HOH HOH . 
K 4 HOH B 3 503 33 HOH HOH . 
K 4 HOH B 4 504 34 HOH HOH . 
K 4 HOH B 5 505 41 HOH HOH . 
K 4 HOH B 6 506 101 HOH HOH . 
K 4 HOH B 7 507 59 HOH HOH . 
K 4 HOH B 8 508 6 HOH HOH . 
K 4 HOH B 9 509 14 HOH HOH . 
K 4 HOH B 10 510 17 HOH HOH . 
K 4 HOH B 11 511 120 HOH HOH . 
K 4 HOH B 12 512 47 HOH HOH . 
K 4 HOH B 13 513 68 HOH HOH . 
K 4 HOH B 14 514 168 HOH HOH . 
K 4 HOH B 15 515 62 HOH HOH . 
K 4 HOH B 16 516 1 HOH HOH . 
K 4 HOH B 17 517 10 HOH HOH . 
K 4 HOH B 18 518 132 HOH HOH . 
K 4 HOH B 19 519 32 HOH HOH . 
K 4 HOH B 20 520 135 HOH HOH . 
K 4 HOH B 21 521 2 HOH HOH . 
K 4 HOH B 22 522 169 HOH HOH . 
K 4 HOH B 23 523 23 HOH HOH . 
K 4 HOH B 24 524 11 HOH HOH . 
K 4 HOH B 25 525 164 HOH HOH . 
K 4 HOH B 26 526 37 HOH HOH . 
K 4 HOH B 27 527 103 HOH HOH . 
K 4 HOH B 28 528 67 HOH HOH . 
K 4 HOH B 29 529 116 HOH HOH . 
K 4 HOH B 30 530 3 HOH HOH . 
K 4 HOH B 31 531 45 HOH HOH . 
K 4 HOH B 32 532 50 HOH HOH . 
K 4 HOH B 33 533 40 HOH HOH . 
K 4 HOH B 34 534 16 HOH HOH . 
K 4 HOH B 35 535 46 HOH HOH . 
K 4 HOH B 36 536 29 HOH HOH . 
K 4 HOH B 37 537 18 HOH HOH . 
K 4 HOH B 38 538 8 HOH HOH . 
K 4 HOH B 39 539 48 HOH HOH . 
K 4 HOH B 40 540 108 HOH HOH . 
K 4 HOH B 41 541 99 HOH HOH . 
K 4 HOH B 42 542 114 HOH HOH . 
K 4 HOH B 43 543 122 HOH HOH . 
K 4 HOH B 44 544 137 HOH HOH . 
K 4 HOH B 45 545 66 HOH HOH . 
K 4 HOH B 46 546 65 HOH HOH . 
K 4 HOH B 47 547 104 HOH HOH . 
K 4 HOH B 48 548 58 HOH HOH . 
K 4 HOH B 49 549 54 HOH HOH . 
K 4 HOH B 50 550 97 HOH HOH . 
K 4 HOH B 51 551 115 HOH HOH . 
K 4 HOH B 52 552 61 HOH HOH . 
K 4 HOH B 53 553 102 HOH HOH . 
K 4 HOH B 54 554 136 HOH HOH . 
K 4 HOH B 55 555 64 HOH HOH . 
K 4 HOH B 56 556 167 HOH HOH . 
L 4 HOH C 1 501 148 HOH HOH . 
L 4 HOH C 2 502 111 HOH HOH . 
L 4 HOH C 3 503 166 HOH HOH . 
L 4 HOH C 4 504 89 HOH HOH . 
L 4 HOH C 5 505 15 HOH HOH . 
L 4 HOH C 6 506 145 HOH HOH . 
L 4 HOH C 7 507 81 HOH HOH . 
L 4 HOH C 8 508 91 HOH HOH . 
L 4 HOH C 9 509 143 HOH HOH . 
L 4 HOH C 10 510 144 HOH HOH . 
L 4 HOH C 11 511 38 HOH HOH . 
L 4 HOH C 12 512 84 HOH HOH . 
L 4 HOH C 13 513 163 HOH HOH . 
L 4 HOH C 14 514 112 HOH HOH . 
L 4 HOH C 15 515 4 HOH HOH . 
L 4 HOH C 16 516 83 HOH HOH . 
L 4 HOH C 17 517 82 HOH HOH . 
L 4 HOH C 18 518 90 HOH HOH . 
L 4 HOH C 19 519 85 HOH HOH . 
L 4 HOH C 20 520 57 HOH HOH . 
L 4 HOH C 21 521 56 HOH HOH . 
L 4 HOH C 22 522 55 HOH HOH . 
L 4 HOH C 23 523 86 HOH HOH . 
L 4 HOH C 24 524 124 HOH HOH . 
L 4 HOH C 25 525 162 HOH HOH . 
L 4 HOH C 26 526 87 HOH HOH . 
L 4 HOH C 27 527 151 HOH HOH . 
L 4 HOH C 28 528 49 HOH HOH . 
L 4 HOH C 29 529 153 HOH HOH . 
L 4 HOH C 30 530 149 HOH HOH . 
L 4 HOH C 31 531 152 HOH HOH . 
L 4 HOH C 32 532 154 HOH HOH . 
L 4 HOH C 33 533 147 HOH HOH . 
L 4 HOH C 34 534 88 HOH HOH . 
L 4 HOH C 35 535 165 HOH HOH . 
L 4 HOH C 36 536 110 HOH HOH . 
L 4 HOH C 37 537 146 HOH HOH . 
L 4 HOH C 38 538 71 HOH HOH . 
L 4 HOH C 39 539 150 HOH HOH . 
L 4 HOH C 40 540 80 HOH HOH . 
M 4 HOH D 1 501 156 HOH HOH . 
M 4 HOH D 2 502 113 HOH HOH . 
M 4 HOH D 3 503 142 HOH HOH . 
M 4 HOH D 4 504 158 HOH HOH . 
M 4 HOH D 5 505 79 HOH HOH . 
M 4 HOH D 6 506 106 HOH HOH . 
M 4 HOH D 7 507 98 HOH HOH . 
M 4 HOH D 8 508 93 HOH HOH . 
M 4 HOH D 9 509 9 HOH HOH . 
M 4 HOH D 10 510 30 HOH HOH . 
M 4 HOH D 11 511 92 HOH HOH . 
M 4 HOH D 12 512 25 HOH HOH . 
M 4 HOH D 13 513 44 HOH HOH . 
M 4 HOH D 14 514 107 HOH HOH . 
M 4 HOH D 15 515 39 HOH HOH . 
M 4 HOH D 16 516 126 HOH HOH . 
M 4 HOH D 17 517 22 HOH HOH . 
M 4 HOH D 18 518 27 HOH HOH . 
M 4 HOH D 19 519 129 HOH HOH . 
M 4 HOH D 20 520 130 HOH HOH . 
M 4 HOH D 21 521 28 HOH HOH . 
M 4 HOH D 22 522 123 HOH HOH . 
M 4 HOH D 23 523 26 HOH HOH . 
M 4 HOH D 24 524 125 HOH HOH . 
M 4 HOH D 25 525 52 HOH HOH . 
M 4 HOH D 26 526 36 HOH HOH . 
M 4 HOH D 27 527 131 HOH HOH . 
M 4 HOH D 28 528 60 HOH HOH . 
M 4 HOH D 29 529 155 HOH HOH . 
M 4 HOH D 30 530 53 HOH HOH . 
M 4 HOH D 31 531 134 HOH HOH . 
M 4 HOH D 32 532 78 HOH HOH . 
M 4 HOH D 33 533 128 HOH HOH . 
M 4 HOH D 34 534 94 HOH HOH . 
M 4 HOH D 35 535 157 HOH HOH . 
M 4 HOH D 36 536 161 HOH HOH . 
M 4 HOH D 37 537 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . F 3 74.359 20.123 24.765 1 65.36 ? N GLY 402 A 1 
HETATM 2 C CA GLY . . . F 3 74.306 19.158 25.908 1 63.28 ? CA GLY 402 A 1 
HETATM 3 C C GLY . . . F 3 74.562 17.729 25.459 1 65.63 ? C GLY 402 A 1 
HETATM 4 O O GLY . . . F 3 74.969 17.479 24.321 1 64.13 ? O GLY 402 A 1 
HETATM 5 O OXT GLY . . . F 3 74.373 16.775 26.215 1 66.46 ? OXT GLY 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#