data_6PWQ # _model_server_result.job_id Yl_Hesh1vNuEPMxCN-uIyg _model_server_result.datetime_utc '2024-11-14 02:59:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":514}' # _entry.id 6PWQ # _exptl.entry_id 6PWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PWQ _cell.length_a 109.535 _cell.length_b 109.535 _cell.length_c 204.468 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,FA 1 1 B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,GA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 CA N N ? 5 DA N N ? 5 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 212 A ASP 241 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 A OE1 GLN 243 A GLN 272 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 A O LEU 279 A LEU 308 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc4 A OD1 ASN 281 A ASN 310 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A OD1 ASP 310 A ASP 339 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 A OD2 ASP 310 A ASP 339 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc7 C CA CA . A CA 501 1_555 FA O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 B OD1 ASP 212 B ASP 241 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 B OE1 GLN 243 B GLN 272 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc10 B O LEU 279 B LEU 308 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc11 B OD1 ASN 281 B ASN 310 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc12 B OD1 ASP 310 B ASP 339 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc13 B OD2 ASP 310 B ASP 339 1_555 Q CA CA . B CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc14 Q CA CA . B CA 501 1_555 GA O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6PWQ _atom_sites.fract_transf_matrix[1][1] 0.00913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 501 500 CA CA . D 3 SO4 A 1 502 600 SO4 SO4 . E 3 SO4 A 1 503 601 SO4 SO4 . F 3 SO4 A 1 504 602 SO4 SO4 . G 3 SO4 A 1 505 603 SO4 SO4 . H 3 SO4 A 1 506 604 SO4 SO4 . I 3 SO4 A 1 507 605 SO4 SO4 . J 3 SO4 A 1 508 606 SO4 SO4 . K 3 SO4 A 1 509 607 SO4 SO4 . L 3 SO4 A 1 510 608 SO4 SO4 . M 3 SO4 A 1 511 609 SO4 SO4 . N 4 PG4 A 1 512 700 PG4 PG4 . O 5 GOL A 1 513 800 GOL GOL . P 5 GOL A 1 514 801 GOL GOL . Q 2 CA B 1 501 500 CA CA . R 3 SO4 B 1 502 600 SO4 SO4 . S 3 SO4 B 1 503 601 SO4 SO4 . T 3 SO4 B 1 504 602 SO4 SO4 . U 3 SO4 B 1 505 603 SO4 SO4 . V 3 SO4 B 1 506 604 SO4 SO4 . W 3 SO4 B 1 507 605 SO4 SO4 . X 3 SO4 B 1 508 606 SO4 SO4 . Y 3 SO4 B 1 509 607 SO4 SO4 . Z 3 SO4 B 1 510 608 SO4 SO4 . AA 3 SO4 B 1 511 609 SO4 SO4 . BA 4 PG4 B 1 512 700 PG4 PG4 . CA 5 GOL B 1 513 800 GOL GOL . DA 5 GOL B 1 514 801 GOL GOL . EA 5 GOL B 1 515 802 GOL GOL . FA 6 HOH A 1 601 10 HOH HOH . FA 6 HOH A 2 602 48 HOH HOH . FA 6 HOH A 3 603 69 HOH HOH . FA 6 HOH A 4 604 178 HOH HOH . FA 6 HOH A 5 605 159 HOH HOH . FA 6 HOH A 6 606 133 HOH HOH . FA 6 HOH A 7 607 25 HOH HOH . FA 6 HOH A 8 608 75 HOH HOH . FA 6 HOH A 9 609 180 HOH HOH . FA 6 HOH A 10 610 46 HOH HOH . FA 6 HOH A 11 611 96 HOH HOH . FA 6 HOH A 12 612 171 HOH HOH . FA 6 HOH A 13 613 13 HOH HOH . FA 6 HOH A 14 614 51 HOH HOH . FA 6 HOH A 15 615 50 HOH HOH . FA 6 HOH A 16 616 97 HOH HOH . FA 6 HOH A 17 617 57 HOH HOH . FA 6 HOH A 18 618 3 HOH HOH . FA 6 HOH A 19 619 12 HOH HOH . FA 6 HOH A 20 620 27 HOH HOH . FA 6 HOH A 21 621 174 HOH HOH . FA 6 HOH A 22 622 109 HOH HOH . FA 6 HOH A 23 623 17 HOH HOH . FA 6 HOH A 24 624 137 HOH HOH . FA 6 HOH A 25 625 22 HOH HOH . FA 6 HOH A 26 626 103 HOH HOH . FA 6 HOH A 27 627 90 HOH HOH . FA 6 HOH A 28 628 94 HOH HOH . FA 6 HOH A 29 629 104 HOH HOH . FA 6 HOH A 30 630 24 HOH HOH . FA 6 HOH A 31 631 5 HOH HOH . FA 6 HOH A 32 632 29 HOH HOH . FA 6 HOH A 33 633 121 HOH HOH . FA 6 HOH A 34 634 138 HOH HOH . FA 6 HOH A 35 635 89 HOH HOH . FA 6 HOH A 36 636 26 HOH HOH . FA 6 HOH A 37 637 140 HOH HOH . FA 6 HOH A 38 638 34 HOH HOH . FA 6 HOH A 39 639 18 HOH HOH . FA 6 HOH A 40 640 31 HOH HOH . FA 6 HOH A 41 641 53 HOH HOH . FA 6 HOH A 42 642 107 HOH HOH . FA 6 HOH A 43 643 8 HOH HOH . FA 6 HOH A 44 644 77 HOH HOH . FA 6 HOH A 45 645 125 HOH HOH . FA 6 HOH A 46 646 128 HOH HOH . FA 6 HOH A 47 647 54 HOH HOH . FA 6 HOH A 48 648 20 HOH HOH . FA 6 HOH A 49 649 32 HOH HOH . FA 6 HOH A 50 650 116 HOH HOH . FA 6 HOH A 51 651 33 HOH HOH . FA 6 HOH A 52 652 73 HOH HOH . FA 6 HOH A 53 653 19 HOH HOH . FA 6 HOH A 54 654 47 HOH HOH . FA 6 HOH A 55 655 55 HOH HOH . FA 6 HOH A 56 656 72 HOH HOH . FA 6 HOH A 57 657 106 HOH HOH . FA 6 HOH A 58 658 142 HOH HOH . FA 6 HOH A 59 659 164 HOH HOH . FA 6 HOH A 60 660 21 HOH HOH . FA 6 HOH A 61 661 134 HOH HOH . FA 6 HOH A 62 662 115 HOH HOH . FA 6 HOH A 63 663 78 HOH HOH . FA 6 HOH A 64 664 141 HOH HOH . FA 6 HOH A 65 665 111 HOH HOH . FA 6 HOH A 66 666 147 HOH HOH . FA 6 HOH A 67 667 92 HOH HOH . FA 6 HOH A 68 668 62 HOH HOH . FA 6 HOH A 69 669 146 HOH HOH . FA 6 HOH A 70 670 56 HOH HOH . FA 6 HOH A 71 671 9 HOH HOH . FA 6 HOH A 72 672 11 HOH HOH . FA 6 HOH A 73 673 36 HOH HOH . FA 6 HOH A 74 674 136 HOH HOH . FA 6 HOH A 75 675 144 HOH HOH . FA 6 HOH A 76 676 105 HOH HOH . FA 6 HOH A 77 677 185 HOH HOH . FA 6 HOH A 78 678 163 HOH HOH . FA 6 HOH A 79 679 101 HOH HOH . FA 6 HOH A 80 680 23 HOH HOH . FA 6 HOH A 81 681 80 HOH HOH . FA 6 HOH A 82 682 161 HOH HOH . FA 6 HOH A 83 683 14 HOH HOH . FA 6 HOH A 84 684 139 HOH HOH . FA 6 HOH A 85 685 114 HOH HOH . FA 6 HOH A 86 686 76 HOH HOH . FA 6 HOH A 87 687 30 HOH HOH . FA 6 HOH A 88 688 124 HOH HOH . FA 6 HOH A 89 689 79 HOH HOH . FA 6 HOH A 90 690 71 HOH HOH . FA 6 HOH A 91 691 74 HOH HOH . FA 6 HOH A 92 692 176 HOH HOH . FA 6 HOH A 93 693 143 HOH HOH . FA 6 HOH A 94 694 4 HOH HOH . FA 6 HOH A 95 695 177 HOH HOH . FA 6 HOH A 96 696 64 HOH HOH . FA 6 HOH A 97 697 118 HOH HOH . FA 6 HOH A 98 698 184 HOH HOH . FA 6 HOH A 99 699 135 HOH HOH . FA 6 HOH A 100 700 168 HOH HOH . FA 6 HOH A 101 701 60 HOH HOH . FA 6 HOH A 102 702 132 HOH HOH . FA 6 HOH A 103 703 35 HOH HOH . FA 6 HOH A 104 704 70 HOH HOH . FA 6 HOH A 105 705 166 HOH HOH . FA 6 HOH A 106 706 182 HOH HOH . FA 6 HOH A 107 707 181 HOH HOH . FA 6 HOH A 108 708 131 HOH HOH . FA 6 HOH A 109 709 165 HOH HOH . FA 6 HOH A 110 710 172 HOH HOH . FA 6 HOH A 111 711 145 HOH HOH . GA 6 HOH B 1 601 93 HOH HOH . GA 6 HOH B 2 602 151 HOH HOH . GA 6 HOH B 3 603 187 HOH HOH . GA 6 HOH B 4 604 7 HOH HOH . GA 6 HOH B 5 605 66 HOH HOH . GA 6 HOH B 6 606 68 HOH HOH . GA 6 HOH B 7 607 1 HOH HOH . GA 6 HOH B 8 608 41 HOH HOH . GA 6 HOH B 9 609 98 HOH HOH . GA 6 HOH B 10 610 175 HOH HOH . GA 6 HOH B 11 611 85 HOH HOH . GA 6 HOH B 12 612 108 HOH HOH . GA 6 HOH B 13 613 123 HOH HOH . GA 6 HOH B 14 614 183 HOH HOH . GA 6 HOH B 15 615 117 HOH HOH . GA 6 HOH B 16 616 129 HOH HOH . GA 6 HOH B 17 617 40 HOH HOH . GA 6 HOH B 18 618 120 HOH HOH . GA 6 HOH B 19 619 37 HOH HOH . GA 6 HOH B 20 620 6 HOH HOH . GA 6 HOH B 21 621 2 HOH HOH . GA 6 HOH B 22 622 126 HOH HOH . GA 6 HOH B 23 623 110 HOH HOH . GA 6 HOH B 24 624 113 HOH HOH . GA 6 HOH B 25 625 99 HOH HOH . GA 6 HOH B 26 626 39 HOH HOH . GA 6 HOH B 27 627 65 HOH HOH . GA 6 HOH B 28 628 49 HOH HOH . GA 6 HOH B 29 629 81 HOH HOH . GA 6 HOH B 30 630 42 HOH HOH . GA 6 HOH B 31 631 153 HOH HOH . GA 6 HOH B 32 632 87 HOH HOH . GA 6 HOH B 33 633 88 HOH HOH . GA 6 HOH B 34 634 84 HOH HOH . GA 6 HOH B 35 635 173 HOH HOH . GA 6 HOH B 36 636 122 HOH HOH . GA 6 HOH B 37 637 67 HOH HOH . GA 6 HOH B 38 638 150 HOH HOH . GA 6 HOH B 39 639 112 HOH HOH . GA 6 HOH B 40 640 61 HOH HOH . GA 6 HOH B 41 641 95 HOH HOH . GA 6 HOH B 42 642 149 HOH HOH . GA 6 HOH B 43 643 119 HOH HOH . GA 6 HOH B 44 644 63 HOH HOH . GA 6 HOH B 45 645 59 HOH HOH . GA 6 HOH B 46 646 100 HOH HOH . GA 6 HOH B 47 647 83 HOH HOH . GA 6 HOH B 48 648 43 HOH HOH . GA 6 HOH B 49 649 38 HOH HOH . GA 6 HOH B 50 650 130 HOH HOH . GA 6 HOH B 51 651 45 HOH HOH . GA 6 HOH B 52 652 91 HOH HOH . GA 6 HOH B 53 653 52 HOH HOH . GA 6 HOH B 54 654 169 HOH HOH . GA 6 HOH B 55 655 152 HOH HOH . GA 6 HOH B 56 656 44 HOH HOH . GA 6 HOH B 57 657 127 HOH HOH . GA 6 HOH B 58 658 156 HOH HOH . GA 6 HOH B 59 659 102 HOH HOH . GA 6 HOH B 60 660 86 HOH HOH . GA 6 HOH B 61 661 28 HOH HOH . GA 6 HOH B 62 662 148 HOH HOH . GA 6 HOH B 63 663 162 HOH HOH . GA 6 HOH B 64 664 155 HOH HOH . GA 6 HOH B 65 665 154 HOH HOH . GA 6 HOH B 66 666 16 HOH HOH . GA 6 HOH B 67 667 82 HOH HOH . GA 6 HOH B 68 668 179 HOH HOH . GA 6 HOH B 69 669 15 HOH HOH . GA 6 HOH B 70 670 58 HOH HOH . GA 6 HOH B 71 671 186 HOH HOH . GA 6 HOH B 72 672 157 HOH HOH . GA 6 HOH B 73 673 160 HOH HOH . GA 6 HOH B 74 674 167 HOH HOH . GA 6 HOH B 75 675 170 HOH HOH . GA 6 HOH B 76 676 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . DA 5 46.871 -22.093 42.761 1 62.13 ? C1 GOL 514 B 1 HETATM 2 O O1 GOL . . . DA 5 48.046 -22.877 42.791 1 56.34 ? O1 GOL 514 B 1 HETATM 3 C C2 GOL . . . DA 5 47.178 -20.594 42.824 1 60.61 ? C2 GOL 514 B 1 HETATM 4 O O2 GOL . . . DA 5 46.967 -20.125 44.137 1 65.57 ? O2 GOL 514 B 1 HETATM 5 C C3 GOL . . . DA 5 48.605 -20.269 42.389 1 55.51 ? C3 GOL 514 B 1 HETATM 6 O O3 GOL . . . DA 5 49.536 -20.85 43.281 1 60.47 ? O3 GOL 514 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #