data_6PX2 # _model_server_result.job_id Aq-8e-xx9FZIYxivWvPs3Q _model_server_result.datetime_utc '2024-11-04 22:31:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6px2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":402}' # _entry.id 6PX2 # _exptl.entry_id 6PX2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.68 _cell.angle_beta 77.7 _cell.angle_gamma 67.98 _cell.entry_id 6PX2 _cell.length_a 78.219 _cell.length_b 79.117 _cell.length_c 138.819 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PX2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 335 n n P O2 PO4 sing 336 n n P O3 PO4 sing 337 n n P O4 PO4 sing 338 n n # _atom_sites.entry_id 6PX2 _atom_sites.fract_transf_matrix[1][1] 0.012785 _atom_sites.fract_transf_matrix[1][2] -0.005171 _atom_sites.fract_transf_matrix[1][3] -0.001956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013634 _atom_sites.fract_transf_matrix[2][3] -0.002297 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 401 401 NAD NAD . J 3 PO4 A 1 402 402 PO4 PO4 . K 2 NAD B 1 401 401 NAD NAD . L 3 PO4 B 1 402 402 PO4 PO4 . M 2 NAD C 1 401 401 NAD NAD . N 3 PO4 C 1 402 402 PO4 PO4 . O 2 NAD D 1 401 401 NAD NAD . P 3 PO4 D 1 402 402 PO4 PO4 . Q 2 NAD E 1 401 401 NAD NAD . R 3 PO4 E 1 402 402 PO4 PO4 . S 2 NAD F 1 401 401 NAD NAD . T 3 PO4 F 1 402 402 PO4 PO4 . U 2 NAD G 1 401 401 NAD NAD . V 3 PO4 G 1 402 402 PO4 PO4 . W 2 NAD H 1 401 401 NAD NAD . X 3 PO4 H 1 402 402 PO4 PO4 . Y 4 HOH A 1 501 183 HOH HOH . Y 4 HOH A 2 502 178 HOH HOH . Y 4 HOH A 3 503 160 HOH HOH . Y 4 HOH A 4 504 3 HOH HOH . Y 4 HOH A 5 505 212 HOH HOH . Y 4 HOH A 6 506 191 HOH HOH . Y 4 HOH A 7 507 164 HOH HOH . Y 4 HOH A 8 508 159 HOH HOH . Y 4 HOH A 9 509 222 HOH HOH . Y 4 HOH A 10 510 1 HOH HOH . Y 4 HOH A 11 511 7 HOH HOH . Y 4 HOH A 12 512 4 HOH HOH . Y 4 HOH A 13 513 2 HOH HOH . Y 4 HOH A 14 514 11 HOH HOH . Y 4 HOH A 15 515 5 HOH HOH . Y 4 HOH A 16 516 155 HOH HOH . Y 4 HOH A 17 517 6 HOH HOH . Y 4 HOH A 18 518 9 HOH HOH . Y 4 HOH A 19 519 10 HOH HOH . Y 4 HOH A 20 520 13 HOH HOH . Y 4 HOH A 21 521 8 HOH HOH . Y 4 HOH A 22 522 163 HOH HOH . Y 4 HOH A 23 523 14 HOH HOH . Z 4 HOH B 1 501 202 HOH HOH . Z 4 HOH B 2 502 175 HOH HOH . Z 4 HOH B 3 503 166 HOH HOH . Z 4 HOH B 4 504 218 HOH HOH . Z 4 HOH B 5 505 171 HOH HOH . Z 4 HOH B 6 506 144 HOH HOH . Z 4 HOH B 7 507 147 HOH HOH . Z 4 HOH B 8 508 174 HOH HOH . Z 4 HOH B 9 509 126 HOH HOH . Z 4 HOH B 10 510 133 HOH HOH . Z 4 HOH B 11 511 208 HOH HOH . Z 4 HOH B 12 512 25 HOH HOH . Z 4 HOH B 13 513 130 HOH HOH . Z 4 HOH B 14 514 196 HOH HOH . Z 4 HOH B 15 515 180 HOH HOH . AA 4 HOH C 1 501 152 HOH HOH . AA 4 HOH C 2 502 207 HOH HOH . AA 4 HOH C 3 503 215 HOH HOH . AA 4 HOH C 4 504 203 HOH HOH . AA 4 HOH C 5 505 137 HOH HOH . AA 4 HOH C 6 506 190 HOH HOH . AA 4 HOH C 7 507 15 HOH HOH . AA 4 HOH C 8 508 217 HOH HOH . AA 4 HOH C 9 509 170 HOH HOH . AA 4 HOH C 10 510 153 HOH HOH . AA 4 HOH C 11 511 19 HOH HOH . AA 4 HOH C 12 512 124 HOH HOH . AA 4 HOH C 13 513 205 HOH HOH . AA 4 HOH C 14 514 18 HOH HOH . AA 4 HOH C 15 515 157 HOH HOH . AA 4 HOH C 16 516 20 HOH HOH . AA 4 HOH C 17 517 16 HOH HOH . AA 4 HOH C 18 518 17 HOH HOH . AA 4 HOH C 19 519 169 HOH HOH . AA 4 HOH C 20 520 12 HOH HOH . AA 4 HOH C 21 521 21 HOH HOH . AA 4 HOH C 22 522 204 HOH HOH . AA 4 HOH C 23 523 200 HOH HOH . AA 4 HOH C 24 524 214 HOH HOH . AA 4 HOH C 25 525 22 HOH HOH . AA 4 HOH C 26 526 223 HOH HOH . AA 4 HOH C 27 527 148 HOH HOH . AA 4 HOH C 28 528 24 HOH HOH . AA 4 HOH C 29 529 26 HOH HOH . AA 4 HOH C 30 530 23 HOH HOH . AA 4 HOH C 31 531 224 HOH HOH . AA 4 HOH C 32 532 27 HOH HOH . AA 4 HOH C 33 533 187 HOH HOH . AA 4 HOH C 34 534 28 HOH HOH . AA 4 HOH C 35 535 29 HOH HOH . BA 4 HOH D 1 501 33 HOH HOH . BA 4 HOH D 2 502 136 HOH HOH . BA 4 HOH D 3 503 179 HOH HOH . BA 4 HOH D 4 504 32 HOH HOH . BA 4 HOH D 5 505 139 HOH HOH . BA 4 HOH D 6 506 151 HOH HOH . BA 4 HOH D 7 507 198 HOH HOH . BA 4 HOH D 8 508 176 HOH HOH . BA 4 HOH D 9 509 162 HOH HOH . BA 4 HOH D 10 510 132 HOH HOH . BA 4 HOH D 11 511 134 HOH HOH . BA 4 HOH D 12 512 31 HOH HOH . BA 4 HOH D 13 513 36 HOH HOH . BA 4 HOH D 14 514 30 HOH HOH . BA 4 HOH D 15 515 192 HOH HOH . BA 4 HOH D 16 516 34 HOH HOH . BA 4 HOH D 17 517 173 HOH HOH . BA 4 HOH D 18 518 39 HOH HOH . BA 4 HOH D 19 519 43 HOH HOH . BA 4 HOH D 20 520 138 HOH HOH . BA 4 HOH D 21 521 40 HOH HOH . BA 4 HOH D 22 522 35 HOH HOH . BA 4 HOH D 23 523 37 HOH HOH . BA 4 HOH D 24 524 44 HOH HOH . BA 4 HOH D 25 525 41 HOH HOH . BA 4 HOH D 26 526 38 HOH HOH . BA 4 HOH D 27 527 42 HOH HOH . BA 4 HOH D 28 528 45 HOH HOH . BA 4 HOH D 29 529 194 HOH HOH . BA 4 HOH D 30 530 46 HOH HOH . BA 4 HOH D 31 531 47 HOH HOH . BA 4 HOH D 32 532 129 HOH HOH . BA 4 HOH D 33 533 48 HOH HOH . BA 4 HOH D 34 534 49 HOH HOH . CA 4 HOH E 1 501 193 HOH HOH . CA 4 HOH E 2 502 154 HOH HOH . CA 4 HOH E 3 503 158 HOH HOH . CA 4 HOH E 4 504 213 HOH HOH . CA 4 HOH E 5 505 195 HOH HOH . CA 4 HOH E 6 506 143 HOH HOH . CA 4 HOH E 7 507 56 HOH HOH . CA 4 HOH E 8 508 197 HOH HOH . CA 4 HOH E 9 509 201 HOH HOH . CA 4 HOH E 10 510 50 HOH HOH . CA 4 HOH E 11 511 55 HOH HOH . CA 4 HOH E 12 512 51 HOH HOH . CA 4 HOH E 13 513 53 HOH HOH . CA 4 HOH E 14 514 57 HOH HOH . CA 4 HOH E 15 515 61 HOH HOH . CA 4 HOH E 16 516 54 HOH HOH . CA 4 HOH E 17 517 59 HOH HOH . CA 4 HOH E 18 518 188 HOH HOH . CA 4 HOH E 19 519 165 HOH HOH . CA 4 HOH E 20 520 58 HOH HOH . CA 4 HOH E 21 521 52 HOH HOH . CA 4 HOH E 22 522 60 HOH HOH . CA 4 HOH E 23 523 63 HOH HOH . CA 4 HOH E 24 524 64 HOH HOH . CA 4 HOH E 25 525 66 HOH HOH . CA 4 HOH E 26 526 65 HOH HOH . CA 4 HOH E 27 527 62 HOH HOH . CA 4 HOH E 28 528 221 HOH HOH . CA 4 HOH E 29 529 67 HOH HOH . DA 4 HOH F 1 501 172 HOH HOH . DA 4 HOH F 2 502 156 HOH HOH . DA 4 HOH F 3 503 69 HOH HOH . DA 4 HOH F 4 504 68 HOH HOH . DA 4 HOH F 5 505 71 HOH HOH . DA 4 HOH F 6 506 72 HOH HOH . DA 4 HOH F 7 507 182 HOH HOH . DA 4 HOH F 8 508 75 HOH HOH . DA 4 HOH F 9 509 225 HOH HOH . DA 4 HOH F 10 510 127 HOH HOH . DA 4 HOH F 11 511 73 HOH HOH . DA 4 HOH F 12 512 74 HOH HOH . DA 4 HOH F 13 513 89 HOH HOH . DA 4 HOH F 14 514 150 HOH HOH . DA 4 HOH F 15 515 77 HOH HOH . DA 4 HOH F 16 516 76 HOH HOH . DA 4 HOH F 17 517 70 HOH HOH . DA 4 HOH F 18 518 78 HOH HOH . DA 4 HOH F 19 519 79 HOH HOH . EA 4 HOH G 1 501 81 HOH HOH . EA 4 HOH G 2 502 161 HOH HOH . EA 4 HOH G 3 503 206 HOH HOH . EA 4 HOH G 4 504 210 HOH HOH . EA 4 HOH G 5 505 83 HOH HOH . EA 4 HOH G 6 506 135 HOH HOH . EA 4 HOH G 7 507 80 HOH HOH . EA 4 HOH G 8 508 86 HOH HOH . EA 4 HOH G 9 509 184 HOH HOH . EA 4 HOH G 10 510 82 HOH HOH . EA 4 HOH G 11 511 88 HOH HOH . EA 4 HOH G 12 512 84 HOH HOH . EA 4 HOH G 13 513 87 HOH HOH . EA 4 HOH G 14 514 177 HOH HOH . EA 4 HOH G 15 515 85 HOH HOH . EA 4 HOH G 16 516 189 HOH HOH . EA 4 HOH G 17 517 199 HOH HOH . EA 4 HOH G 18 518 181 HOH HOH . EA 4 HOH G 19 519 90 HOH HOH . EA 4 HOH G 20 520 186 HOH HOH . FA 4 HOH H 1 501 142 HOH HOH . FA 4 HOH H 2 502 145 HOH HOH . FA 4 HOH H 3 503 146 HOH HOH . FA 4 HOH H 4 504 91 HOH HOH . FA 4 HOH H 5 505 141 HOH HOH . FA 4 HOH H 6 506 220 HOH HOH . FA 4 HOH H 7 507 94 HOH HOH . FA 4 HOH H 8 508 93 HOH HOH . FA 4 HOH H 9 509 149 HOH HOH . FA 4 HOH H 10 510 92 HOH HOH . FA 4 HOH H 11 511 114 HOH HOH . FA 4 HOH H 12 512 128 HOH HOH . FA 4 HOH H 13 513 97 HOH HOH . FA 4 HOH H 14 514 99 HOH HOH . FA 4 HOH H 15 515 95 HOH HOH . FA 4 HOH H 16 516 101 HOH HOH . FA 4 HOH H 17 517 103 HOH HOH . FA 4 HOH H 18 518 168 HOH HOH . FA 4 HOH H 19 519 104 HOH HOH . FA 4 HOH H 20 520 109 HOH HOH . FA 4 HOH H 21 521 131 HOH HOH . FA 4 HOH H 22 522 105 HOH HOH . FA 4 HOH H 23 523 108 HOH HOH . FA 4 HOH H 24 524 98 HOH HOH . FA 4 HOH H 25 525 116 HOH HOH . FA 4 HOH H 26 526 107 HOH HOH . FA 4 HOH H 27 527 106 HOH HOH . FA 4 HOH H 28 528 111 HOH HOH . FA 4 HOH H 29 529 96 HOH HOH . FA 4 HOH H 30 530 113 HOH HOH . FA 4 HOH H 31 531 112 HOH HOH . FA 4 HOH H 32 532 125 HOH HOH . FA 4 HOH H 33 533 140 HOH HOH . FA 4 HOH H 34 534 102 HOH HOH . FA 4 HOH H 35 535 185 HOH HOH . FA 4 HOH H 36 536 100 HOH HOH . FA 4 HOH H 37 537 110 HOH HOH . FA 4 HOH H 38 538 117 HOH HOH . FA 4 HOH H 39 539 118 HOH HOH . FA 4 HOH H 40 540 120 HOH HOH . FA 4 HOH H 41 541 119 HOH HOH . FA 4 HOH H 42 542 115 HOH HOH . FA 4 HOH H 43 543 219 HOH HOH . FA 4 HOH H 44 544 209 HOH HOH . FA 4 HOH H 45 545 121 HOH HOH . FA 4 HOH H 46 546 122 HOH HOH . FA 4 HOH H 47 547 123 HOH HOH . FA 4 HOH H 48 548 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . N 3 -30.325 116.001 -0.489 1 69.33 ? P PO4 402 C 1 HETATM 2 O O1 PO4 . . . N 3 -30.796 116.3 -1.901 1 65.44 ? O1 PO4 402 C 1 HETATM 3 O O2 PO4 . . . N 3 -30.432 114.517 -0.294 1 61.65 ? O2 PO4 402 C 1 HETATM 4 O O3 PO4 . . . N 3 -31.201 116.652 0.562 1 56.75 ? O3 PO4 402 C 1 HETATM 5 O O4 PO4 . . . N 3 -28.899 116.494 -0.344 1 62.64 ? O4 PO4 402 C 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #