data_6PX5 # _model_server_result.job_id a7ATmJCux4bbtkCKdvOJxw _model_server_result.datetime_utc '2024-10-11 03:16:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6px5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6PX5 # _exptl.entry_id 6PX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6PX5 _cell.length_a 100.134 _cell.length_b 100.134 _cell.length_c 118.679 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG B 901 NAG 3 n C NAG 2 A 2 NAG B 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 X CYS 170 1_555 A SG CYS 80 X CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 23 X CYS 191 1_555 A SG CYS 63 X CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 51 X CYS 219 1_555 A SG CYS 75 X CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf4 A SG CYS 125 X CYS 293 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf6 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 B NE2 HIS 43 B HIS 57 1_555 F C3 0G6 . B 0G6 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 B ND2 ASN 53 B ASN 60 1_555 C C1 NAG . A NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? metalc ? metalc1 A NE2 HIS 19 X HIS 187 1_555 E ZN ZN . X ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc2 A NE2 HIS 19 X HIS 187 1_555 E ZN ZN . X ZN 402 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc3 A OE1 GLU 58 X GLU 226 1_555 D ZN ZN . X ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A OE1 GLU 86 X GLU 254 1_555 D ZN ZN . X ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 D ZN ZN . X ZN 401 1_555 H O HOH . X HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc6 D ZN ZN . X ZN 401 1_555 B OD2 ASP 183 B ASP 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc7 E ZN ZN . X ZN 402 1_555 B OE2 GLU 94 B GLU 97 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 E ZN ZN . X ZN 402 6_555 B OE2 GLU 94 B GLU 97 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc9 E ZN ZN . X ZN 402 1_555 I O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 E ZN ZN . X ZN 402 1_555 I O HOH . B HOH 901 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc11 B O TYR 190 B TYR 184 1_555 G NA NA . B NA 802 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 B O ARG 233 B ARG 221 1_555 G NA NA . B NA 802 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc13 B O LYS 236 B LYS 224 1_555 G NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc14 G NA NA . B NA 802 1_555 I O HOH . B HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc15 G NA NA . B NA 802 1_555 I O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc16 G NA NA . B NA 802 1_555 I O HOH . B HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PX5 _atom_sites.fract_transf_matrix[1][1] 0.009987 _atom_sites.fract_transf_matrix[1][2] 0.005766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN X 1 401 804 ZN ZN . E 4 ZN X 1 402 803 ZN ZN . F 5 0G6 B 1 801 801 0G6 0G6 . G 6 NA B 1 802 802 NA NA . H 7 HOH X 1 501 6 HOH HOH . H 7 HOH X 2 502 26 HOH HOH . H 7 HOH X 3 503 14 HOH HOH . H 7 HOH X 4 504 13 HOH HOH . H 7 HOH X 5 505 45 HOH HOH . H 7 HOH X 6 506 51 HOH HOH . H 7 HOH X 7 507 42 HOH HOH . H 7 HOH X 8 508 50 HOH HOH . H 7 HOH X 9 509 37 HOH HOH . H 7 HOH X 10 510 38 HOH HOH . H 7 HOH X 11 511 8 HOH HOH . H 7 HOH X 12 512 27 HOH HOH . H 7 HOH X 13 513 7 HOH HOH . H 7 HOH X 14 514 17 HOH HOH . H 7 HOH X 15 515 25 HOH HOH . H 7 HOH X 16 516 18 HOH HOH . H 7 HOH X 17 517 15 HOH HOH . H 7 HOH X 18 518 12 HOH HOH . H 7 HOH X 19 519 11 HOH HOH . H 7 HOH X 20 520 48 HOH HOH . H 7 HOH X 21 521 36 HOH HOH . H 7 HOH X 22 522 43 HOH HOH . H 7 HOH X 23 523 30 HOH HOH . H 7 HOH X 24 524 47 HOH HOH . H 7 HOH X 25 525 19 HOH HOH . H 7 HOH X 26 526 52 HOH HOH . H 7 HOH X 27 527 35 HOH HOH . I 7 HOH B 1 901 33 HOH HOH . I 7 HOH B 2 902 3 HOH HOH . I 7 HOH B 3 903 41 HOH HOH . I 7 HOH B 4 904 23 HOH HOH . I 7 HOH B 5 905 21 HOH HOH . I 7 HOH B 6 906 49 HOH HOH . I 7 HOH B 7 907 20 HOH HOH . I 7 HOH B 8 908 5 HOH HOH . I 7 HOH B 9 909 53 HOH HOH . I 7 HOH B 10 910 9 HOH HOH . I 7 HOH B 11 911 1 HOH HOH . I 7 HOH B 12 912 2 HOH HOH . I 7 HOH B 13 913 10 HOH HOH . I 7 HOH B 14 914 4 HOH HOH . I 7 HOH B 15 915 39 HOH HOH . I 7 HOH B 16 916 32 HOH HOH . I 7 HOH B 17 917 22 HOH HOH . I 7 HOH B 18 918 44 HOH HOH . I 7 HOH B 19 919 34 HOH HOH . I 7 HOH B 20 920 29 HOH HOH . I 7 HOH B 21 921 40 HOH HOH . I 7 HOH B 22 922 31 HOH HOH . I 7 HOH B 23 923 16 HOH HOH . I 7 HOH B 24 924 28 HOH HOH . I 7 HOH B 25 925 24 HOH HOH . I 7 HOH B 26 926 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 38.062 _atom_site.Cartn_y -34.4 _atom_site.Cartn_z 41.303 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id X _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #