data_6PXS
#
_model_server_result.job_id            ns1ga5JTzouiryKpSaIBHQ 
_model_server_result.datetime_utc      '2025-03-13 17:55:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pxs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    6PXS 
#
_exptl.entry_id    6PXS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PXS 
_cell.length_a            113.457 
_cell.length_b            113.457 
_cell.length_c            266.119 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PXS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6PXS 
_atom_sites.fract_transf_matrix[1][1]    0.008814 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008814 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003758 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 401 401 FAD FAD . 
F 2 FAD B 1 401 401 FAD FAD . 
G 2 FAD C 1 401 401 FAD FAD . 
H 2 FAD D 1 401 401 FAD FAD . 
I 3 HOH A 1 501 3 HOH HOH . 
I 3 HOH A 2 502 1 HOH HOH . 
I 3 HOH A 3 503 2 HOH HOH . 
I 3 HOH A 4 504 16 HOH HOH . 
I 3 HOH A 5 505 29 HOH HOH . 
I 3 HOH A 6 506 10 HOH HOH . 
J 3 HOH B 1 501 17 HOH HOH . 
J 3 HOH B 2 502 20 HOH HOH . 
J 3 HOH B 3 503 26 HOH HOH . 
J 3 HOH B 4 504 18 HOH HOH . 
J 3 HOH B 5 505 15 HOH HOH . 
J 3 HOH B 6 506 14 HOH HOH . 
J 3 HOH B 7 507 4 HOH HOH . 
J 3 HOH B 8 508 9 HOH HOH . 
J 3 HOH B 9 509 24 HOH HOH . 
J 3 HOH B 10 510 25 HOH HOH . 
J 3 HOH B 11 511 23 HOH HOH . 
K 3 HOH C 1 501 30 HOH HOH . 
K 3 HOH C 2 502 19 HOH HOH . 
K 3 HOH C 3 503 7 HOH HOH . 
K 3 HOH C 4 504 6 HOH HOH . 
K 3 HOH C 5 505 12 HOH HOH . 
K 3 HOH C 6 506 21 HOH HOH . 
L 3 HOH D 1 501 28 HOH HOH . 
L 3 HOH D 2 502 5 HOH HOH . 
L 3 HOH D 3 503 8 HOH HOH . 
L 3 HOH D 4 504 11 HOH HOH . 
L 3 HOH D 5 505 13 HOH HOH . 
L 3 HOH D 6 506 27 HOH HOH . 
L 3 HOH D 7 507 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 44.305 14.679 24.367 1 44.44 ? PA FAD 401 B 1 
HETATM 2 O O1A FAD . . . F 2 44.049 13.229 24.182 1 41.32 ? O1A FAD 401 B 1 
HETATM 3 O O2A FAD . . . F 2 45.752 15.028 24.734 1 39.49 ? O2A FAD 401 B 1 
HETATM 4 O O5B FAD . . . F 2 43.844 15.484 23.089 1 47.7 ? O5B FAD 401 B 1 
HETATM 5 C C5B FAD . . . F 2 44.53 16.682 22.667 1 48.17 ? C5B FAD 401 B 1 
HETATM 6 C C4B FAD . . . F 2 44.818 16.585 21.189 1 48.35 ? C4B FAD 401 B 1 
HETATM 7 O O4B FAD . . . F 2 44.844 17.912 20.612 1 50.26 ? O4B FAD 401 B 1 
HETATM 8 C C3B FAD . . . F 2 46.159 15.936 20.842 1 49.32 ? C3B FAD 401 B 1 
HETATM 9 O O3B FAD . . . F 2 46.024 15.042 19.744 1 52.42 ? O3B FAD 401 B 1 
HETATM 10 C C2B FAD . . . F 2 47.041 17.136 20.486 1 51.92 ? C2B FAD 401 B 1 
HETATM 11 O O2B FAD . . . F 2 48.072 16.8 19.565 1 51.07 ? O2B FAD 401 B 1 
HETATM 12 C C1B FAD . . . F 2 46.015 18.061 19.842 1 49.48 ? C1B FAD 401 B 1 
HETATM 13 N N9A FAD . . . F 2 46.403 19.468 19.841 1 57.86 ? N9A FAD 401 B 1 
HETATM 14 C C8A FAD . . . F 2 46.832 20.209 20.91 1 50.42 ? C8A FAD 401 B 1 
HETATM 15 N N7A FAD . . . F 2 47.125 21.453 20.611 1 54.56 ? N7A FAD 401 B 1 
HETATM 16 C C5A FAD . . . F 2 46.878 21.532 19.25 1 52.49 ? C5A FAD 401 B 1 
HETATM 17 C C6A FAD . . . F 2 46.994 22.584 18.323 1 52.54 ? C6A FAD 401 B 1 
HETATM 18 N N6A FAD . . . F 2 47.407 23.813 18.643 1 49.86 ? N6A FAD 401 B 1 
HETATM 19 N N1A FAD . . . F 2 46.667 22.327 17.037 1 53.88 ? N1A FAD 401 B 1 
HETATM 20 C C2A FAD . . . F 2 46.253 21.101 16.707 1 53.74 ? C2A FAD 401 B 1 
HETATM 21 N N3A FAD . . . F 2 46.104 20.034 17.495 1 49.5 ? N3A FAD 401 B 1 
HETATM 22 C C4A FAD . . . F 2 46.436 20.315 18.761 1 53.14 ? C4A FAD 401 B 1 
HETATM 23 N N1 FAD . . . F 2 40.913 8.284 32.216 1 58.58 ? N1 FAD 401 B 1 
HETATM 24 C C2 FAD . . . F 2 39.945 7.402 32.603 1 60.07 ? C2 FAD 401 B 1 
HETATM 25 O O2 FAD . . . F 2 38.754 7.729 32.654 1 60.83 ? O2 FAD 401 B 1 
HETATM 26 N N3 FAD . . . F 2 40.292 6.105 32.945 1 59.91 ? N3 FAD 401 B 1 
HETATM 27 C C4 FAD . . . F 2 41.571 5.582 32.94 1 57.93 ? C4 FAD 401 B 1 
HETATM 28 O O4 FAD . . . F 2 41.764 4.411 33.265 1 56.28 ? O4 FAD 401 B 1 
HETATM 29 C C4X FAD . . . F 2 42.592 6.527 32.531 1 54.81 ? C4X FAD 401 B 1 
HETATM 30 N N5 FAD . . . F 2 43.825 6.116 32.501 1 51.86 ? N5 FAD 401 B 1 
HETATM 31 C C5X FAD . . . F 2 44.802 7.015 32.108 1 48.05 ? C5X FAD 401 B 1 
HETATM 32 C C6 FAD . . . F 2 46.128 6.586 32.069 1 45.69 ? C6 FAD 401 B 1 
HETATM 33 C C7 FAD . . . F 2 47.149 7.448 31.683 1 40.79 ? C7 FAD 401 B 1 
HETATM 34 C C7M FAD . . . F 2 48.57 6.949 31.656 1 42.26 ? C7M FAD 401 B 1 
HETATM 35 C C8 FAD . . . F 2 46.842 8.77 31.327 1 44.92 ? C8 FAD 401 B 1 
HETATM 36 C C8M FAD . . . F 2 47.926 9.727 30.904 1 46.99 ? C8M FAD 401 B 1 
HETATM 37 C C9 FAD . . . F 2 45.519 9.199 31.364 1 49.17 ? C9 FAD 401 B 1 
HETATM 38 C C9A FAD . . . F 2 44.499 8.337 31.751 1 47.14 ? C9A FAD 401 B 1 
HETATM 39 N N10 FAD . . . F 2 43.148 8.741 31.796 1 46.24 ? N10 FAD 401 B 1 
HETATM 40 C C10 FAD . . . F 2 42.167 7.859 32.186 1 52.83 ? C10 FAD 401 B 1 
HETATM 41 C C1' FAD . . . F 2 42.76 10.118 31.443 1 49.82 ? C1' FAD 401 B 1 
HETATM 42 C C2' FAD . . . F 2 42.405 10.283 29.968 1 49.5 ? C2' FAD 401 B 1 
HETATM 43 O O2' FAD . . . F 2 43.285 9.504 29.157 1 49.42 ? O2' FAD 401 B 1 
HETATM 44 C C3' FAD . . . F 2 42.541 11.756 29.58 1 50.6 ? C3' FAD 401 B 1 
HETATM 45 O O3' FAD . . . F 2 42.056 12.563 30.648 1 47.11 ? O3' FAD 401 B 1 
HETATM 46 C C4' FAD . . . F 2 41.789 12.131 28.302 1 51.4 ? C4' FAD 401 B 1 
HETATM 47 O O4' FAD . . . F 2 42.051 11.141 27.306 1 51.21 ? O4' FAD 401 B 1 
HETATM 48 C C5' FAD . . . F 2 42.177 13.497 27.78 1 49.55 ? C5' FAD 401 B 1 
HETATM 49 O O5' FAD . . . F 2 41.758 13.612 26.403 1 45.75 ? O5' FAD 401 B 1 
HETATM 50 P P FAD . . . F 2 41.81 14.992 25.645 1 44.22 ? P FAD 401 B 1 
HETATM 51 O O1P FAD . . . F 2 41.225 14.84 24.237 1 41.37 ? O1P FAD 401 B 1 
HETATM 52 O O2P FAD . . . F 2 41.186 16.067 26.455 1 48.93 ? O2P FAD 401 B 1 
HETATM 53 O O3P FAD . . . F 2 43.37 15.251 25.513 1 45.81 ? O3P FAD 401 B 1 
HETATM 54 H H51A FAD . . . F 2 45.336 16.767 23.14 1 57.8 ? H51A FAD 401 B 1 
HETATM 55 H H52A FAD . . . F 2 43.988 17.431 22.834 1 57.8 ? H52A FAD 401 B 1 
HETATM 56 H H4B FAD . . . F 2 44.136 16.101 20.761 1 58.02 ? H4B FAD 401 B 1 
HETATM 57 H H3B FAD . . . F 2 46.503 15.495 21.596 1 59.18 ? H3B FAD 401 B 1 
HETATM 58 H HO3A FAD . . . F 2 46.768 14.719 19.56 1 62.9 ? HO3A FAD 401 B 1 
HETATM 59 H H2B FAD . . . F 2 47.408 17.522 21.259 1 62.3 ? H2B FAD 401 B 1 
HETATM 60 H HO2A FAD . . . F 2 48.216 17.448 19.064 1 61.28 ? HO2A FAD 401 B 1 
HETATM 61 H H1B FAD . . . F 2 45.847 17.791 18.958 1 59.38 ? H1B FAD 401 B 1 
HETATM 62 H H8A FAD . . . F 2 46.903 19.864 21.769 1 60.5 ? H8A FAD 401 B 1 
HETATM 63 H H61A FAD . . . F 2 47.833 23.948 19.387 1 59.84 ? H61A FAD 401 B 1 
HETATM 64 H H62A FAD . . . F 2 47.251 24.477 18.106 1 59.84 ? H62A FAD 401 B 1 
HETATM 65 H H2A FAD . . . F 2 46.04 20.973 15.812 1 64.49 ? H2A FAD 401 B 1 
HETATM 66 H HN3 FAD . . . F 2 39.649 5.574 33.185 1 71.89 ? HN3 FAD 401 B 1 
HETATM 67 H H6 FAD . . . F 2 46.181 5.696 32.329 1 54.82 ? H6 FAD 401 B 1 
HETATM 68 H HM71 FAD . . . F 2 48.921 7.051 30.791 1 50.72 ? HM71 FAD 401 B 1 
HETATM 69 H HM72 FAD . . . F 2 48.588 6.042 31.897 1 50.72 ? HM72 FAD 401 B 1 
HETATM 70 H HM73 FAD . . . F 2 49.087 7.444 32.264 1 50.72 ? HM73 FAD 401 B 1 
HETATM 71 H HM81 FAD . . . F 2 47.539 10.534 30.62 1 56.39 ? HM81 FAD 401 B 1 
HETATM 72 H HM82 FAD . . . F 2 48.418 9.35 30.197 1 56.39 ? HM82 FAD 401 B 1 
HETATM 73 H HM83 FAD . . . F 2 48.499 9.893 31.629 1 56.39 ? HM83 FAD 401 B 1 
HETATM 74 H H9 FAD . . . F 2 45.595 10.124 31.411 1 59.01 ? H9 FAD 401 B 1 
HETATM 75 H "H1'1" FAD . . . F 2 42.013 10.359 31.959 1 59.78 ? "H1'1" FAD 401 B 1 
HETATM 76 H "H1'2" FAD . . . F 2 43.477 10.69 31.644 1 59.78 ? "H1'2" FAD 401 B 1 
HETATM 77 H H2' FAD . . . F 2 41.52 10.002 29.828 1 59.41 ? H2' FAD 401 B 1 
HETATM 78 H HO2' FAD . . . F 2 44.033 9.867 29.131 1 59.3 ? HO2' FAD 401 B 1 
HETATM 79 H H3' FAD . . . F 2 43.452 11.946 29.458 1 60.72 ? H3' FAD 401 B 1 
HETATM 80 H HO3' FAD . . . F 2 41.365 12.224 30.964 1 56.53 ? HO3' FAD 401 B 1 
HETATM 81 H H4' FAD . . . F 2 40.869 12.135 28.491 1 61.67 ? H4' FAD 401 B 1 
HETATM 82 H HO4' FAD . . . F 2 42.814 11.256 26.996 1 61.45 ? HO4' FAD 401 B 1 
HETATM 83 H "H5'1" FAD . . . F 2 41.757 14.162 28.293 1 59.47 ? "H5'1" FAD 401 B 1 
HETATM 84 H "H5'2" FAD . . . F 2 43.109 13.602 27.834 1 59.47 ? "H5'2" FAD 401 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           84 
#