data_6PY0
#
_model_server_result.job_id            NAoxwjxxp1QDdhwptU1ebg 
_model_server_result.datetime_utc      '2024-12-26 21:34:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6py0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6PY0 
#
_exptl.entry_id    6PY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.452 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PY0 
_cell.length_a            53.242 
_cell.length_b            75.749 
_cell.length_c            89.263 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H30 O' 
_chem_comp.formula_weight    286.452 
_chem_comp.id                RTL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RTL sing 264 n n 
C1 C6 RTL sing 265 n n 
C1 C16 RTL sing 266 n n 
C1 C17 RTL sing 267 n n 
C2 C3 RTL sing 268 n n 
C2 H21 RTL sing 269 n n 
C2 H22 RTL sing 270 n n 
C3 C4 RTL sing 271 n n 
C3 H31 RTL sing 272 n n 
C3 H32 RTL sing 273 n n 
C4 C5 RTL sing 274 n n 
C4 H41 RTL sing 275 n n 
C4 H42 RTL sing 276 n n 
C5 C6 RTL doub 277 n n 
C5 C18 RTL sing 278 n n 
C6 C7 RTL sing 279 n n 
C7 C8 RTL doub 280 e n 
C7 H7 RTL sing 281 n n 
C8 C9 RTL sing 282 n n 
C8 H8 RTL sing 283 n n 
C9 C10 RTL doub 284 e n 
C9 C19 RTL sing 285 n n 
C10 C11 RTL sing 286 n n 
C10 H10 RTL sing 287 n n 
C11 C12 RTL doub 288 e n 
C11 H11 RTL sing 289 n n 
C12 C13 RTL sing 290 n n 
C12 H12 RTL sing 291 n n 
C13 C14 RTL doub 292 e n 
C13 C20 RTL sing 293 n n 
C14 C15 RTL sing 294 n n 
C14 H14 RTL sing 295 n n 
C15 O1 RTL sing 296 n n 
C15 H151 RTL sing 297 n n 
C15 H152 RTL sing 298 n n 
O1 HO1 RTL sing 299 n n 
C16 H161 RTL sing 300 n n 
C16 H162 RTL sing 301 n n 
C16 H163 RTL sing 302 n n 
C17 H171 RTL sing 303 n n 
C17 H172 RTL sing 304 n n 
C17 H173 RTL sing 305 n n 
C18 H181 RTL sing 306 n n 
C18 H182 RTL sing 307 n n 
C18 H183 RTL sing 308 n n 
C19 H191 RTL sing 309 n n 
C19 H192 RTL sing 310 n n 
C19 H193 RTL sing 311 n n 
C20 H201 RTL sing 312 n n 
C20 H202 RTL sing 313 n n 
C20 H203 RTL sing 314 n n 
#
_atom_sites.entry_id                     6PY0 
_atom_sites.fract_transf_matrix[1][1]    0.018782 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011203 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RTL C 1 201 1 RTL RTL . 
E 3 HOH A 1 201 90 HOH HOH . 
E 3 HOH A 2 202 87 HOH HOH . 
E 3 HOH A 3 203 34 HOH HOH . 
E 3 HOH A 4 204 6 HOH HOH . 
E 3 HOH A 5 205 32 HOH HOH . 
E 3 HOH A 6 206 26 HOH HOH . 
E 3 HOH A 7 207 60 HOH HOH . 
E 3 HOH A 8 208 28 HOH HOH . 
E 3 HOH A 9 209 73 HOH HOH . 
E 3 HOH A 10 210 50 HOH HOH . 
E 3 HOH A 11 211 53 HOH HOH . 
E 3 HOH A 12 212 10 HOH HOH . 
E 3 HOH A 13 213 79 HOH HOH . 
E 3 HOH A 14 214 23 HOH HOH . 
E 3 HOH A 15 215 4 HOH HOH . 
E 3 HOH A 16 216 75 HOH HOH . 
E 3 HOH A 17 217 17 HOH HOH . 
E 3 HOH A 18 218 18 HOH HOH . 
E 3 HOH A 19 219 11 HOH HOH . 
E 3 HOH A 20 220 61 HOH HOH . 
E 3 HOH A 21 221 13 HOH HOH . 
E 3 HOH A 22 222 52 HOH HOH . 
E 3 HOH A 23 223 88 HOH HOH . 
E 3 HOH A 24 224 95 HOH HOH . 
E 3 HOH A 25 225 3 HOH HOH . 
E 3 HOH A 26 226 82 HOH HOH . 
E 3 HOH A 27 227 46 HOH HOH . 
E 3 HOH A 28 228 21 HOH HOH . 
E 3 HOH A 29 229 96 HOH HOH . 
E 3 HOH A 30 230 30 HOH HOH . 
E 3 HOH A 31 231 86 HOH HOH . 
E 3 HOH A 32 232 66 HOH HOH . 
E 3 HOH A 33 233 54 HOH HOH . 
E 3 HOH A 34 234 65 HOH HOH . 
E 3 HOH A 35 235 101 HOH HOH . 
E 3 HOH A 36 236 55 HOH HOH . 
F 3 HOH B 1 201 70 HOH HOH . 
F 3 HOH B 2 202 74 HOH HOH . 
F 3 HOH B 3 203 27 HOH HOH . 
F 3 HOH B 4 204 22 HOH HOH . 
F 3 HOH B 5 205 31 HOH HOH . 
F 3 HOH B 6 206 5 HOH HOH . 
F 3 HOH B 7 207 29 HOH HOH . 
F 3 HOH B 8 208 44 HOH HOH . 
F 3 HOH B 9 209 68 HOH HOH . 
F 3 HOH B 10 210 16 HOH HOH . 
F 3 HOH B 11 211 85 HOH HOH . 
F 3 HOH B 12 212 42 HOH HOH . 
F 3 HOH B 13 213 7 HOH HOH . 
F 3 HOH B 14 214 8 HOH HOH . 
F 3 HOH B 15 215 47 HOH HOH . 
F 3 HOH B 16 216 45 HOH HOH . 
F 3 HOH B 17 217 1 HOH HOH . 
F 3 HOH B 18 218 37 HOH HOH . 
F 3 HOH B 19 219 15 HOH HOH . 
F 3 HOH B 20 220 20 HOH HOH . 
F 3 HOH B 21 221 2 HOH HOH . 
F 3 HOH B 22 222 91 HOH HOH . 
F 3 HOH B 23 223 59 HOH HOH . 
F 3 HOH B 24 224 93 HOH HOH . 
F 3 HOH B 25 225 14 HOH HOH . 
F 3 HOH B 26 226 81 HOH HOH . 
F 3 HOH B 27 227 36 HOH HOH . 
F 3 HOH B 28 228 12 HOH HOH . 
F 3 HOH B 29 229 99 HOH HOH . 
F 3 HOH B 30 230 89 HOH HOH . 
F 3 HOH B 31 231 69 HOH HOH . 
F 3 HOH B 32 232 77 HOH HOH . 
F 3 HOH B 33 233 94 HOH HOH . 
F 3 HOH B 34 234 98 HOH HOH . 
F 3 HOH B 35 235 62 HOH HOH . 
F 3 HOH B 36 236 92 HOH HOH . 
F 3 HOH B 37 237 49 HOH HOH . 
F 3 HOH B 38 238 35 HOH HOH . 
G 3 HOH C 1 301 78 HOH HOH . 
G 3 HOH C 2 302 80 HOH HOH . 
G 3 HOH C 3 303 41 HOH HOH . 
G 3 HOH C 4 304 24 HOH HOH . 
G 3 HOH C 5 305 63 HOH HOH . 
G 3 HOH C 6 306 25 HOH HOH . 
G 3 HOH C 7 307 64 HOH HOH . 
G 3 HOH C 8 308 51 HOH HOH . 
G 3 HOH C 9 309 83 HOH HOH . 
G 3 HOH C 10 310 67 HOH HOH . 
G 3 HOH C 11 311 76 HOH HOH . 
G 3 HOH C 12 312 48 HOH HOH . 
G 3 HOH C 13 313 56 HOH HOH . 
G 3 HOH C 14 314 43 HOH HOH . 
G 3 HOH C 15 315 9 HOH HOH . 
G 3 HOH C 16 316 71 HOH HOH . 
G 3 HOH C 17 317 57 HOH HOH . 
G 3 HOH C 18 318 100 HOH HOH . 
G 3 HOH C 19 319 40 HOH HOH . 
G 3 HOH C 20 320 19 HOH HOH . 
G 3 HOH C 21 321 39 HOH HOH . 
G 3 HOH C 22 322 97 HOH HOH . 
G 3 HOH C 23 323 38 HOH HOH . 
G 3 HOH C 24 324 33 HOH HOH . 
G 3 HOH C 25 325 58 HOH HOH . 
G 3 HOH C 26 326 72 HOH HOH . 
G 3 HOH C 27 327 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RTL . . . D 2 -5.081 1.349 -11.894 1 72.47 ? C1 RTL 201 C 1 
HETATM 2 C C2 RTL . . . D 2 -3.893 0.454 -12.245 1 68.85 ? C2 RTL 201 C 1 
HETATM 3 C C3 RTL . . . D 2 -4.206 -0.551 -13.368 1 64.28 ? C3 RTL 201 C 1 
HETATM 4 C C4 RTL . . . D 2 -5.6 -1.147 -13.24 1 59.01 ? C4 RTL 201 C 1 
HETATM 5 C C5 RTL . . . D 2 -6.522 0.037 -13.239 1 69.04 ? C5 RTL 201 C 1 
HETATM 6 C C6 RTL . . . D 2 -6.435 0.714 -12.127 1 68.12 ? C6 RTL 201 C 1 
HETATM 7 C C7 RTL . . . D 2 -7.58 0.807 -11.206 1 62.12 ? C7 RTL 201 C 1 
HETATM 8 C C8 RTL . . . D 2 -7.445 0.443 -9.952 1 53.36 ? C8 RTL 201 C 1 
HETATM 9 C C9 RTL . . . D 2 -8.476 0.499 -8.911 1 51.7 ? C9 RTL 201 C 1 
HETATM 10 C C10 RTL . . . D 2 -8.326 1.406 -7.952 1 43.21 ? C10 RTL 201 C 1 
HETATM 11 C C11 RTL . . . D 2 -9.201 1.539 -6.813 1 50.3 ? C11 RTL 201 C 1 
HETATM 12 C C12 RTL . . . D 2 -8.726 0.926 -5.734 1 49.63 ? C12 RTL 201 C 1 
HETATM 13 C C13 RTL . . . D 2 -9.308 0.838 -4.394 1 51.49 ? C13 RTL 201 C 1 
HETATM 14 C C14 RTL . . . D 2 -8.853 -0.087 -3.546 1 40.59 ? C14 RTL 201 C 1 
HETATM 15 C C15 RTL . . . D 2 -9.417 -0.204 -2.153 1 52.64 ? C15 RTL 201 C 1 
HETATM 16 O O1 RTL . . . D 2 -8.663 -1.17 -1.404 1 53.19 ? O1 RTL 201 C 1 
HETATM 17 C C16 RTL . . . D 2 -4.99 2.574 -12.772 1 61.71 ? C16 RTL 201 C 1 
HETATM 18 C C17 RTL . . . D 2 -4.947 1.725 -10.436 1 64.22 ? C17 RTL 201 C 1 
HETATM 19 C C18 RTL . . . D 2 -7.346 0.493 -14.398 1 62.69 ? C18 RTL 201 C 1 
HETATM 20 C C19 RTL . . . D 2 -9.614 -0.463 -8.918 1 51.37 ? C19 RTL 201 C 1 
HETATM 21 C C20 RTL . . . D 2 -10.37 1.781 -3.968 1 49.81 ? C20 RTL 201 C 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           21 
#