data_6PYB # _model_server_result.job_id gmLFMzBd0yf7OS78VuQ0jA _model_server_result.datetime_utc '2024-12-19 19:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6PYB # _exptl.entry_id 6PYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PYB _cell.length_a 51.953 _cell.length_b 51.953 _cell.length_c 148.354 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_664 -y+1,-x+1,-z-1/4 0 -1 0 -1 0 0 0 0 -1 51.953 51.953 -37.0885 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 164 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 50 A ASP 50 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc2 A OD2 ASP 50 A ASP 50 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A O GLU 52 A GLU 52 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 A O ALA 160 A ALA 160 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 C CA CA . A CA 302 1_555 D O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 C CA CA . A CA 302 1_555 D O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc7 C CA CA . A CA 302 1_555 D O HOH . A HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6PYB _atom_sites.fract_transf_matrix[1][1] 0.019248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P5G A 1 301 201 P5G LIG . C 3 CA A 1 302 1 CA CA . D 4 HOH A 1 401 172 HOH HOH . D 4 HOH A 2 402 114 HOH HOH . D 4 HOH A 3 403 99 HOH HOH . D 4 HOH A 4 404 26 HOH HOH . D 4 HOH A 5 405 27 HOH HOH . D 4 HOH A 6 406 43 HOH HOH . D 4 HOH A 7 407 38 HOH HOH . D 4 HOH A 8 408 71 HOH HOH . D 4 HOH A 9 409 79 HOH HOH . D 4 HOH A 10 410 80 HOH HOH . D 4 HOH A 11 411 131 HOH HOH . D 4 HOH A 12 412 36 HOH HOH . D 4 HOH A 13 413 24 HOH HOH . D 4 HOH A 14 414 96 HOH HOH . D 4 HOH A 15 415 92 HOH HOH . D 4 HOH A 16 416 30 HOH HOH . D 4 HOH A 17 417 50 HOH HOH . D 4 HOH A 18 418 125 HOH HOH . D 4 HOH A 19 419 46 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 8 HOH HOH . D 4 HOH A 22 422 57 HOH HOH . D 4 HOH A 23 423 16 HOH HOH . D 4 HOH A 24 424 121 HOH HOH . D 4 HOH A 25 425 44 HOH HOH . D 4 HOH A 26 426 137 HOH HOH . D 4 HOH A 27 427 106 HOH HOH . D 4 HOH A 28 428 77 HOH HOH . D 4 HOH A 29 429 154 HOH HOH . D 4 HOH A 30 430 48 HOH HOH . D 4 HOH A 31 431 13 HOH HOH . D 4 HOH A 32 432 17 HOH HOH . D 4 HOH A 33 433 39 HOH HOH . D 4 HOH A 34 434 59 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 56 HOH HOH . D 4 HOH A 37 437 2 HOH HOH . D 4 HOH A 38 438 52 HOH HOH . D 4 HOH A 39 439 69 HOH HOH . D 4 HOH A 40 440 110 HOH HOH . D 4 HOH A 41 441 134 HOH HOH . D 4 HOH A 42 442 10 HOH HOH . D 4 HOH A 43 443 33 HOH HOH . D 4 HOH A 44 444 23 HOH HOH . D 4 HOH A 45 445 65 HOH HOH . D 4 HOH A 46 446 14 HOH HOH . D 4 HOH A 47 447 22 HOH HOH . D 4 HOH A 48 448 34 HOH HOH . D 4 HOH A 49 449 169 HOH HOH . D 4 HOH A 50 450 60 HOH HOH . D 4 HOH A 51 451 29 HOH HOH . D 4 HOH A 52 452 173 HOH HOH . D 4 HOH A 53 453 161 HOH HOH . D 4 HOH A 54 454 138 HOH HOH . D 4 HOH A 55 455 175 HOH HOH . D 4 HOH A 56 456 107 HOH HOH . D 4 HOH A 57 457 86 HOH HOH . D 4 HOH A 58 458 3 HOH HOH . D 4 HOH A 59 459 28 HOH HOH . D 4 HOH A 60 460 111 HOH HOH . D 4 HOH A 61 461 9 HOH HOH . D 4 HOH A 62 462 15 HOH HOH . D 4 HOH A 63 463 174 HOH HOH . D 4 HOH A 64 464 104 HOH HOH . D 4 HOH A 65 465 67 HOH HOH . D 4 HOH A 66 466 75 HOH HOH . D 4 HOH A 67 467 98 HOH HOH . D 4 HOH A 68 468 100 HOH HOH . D 4 HOH A 69 469 158 HOH HOH . D 4 HOH A 70 470 21 HOH HOH . D 4 HOH A 71 471 53 HOH HOH . D 4 HOH A 72 472 176 HOH HOH . D 4 HOH A 73 473 70 HOH HOH . D 4 HOH A 74 474 62 HOH HOH . D 4 HOH A 75 475 42 HOH HOH . D 4 HOH A 76 476 87 HOH HOH . D 4 HOH A 77 477 112 HOH HOH . D 4 HOH A 78 478 160 HOH HOH . D 4 HOH A 79 479 109 HOH HOH . D 4 HOH A 80 480 89 HOH HOH . D 4 HOH A 81 481 72 HOH HOH . D 4 HOH A 82 482 51 HOH HOH . D 4 HOH A 83 483 118 HOH HOH . D 4 HOH A 84 484 166 HOH HOH . D 4 HOH A 85 485 63 HOH HOH . D 4 HOH A 86 486 66 HOH HOH . D 4 HOH A 87 487 47 HOH HOH . D 4 HOH A 88 488 94 HOH HOH . D 4 HOH A 89 489 45 HOH HOH . D 4 HOH A 90 490 147 HOH HOH . D 4 HOH A 91 491 31 HOH HOH . D 4 HOH A 92 492 122 HOH HOH . D 4 HOH A 93 493 78 HOH HOH . D 4 HOH A 94 494 143 HOH HOH . D 4 HOH A 95 495 168 HOH HOH . D 4 HOH A 96 496 151 HOH HOH . D 4 HOH A 97 497 120 HOH HOH . D 4 HOH A 98 498 171 HOH HOH . D 4 HOH A 99 499 84 HOH HOH . D 4 HOH A 100 500 167 HOH HOH . D 4 HOH A 101 501 101 HOH HOH . D 4 HOH A 102 502 95 HOH HOH . D 4 HOH A 103 503 170 HOH HOH . D 4 HOH A 104 504 130 HOH HOH . D 4 HOH A 105 505 155 HOH HOH . D 4 HOH A 106 506 68 HOH HOH . D 4 HOH A 107 507 108 HOH HOH . D 4 HOH A 108 508 1 HOH HOH . D 4 HOH A 109 509 83 HOH HOH . D 4 HOH A 110 510 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.893 _atom_site.Cartn_y 12.766 _atom_site.Cartn_z -18.046 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #