data_6PYC # _model_server_result.job_id lxYOKKhNntCaiZPXFl_9-g _model_server_result.datetime_utc '2024-11-22 14:13:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6PYC # _exptl.entry_id 6PYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.508 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,5beta,14alpha,15beta)-3,5-dihydroxy-14,15-epoxybufa-20,22-dienolide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PYC _cell.length_a 128.483 _cell.length_b 128.483 _cell.length_c 333.335 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 H CYS 23 1_555 A SG CYS 94 H CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 139 H CYS 139 1_555 A SG CYS 195 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 145 A CYS 145 1_555 C SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 D SG CYS 23 B CYS 23 1_555 D SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf8 D SG CYS 134 B CYS 134 1_555 D SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C24 H32 O5' _chem_comp.formula_weight 400.508 _chem_comp.id P4S _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,5beta,14alpha,15beta)-3,5-dihydroxy-14,15-epoxybufa-20,22-dienolide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 P4S sing 235 n n C16 C17 P4S sing 236 n n O4 C4 P4S sing 237 n n C15 C14 P4S sing 238 n n C15 O P4S sing 239 n n C17 C18 P4S sing 240 n n C17 C13 P4S sing 241 n n C4 C3 P4S sing 242 n n C4 C5 P4S sing 243 n n C22 C18 P4S sing 244 n n C22 C21 P4S doub 245 n n C3 C2 P4S sing 246 n n C18 C19 P4S doub 247 n n C21 C20 P4S sing 248 n n C7 C8 P4S sing 249 n n C7 C6 P4S sing 250 n n C14 C13 P4S sing 251 n n C14 O P4S sing 252 n n C14 C9 P4S sing 253 n n C12 C13 P4S sing 254 n n C12 C11 P4S sing 255 n n C19 O1 P4S sing 256 n n C20 O1 P4S sing 257 n n C20 O2 P4S doub 258 n n C13 C23 P4S sing 259 n n C5 C6 P4S sing 260 n n C10 C9 P4S sing 261 n n C10 C11 P4S sing 262 n n C10 C1 P4S sing 263 n n C2 C1 P4S sing 264 n n C8 C9 P4S sing 265 n n C6 C1 P4S sing 266 n n C6 O3 P4S sing 267 n n C1 C P4S sing 268 n n C2 H1 P4S sing 269 n n C2 H2 P4S sing 270 n n C3 H3 P4S sing 271 n n C3 H4 P4S sing 272 n n C4 H5 P4S sing 273 n n C5 H6 P4S sing 274 n n C5 H7 P4S sing 275 n n C7 H8 P4S sing 276 n n C7 H9 P4S sing 277 n n O3 H10 P4S sing 278 n n O4 H11 P4S sing 279 n n C19 H12 P4S sing 280 n n C21 H13 P4S sing 281 n n C22 H14 P4S sing 282 n n C17 H15 P4S sing 283 n n C23 H16 P4S sing 284 n n C23 H17 P4S sing 285 n n C23 H18 P4S sing 286 n n C12 H19 P4S sing 287 n n C12 H20 P4S sing 288 n n C11 H21 P4S sing 289 n n C11 H22 P4S sing 290 n n C10 H23 P4S sing 291 n n C H24 P4S sing 292 n n C H25 P4S sing 293 n n C H26 P4S sing 294 n n C16 H27 P4S sing 295 n n C16 H28 P4S sing 296 n n C15 H29 P4S sing 297 n n C9 H30 P4S sing 298 n n C8 H31 P4S sing 299 n n C8 H32 P4S sing 300 n n # _atom_sites.entry_id 6PYC _atom_sites.fract_transf_matrix[1][1] 0.007783 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 P4S H 1 301 2 P4S MBG . F 5 P4S L 1 301 1 P4S MBG . G 6 SO4 A 1 301 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P4S . . . E 5 13.523 107.562 60.665 1 66.09 ? C1 P4S 301 H 1 HETATM 2 C C2 P4S . . . E 5 12.743 107.658 61.984 1 66.23 ? C2 P4S 301 H 1 HETATM 3 C C3 P4S . . . E 5 13.609 107.452 63.226 1 65.98 ? C3 P4S 301 H 1 HETATM 4 C C4 P4S . . . E 5 14.718 108.491 63.313 1 65.76 ? C4 P4S 301 H 1 HETATM 5 C C5 P4S . . . E 5 14.907 109.25 62.004 1 65.92 ? C5 P4S 301 H 1 HETATM 6 C C6 P4S . . . E 5 14.837 108.375 60.758 1 66.37 ? C6 P4S 301 H 1 HETATM 7 C C7 P4S . . . E 5 16.129 107.568 60.754 1 67.97 ? C7 P4S 301 H 1 HETATM 8 O O1 P4S . . . E 5 14.27 100.004 55.828 1 66.03 ? O1 P4S 301 H 1 HETATM 9 O O2 P4S . . . E 5 12.826 98.566 54.858 1 66.38 ? O2 P4S 301 H 1 HETATM 10 O O3 P4S . . . E 5 14.931 109.282 59.652 1 66.68 ? O3 P4S 301 H 1 HETATM 11 O O4 P4S . . . E 5 14.377 109.449 64.316 1 68.37 ? O4 P4S 301 H 1 HETATM 12 C C20 P4S . . . E 5 13.082 99.328 55.814 1 66.01 ? C20 P4S 301 H 1 HETATM 13 C C19 P4S . . . E 5 14.585 100.827 56.829 1 66.15 ? C19 P4S 301 H 1 HETATM 14 C C21 P4S . . . E 5 12.181 99.498 56.862 1 66.44 ? C21 P4S 301 H 1 HETATM 15 C C22 P4S . . . E 5 12.501 100.355 57.914 1 66.37 ? C22 P4S 301 H 1 HETATM 16 C C18 P4S . . . E 5 13.717 101.038 57.911 1 66.03 ? C18 P4S 301 H 1 HETATM 17 C C17 P4S . . . E 5 14.024 101.967 59.055 1 66.59 ? C17 P4S 301 H 1 HETATM 18 C C13 P4S . . . E 5 13.741 103.454 58.765 1 67.53 ? C13 P4S 301 H 1 HETATM 19 C C23 P4S . . . E 5 13.471 103.783 57.296 1 68.45 ? C23 P4S 301 H 1 HETATM 20 C C12 P4S . . . E 5 12.57 103.893 59.636 1 67.4 ? C12 P4S 301 H 1 HETATM 21 C C11 P4S . . . E 5 12.457 105.408 59.774 1 67.4 ? C11 P4S 301 H 1 HETATM 22 C C10 P4S . . . E 5 13.721 106.067 60.345 1 66.47 ? C10 P4S 301 H 1 HETATM 23 C C P4S . . . E 5 12.637 108.214 59.602 1 66.29 ? C P4S 301 H 1 HETATM 24 C C16 P4S . . . E 5 15.456 101.881 59.603 1 68.01 ? C16 P4S 301 H 1 HETATM 25 C C15 P4S . . . E 5 16.053 103.289 59.651 1 68.75 ? C15 P4S 301 H 1 HETATM 26 O O P4S . . . E 5 16.16 103.99 58.411 1 69.33 ? O P4S 301 H 1 HETATM 27 C C14 P4S . . . E 5 14.971 104.245 59.178 1 68.15 ? C14 P4S 301 H 1 HETATM 28 C C9 P4S . . . E 5 14.863 105.776 59.376 1 67.53 ? C9 P4S 301 H 1 HETATM 29 C C8 P4S . . . E 5 16.196 106.393 59.799 1 68.91 ? C8 P4S 301 H 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #