data_6PYR
#
_model_server_result.job_id            H6WNd_dN7FZZFmnMdzr1UA 
_model_server_result.datetime_utc      '2025-01-10 14:28:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pyr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    6PYR 
#
_exptl.entry_id    6PYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              446.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PYR 
_cell.length_a            90.471 
_cell.length_b            108.078 
_cell.length_c            142.346 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H22 N6 O' 
_chem_comp.formula_weight    446.503 
_chem_comp.id                P5J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C31 P5J sing 237 n n 
C31 N32 P5J doub 238 n y 
C31 N30 P5J sing 239 n y 
N32 C33 P5J sing 240 n y 
N30 C29 P5J doub 241 n y 
C33 C28 P5J doub 242 n y 
C29 C28 P5J sing 243 n y 
C25 C24 P5J doub 244 n y 
C25 C26 P5J sing 245 n y 
C28 C1 P5J sing 246 n n 
C24 C23 P5J sing 247 n y 
C2 C1 P5J sing 248 n y 
C2 C3 P5J doub 249 n y 
C1 N6 P5J doub 250 n y 
C3 N4 P5J sing 251 n y 
C26 C21 P5J doub 252 n y 
N6 C5 P5J sing 253 n y 
N4 C5 P5J sing 254 n y 
N4 N9 P5J sing 255 n y 
C23 C22 P5J doub 256 n y 
C5 C7 P5J doub 257 n y 
N9 C8 P5J doub 258 n y 
C7 C8 P5J sing 259 n y 
C7 C10 P5J sing 260 n n 
C21 C22 P5J sing 261 n y 
C21 C20 P5J sing 262 n n 
C10 C11 P5J doub 263 n y 
C10 C15 P5J sing 264 n y 
C11 C12 P5J sing 265 n y 
C15 C14 P5J doub 266 n y 
C20 C16 P5J sing 267 n n 
C12 C13 P5J doub 268 n y 
C14 C13 P5J sing 269 n y 
C14 C16 P5J sing 270 n n 
C13 N19 P5J sing 271 n n 
C16 C17 P5J sing 272 n n 
C16 C27 P5J sing 273 n n 
N19 C17 P5J sing 274 n n 
C17 O18 P5J doub 275 n n 
C2 H1 P5J sing 276 n n 
C3 H2 P5J sing 277 n n 
C8 H3 P5J sing 278 n n 
C11 H4 P5J sing 279 n n 
C12 H5 P5J sing 280 n n 
C15 H6 P5J sing 281 n n 
C23 H7 P5J sing 282 n n 
C24 H8 P5J sing 283 n n 
C27 H9 P5J sing 284 n n 
C27 H10 P5J sing 285 n n 
C27 H11 P5J sing 286 n n 
C33 H12 P5J sing 287 n n 
C34 H13 P5J sing 288 n n 
C34 H14 P5J sing 289 n n 
C34 H15 P5J sing 290 n n 
N19 H16 P5J sing 291 n n 
C20 H17 P5J sing 292 n n 
C20 H18 P5J sing 293 n n 
C22 H19 P5J sing 294 n n 
C25 H20 P5J sing 295 n n 
C26 H21 P5J sing 296 n n 
C29 H22 P5J sing 297 n n 
#
_atom_sites.entry_id                     6PYR 
_atom_sites.fract_transf_matrix[1][1]    0.011053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009253 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 P5J A 1 1101 1 P5J INX . 
D 4 HOH A 1 1201 23 HOH HOH . 
D 4 HOH A 2 1202 5 HOH HOH . 
D 4 HOH A 3 1203 62 HOH HOH . 
D 4 HOH A 4 1204 20 HOH HOH . 
D 4 HOH A 5 1205 74 HOH HOH . 
D 4 HOH A 6 1206 2 HOH HOH . 
D 4 HOH A 7 1207 37 HOH HOH . 
D 4 HOH A 8 1208 36 HOH HOH . 
D 4 HOH A 9 1209 73 HOH HOH . 
D 4 HOH A 10 1210 15 HOH HOH . 
D 4 HOH A 11 1211 13 HOH HOH . 
D 4 HOH A 12 1212 19 HOH HOH . 
D 4 HOH A 13 1213 172 HOH HOH . 
D 4 HOH A 14 1214 51 HOH HOH . 
D 4 HOH A 15 1215 16 HOH HOH . 
D 4 HOH A 16 1216 55 HOH HOH . 
D 4 HOH A 17 1217 89 HOH HOH . 
D 4 HOH A 18 1218 33 HOH HOH . 
D 4 HOH A 19 1219 48 HOH HOH . 
D 4 HOH A 20 1220 91 HOH HOH . 
D 4 HOH A 21 1221 47 HOH HOH . 
D 4 HOH A 22 1222 26 HOH HOH . 
D 4 HOH A 23 1223 64 HOH HOH . 
D 4 HOH A 24 1224 32 HOH HOH . 
D 4 HOH A 25 1225 3 HOH HOH . 
D 4 HOH A 26 1226 49 HOH HOH . 
D 4 HOH A 27 1227 6 HOH HOH . 
D 4 HOH A 28 1228 40 HOH HOH . 
D 4 HOH A 29 1229 35 HOH HOH . 
D 4 HOH A 30 1230 17 HOH HOH . 
D 4 HOH A 31 1231 31 HOH HOH . 
D 4 HOH A 32 1232 27 HOH HOH . 
D 4 HOH A 33 1233 12 HOH HOH . 
D 4 HOH A 34 1234 92 HOH HOH . 
D 4 HOH A 35 1235 90 HOH HOH . 
D 4 HOH A 36 1236 11 HOH HOH . 
D 4 HOH A 37 1237 41 HOH HOH . 
D 4 HOH A 38 1238 22 HOH HOH . 
D 4 HOH A 39 1239 94 HOH HOH . 
D 4 HOH A 40 1240 39 HOH HOH . 
D 4 HOH A 41 1241 72 HOH HOH . 
D 4 HOH A 42 1242 7 HOH HOH . 
D 4 HOH A 43 1243 60 HOH HOH . 
D 4 HOH A 44 1244 4 HOH HOH . 
D 4 HOH A 45 1245 21 HOH HOH . 
D 4 HOH A 46 1246 25 HOH HOH . 
D 4 HOH A 47 1247 63 HOH HOH . 
D 4 HOH A 48 1248 18 HOH HOH . 
D 4 HOH A 49 1249 78 HOH HOH . 
D 4 HOH A 50 1250 53 HOH HOH . 
D 4 HOH A 51 1251 1 HOH HOH . 
D 4 HOH A 52 1252 81 HOH HOH . 
D 4 HOH A 53 1253 95 HOH HOH . 
D 4 HOH A 54 1254 68 HOH HOH . 
D 4 HOH A 55 1255 65 HOH HOH . 
D 4 HOH A 56 1256 165 HOH HOH . 
D 4 HOH A 57 1257 9 HOH HOH . 
D 4 HOH A 58 1258 43 HOH HOH . 
D 4 HOH A 59 1259 79 HOH HOH . 
D 4 HOH A 60 1260 98 HOH HOH . 
D 4 HOH A 61 1261 56 HOH HOH . 
E 4 HOH B 1 601 86 HOH HOH . 
E 4 HOH B 2 602 100 HOH HOH . 
E 4 HOH B 3 603 28 HOH HOH . 
E 4 HOH B 4 604 45 HOH HOH . 
E 4 HOH B 5 605 77 HOH HOH . 
E 4 HOH B 6 606 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P5J . . . C 3 34.221 13.269 32.126 1 47.64 ? C1 P5J 1101 A 1 
HETATM 2 C C2 P5J . . . C 3 33.439 14.425 31.847 1 47.54 ? C2 P5J 1101 A 1 
HETATM 3 C C3 P5J . . . C 3 33.899 15.64 32.211 1 50.16 ? C3 P5J 1101 A 1 
HETATM 4 C C5 P5J . . . C 3 35.839 14.604 33.13 1 46.93 ? C5 P5J 1101 A 1 
HETATM 5 C C7 P5J . . . C 3 37.014 15.026 33.79 1 42.53 ? C7 P5J 1101 A 1 
HETATM 6 C C8 P5J . . . C 3 36.911 16.424 33.9 1 48.06 ? C8 P5J 1101 A 1 
HETATM 7 C C11 P5J . . . C 3 37.938 12.796 34.568 1 58.2 ? C11 P5J 1101 A 1 
HETATM 8 C C12 P5J . . . C 3 38.937 12.024 35.134 1 54.73 ? C12 P5J 1101 A 1 
HETATM 9 C C15 P5J . . . C 3 39.313 14.768 34.825 1 56.7 ? C15 P5J 1101 A 1 
HETATM 10 C C16 P5J . . . C 3 41.682 14.31 35.945 1 60.14 ? C16 P5J 1101 A 1 
HETATM 11 C C17 P5J . . . C 3 42.202 12.967 36.426 1 61.13 ? C17 P5J 1101 A 1 
HETATM 12 C C21 P5J . . . C 3 43.124 14.073 33.803 1 69.89 ? C21 P5J 1101 A 1 
HETATM 13 C C23 P5J . . . C 3 44.755 12.492 32.96 1 72.58 ? C23 P5J 1101 A 1 
HETATM 14 C C24 P5J . . . C 3 44.092 12.443 31.739 1 70.38 ? C24 P5J 1101 A 1 
HETATM 15 C C27 P5J . . . C 3 41.522 15.266 37.134 1 62.08 ? C27 P5J 1101 A 1 
HETATM 16 C C31 P5J . . . C 3 32.984 9.441 30.872 1 54.87 ? C31 P5J 1101 A 1 
HETATM 17 C C33 P5J . . . C 3 34.715 10.891 31.398 1 51.58 ? C33 P5J 1101 A 1 
HETATM 18 C C34 P5J . . . C 3 32.499 8.085 30.417 1 52.48 ? C34 P5J 1101 A 1 
HETATM 19 N N4 P5J . . . C 3 35.1 15.724 32.861 1 45.59 ? N4 P5J 1101 A 1 
HETATM 20 N N6 P5J . . . C 3 35.382 13.403 32.749 1 56.71 ? N6 P5J 1101 A 1 
HETATM 21 N N9 P5J . . . C 3 35.789 16.835 33.359 1 53.89 ? N9 P5J 1101 A 1 
HETATM 22 C C10 P5J . . . C 3 38.112 14.183 34.364 1 49.1 ? C10 P5J 1101 A 1 
HETATM 23 C C13 P5J . . . C 3 40.134 12.611 35.554 1 62.73 ? C13 P5J 1101 A 1 
HETATM 24 C C14 P5J . . . C 3 40.309 13.983 35.384 1 56.64 ? C14 P5J 1101 A 1 
HETATM 25 O O18 P5J . . . C 3 43.278 12.754 36.942 1 86.08 ? O18 P5J 1101 A 1 
HETATM 26 N N19 P5J . . . C 3 41.262 12.048 36.154 1 65.25 ? N19 P5J 1101 A 1 
HETATM 27 C C20 P5J . . . C 3 42.6 14.979 34.899 1 64.61 ? C20 P5J 1101 A 1 
HETATM 28 C C22 P5J . . . C 3 44.276 13.312 33.981 1 66.76 ? C22 P5J 1101 A 1 
HETATM 29 C C25 P5J . . . C 3 42.947 13.211 31.554 1 75.08 ? C25 P5J 1101 A 1 
HETATM 30 C C26 P5J . . . C 3 42.472 14.025 32.579 1 76.35 ? C26 P5J 1101 A 1 
HETATM 31 C C28 P5J . . . C 3 33.776 11.904 31.699 1 45.28 ? C28 P5J 1101 A 1 
HETATM 32 C C29 P5J . . . C 3 32.419 11.578 31.54 1 51.96 ? C29 P5J 1101 A 1 
HETATM 33 N N30 P5J . . . C 3 32.074 10.355 31.143 1 47.5 ? N30 P5J 1101 A 1 
HETATM 34 N N32 P5J . . . C 3 34.283 9.696 30.994 1 60 ? N32 P5J 1101 A 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#