data_6PYS # _model_server_result.job_id Nna41R4kb14HOU4qE3XfQA _model_server_result.datetime_utc '2025-01-10 10:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6PYS # _exptl.entry_id 6PYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PYS _cell.length_a 58.44 _cell.length_b 133.914 _cell.length_c 141.719 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H22 N6 O' _chem_comp.formula_weight 446.503 _chem_comp.id P5J _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C31 P5J sing 250 n n C31 N32 P5J doub 251 n y C31 N30 P5J sing 252 n y N32 C33 P5J sing 253 n y N30 C29 P5J doub 254 n y C33 C28 P5J doub 255 n y C29 C28 P5J sing 256 n y C25 C24 P5J doub 257 n y C25 C26 P5J sing 258 n y C28 C1 P5J sing 259 n n C24 C23 P5J sing 260 n y C2 C1 P5J sing 261 n y C2 C3 P5J doub 262 n y C1 N6 P5J doub 263 n y C3 N4 P5J sing 264 n y C26 C21 P5J doub 265 n y N6 C5 P5J sing 266 n y N4 C5 P5J sing 267 n y N4 N9 P5J sing 268 n y C23 C22 P5J doub 269 n y C5 C7 P5J doub 270 n y N9 C8 P5J doub 271 n y C7 C8 P5J sing 272 n y C7 C10 P5J sing 273 n n C21 C22 P5J sing 274 n y C21 C20 P5J sing 275 n n C10 C11 P5J doub 276 n y C10 C15 P5J sing 277 n y C11 C12 P5J sing 278 n y C15 C14 P5J doub 279 n y C20 C16 P5J sing 280 n n C12 C13 P5J doub 281 n y C14 C13 P5J sing 282 n y C14 C16 P5J sing 283 n n C13 N19 P5J sing 284 n n C16 C17 P5J sing 285 n n C16 C27 P5J sing 286 n n N19 C17 P5J sing 287 n n C17 O18 P5J doub 288 n n C2 H1 P5J sing 289 n n C3 H2 P5J sing 290 n n C8 H3 P5J sing 291 n n C11 H4 P5J sing 292 n n C12 H5 P5J sing 293 n n C15 H6 P5J sing 294 n n C23 H7 P5J sing 295 n n C24 H8 P5J sing 296 n n C27 H9 P5J sing 297 n n C27 H10 P5J sing 298 n n C27 H11 P5J sing 299 n n C33 H12 P5J sing 300 n n C34 H13 P5J sing 301 n n C34 H14 P5J sing 302 n n C34 H15 P5J sing 303 n n N19 H16 P5J sing 304 n n C20 H17 P5J sing 305 n n C20 H18 P5J sing 306 n n C22 H19 P5J sing 307 n n C25 H20 P5J sing 308 n n C26 H21 P5J sing 309 n n C29 H22 P5J sing 310 n n # _atom_sites.entry_id 6PYS _atom_sites.fract_transf_matrix[1][1] 0.017112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P5J A 1 1101 1 P5J INX . C 3 GOL A 1 1102 1 GOL GOL . D 3 GOL A 1 1103 2 GOL GOL . E 4 HOH A 1 1201 2 HOH HOH . E 4 HOH A 2 1202 155 HOH HOH . E 4 HOH A 3 1203 9 HOH HOH . E 4 HOH A 4 1204 1 HOH HOH . E 4 HOH A 5 1205 70 HOH HOH . E 4 HOH A 6 1206 49 HOH HOH . E 4 HOH A 7 1207 171 HOH HOH . E 4 HOH A 8 1208 42 HOH HOH . E 4 HOH A 9 1209 38 HOH HOH . E 4 HOH A 10 1210 13 HOH HOH . E 4 HOH A 11 1211 18 HOH HOH . E 4 HOH A 12 1212 32 HOH HOH . E 4 HOH A 13 1213 59 HOH HOH . E 4 HOH A 14 1214 30 HOH HOH . E 4 HOH A 15 1215 71 HOH HOH . E 4 HOH A 16 1216 27 HOH HOH . E 4 HOH A 17 1217 56 HOH HOH . E 4 HOH A 18 1218 173 HOH HOH . E 4 HOH A 19 1219 44 HOH HOH . E 4 HOH A 20 1220 102 HOH HOH . E 4 HOH A 21 1221 130 HOH HOH . E 4 HOH A 22 1222 37 HOH HOH . E 4 HOH A 23 1223 29 HOH HOH . E 4 HOH A 24 1224 35 HOH HOH . E 4 HOH A 25 1225 15 HOH HOH . E 4 HOH A 26 1226 140 HOH HOH . E 4 HOH A 27 1227 141 HOH HOH . E 4 HOH A 28 1228 23 HOH HOH . E 4 HOH A 29 1229 134 HOH HOH . E 4 HOH A 30 1230 7 HOH HOH . E 4 HOH A 31 1231 67 HOH HOH . E 4 HOH A 32 1232 72 HOH HOH . E 4 HOH A 33 1233 5 HOH HOH . E 4 HOH A 34 1234 53 HOH HOH . E 4 HOH A 35 1235 25 HOH HOH . E 4 HOH A 36 1236 55 HOH HOH . E 4 HOH A 37 1237 69 HOH HOH . E 4 HOH A 38 1238 57 HOH HOH . E 4 HOH A 39 1239 41 HOH HOH . E 4 HOH A 40 1240 33 HOH HOH . E 4 HOH A 41 1241 74 HOH HOH . E 4 HOH A 42 1242 109 HOH HOH . E 4 HOH A 43 1243 3 HOH HOH . E 4 HOH A 44 1244 16 HOH HOH . E 4 HOH A 45 1245 143 HOH HOH . E 4 HOH A 46 1246 122 HOH HOH . E 4 HOH A 47 1247 64 HOH HOH . E 4 HOH A 48 1248 50 HOH HOH . E 4 HOH A 49 1249 6 HOH HOH . E 4 HOH A 50 1250 45 HOH HOH . E 4 HOH A 51 1251 12 HOH HOH . E 4 HOH A 52 1252 51 HOH HOH . E 4 HOH A 53 1253 4 HOH HOH . E 4 HOH A 54 1254 104 HOH HOH . E 4 HOH A 55 1255 85 HOH HOH . E 4 HOH A 56 1256 68 HOH HOH . E 4 HOH A 57 1257 54 HOH HOH . E 4 HOH A 58 1258 10 HOH HOH . E 4 HOH A 59 1259 21 HOH HOH . E 4 HOH A 60 1260 43 HOH HOH . E 4 HOH A 61 1261 128 HOH HOH . E 4 HOH A 62 1262 39 HOH HOH . E 4 HOH A 63 1263 100 HOH HOH . E 4 HOH A 64 1264 157 HOH HOH . E 4 HOH A 65 1265 83 HOH HOH . E 4 HOH A 66 1266 78 HOH HOH . E 4 HOH A 67 1267 40 HOH HOH . E 4 HOH A 68 1268 34 HOH HOH . E 4 HOH A 69 1269 91 HOH HOH . E 4 HOH A 70 1270 24 HOH HOH . E 4 HOH A 71 1271 8 HOH HOH . E 4 HOH A 72 1272 123 HOH HOH . E 4 HOH A 73 1273 31 HOH HOH . E 4 HOH A 74 1274 87 HOH HOH . E 4 HOH A 75 1275 99 HOH HOH . E 4 HOH A 76 1276 61 HOH HOH . E 4 HOH A 77 1277 103 HOH HOH . E 4 HOH A 78 1278 77 HOH HOH . E 4 HOH A 79 1279 80 HOH HOH . E 4 HOH A 80 1280 156 HOH HOH . E 4 HOH A 81 1281 131 HOH HOH . E 4 HOH A 82 1282 147 HOH HOH . E 4 HOH A 83 1283 95 HOH HOH . E 4 HOH A 84 1284 79 HOH HOH . E 4 HOH A 85 1285 46 HOH HOH . E 4 HOH A 86 1286 11 HOH HOH . E 4 HOH A 87 1287 169 HOH HOH . E 4 HOH A 88 1288 84 HOH HOH . E 4 HOH A 89 1289 36 HOH HOH . E 4 HOH A 90 1290 124 HOH HOH . E 4 HOH A 91 1291 114 HOH HOH . E 4 HOH A 92 1292 94 HOH HOH . E 4 HOH A 93 1293 52 HOH HOH . E 4 HOH A 94 1294 158 HOH HOH . E 4 HOH A 95 1295 28 HOH HOH . E 4 HOH A 96 1296 172 HOH HOH . E 4 HOH A 97 1297 113 HOH HOH . E 4 HOH A 98 1298 88 HOH HOH . E 4 HOH A 99 1299 73 HOH HOH . E 4 HOH A 100 1300 66 HOH HOH . E 4 HOH A 101 1301 86 HOH HOH . E 4 HOH A 102 1302 97 HOH HOH . E 4 HOH A 103 1303 166 HOH HOH . E 4 HOH A 104 1304 76 HOH HOH . E 4 HOH A 105 1305 167 HOH HOH . E 4 HOH A 106 1306 152 HOH HOH . E 4 HOH A 107 1307 47 HOH HOH . E 4 HOH A 108 1308 163 HOH HOH . E 4 HOH A 109 1309 151 HOH HOH . E 4 HOH A 110 1310 96 HOH HOH . E 4 HOH A 111 1311 142 HOH HOH . E 4 HOH A 112 1312 137 HOH HOH . E 4 HOH A 113 1313 106 HOH HOH . E 4 HOH A 114 1314 115 HOH HOH . E 4 HOH A 115 1315 19 HOH HOH . E 4 HOH A 116 1316 149 HOH HOH . E 4 HOH A 117 1317 14 HOH HOH . E 4 HOH A 118 1318 93 HOH HOH . E 4 HOH A 119 1319 110 HOH HOH . E 4 HOH A 120 1320 17 HOH HOH . E 4 HOH A 121 1321 92 HOH HOH . E 4 HOH A 122 1322 81 HOH HOH . E 4 HOH A 123 1323 90 HOH HOH . E 4 HOH A 124 1324 75 HOH HOH . E 4 HOH A 125 1325 101 HOH HOH . E 4 HOH A 126 1326 164 HOH HOH . E 4 HOH A 127 1327 161 HOH HOH . E 4 HOH A 128 1328 26 HOH HOH . E 4 HOH A 129 1329 153 HOH HOH . E 4 HOH A 130 1330 139 HOH HOH . E 4 HOH A 131 1331 98 HOH HOH . E 4 HOH A 132 1332 118 HOH HOH . E 4 HOH A 133 1333 112 HOH HOH . E 4 HOH A 134 1334 111 HOH HOH . E 4 HOH A 135 1335 48 HOH HOH . E 4 HOH A 136 1336 154 HOH HOH . E 4 HOH A 137 1337 132 HOH HOH . E 4 HOH A 138 1338 170 HOH HOH . E 4 HOH A 139 1339 105 HOH HOH . E 4 HOH A 140 1340 82 HOH HOH . E 4 HOH A 141 1341 62 HOH HOH . E 4 HOH A 142 1342 108 HOH HOH . E 4 HOH A 143 1343 150 HOH HOH . E 4 HOH A 144 1344 160 HOH HOH . E 4 HOH A 145 1345 22 HOH HOH . E 4 HOH A 146 1346 146 HOH HOH . E 4 HOH A 147 1347 145 HOH HOH . E 4 HOH A 148 1348 117 HOH HOH . E 4 HOH A 149 1349 126 HOH HOH . E 4 HOH A 150 1350 174 HOH HOH . E 4 HOH A 151 1351 58 HOH HOH . E 4 HOH A 152 1352 148 HOH HOH . E 4 HOH A 153 1353 162 HOH HOH . E 4 HOH A 154 1354 125 HOH HOH . E 4 HOH A 155 1355 63 HOH HOH . E 4 HOH A 156 1356 129 HOH HOH . E 4 HOH A 157 1357 136 HOH HOH . E 4 HOH A 158 1358 65 HOH HOH . E 4 HOH A 159 1359 60 HOH HOH . E 4 HOH A 160 1360 107 HOH HOH . E 4 HOH A 161 1361 127 HOH HOH . E 4 HOH A 162 1362 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P5J . . . B 2 -18.619 14.413 29.866 1 62.29 ? C1 P5J 1101 A 1 HETATM 2 C C2 P5J . . . B 2 -18.149 15.515 30.625 1 61.92 ? C2 P5J 1101 A 1 HETATM 3 C C3 P5J . . . B 2 -16.832 15.822 30.579 1 58.64 ? C3 P5J 1101 A 1 HETATM 4 C C5 P5J . . . B 2 -16.464 13.979 29.094 1 53.87 ? C5 P5J 1101 A 1 HETATM 5 C C7 P5J . . . B 2 -15.365 13.403 28.426 1 53.55 ? C7 P5J 1101 A 1 HETATM 6 C C8 P5J . . . B 2 -14.248 14.166 28.799 1 53.59 ? C8 P5J 1101 A 1 HETATM 7 C C11 P5J . . . B 2 -14.225 11.936 26.72 1 55.1 ? C11 P5J 1101 A 1 HETATM 8 C C12 P5J . . . B 2 -14.194 10.812 25.915 1 52.23 ? C12 P5J 1101 A 1 HETATM 9 C C15 P5J . . . B 2 -16.41 11.279 27.515 1 56.36 ? C15 P5J 1101 A 1 HETATM 10 C C16 P5J . . . B 2 -17.341 9.018 26.45 1 58.58 ? C16 P5J 1101 A 1 HETATM 11 C C17 P5J . . . B 2 -16.591 8.136 25.471 1 54.12 ? C17 P5J 1101 A 1 HETATM 12 C C21 P5J . . . B 2 -18.708 8.877 28.62 1 71.79 ? C21 P5J 1101 A 1 HETATM 13 C C23 P5J . . . B 2 -20.959 9.515 29.215 1 72.92 ? C23 P5J 1101 A 1 HETATM 14 C C24 P5J . . . B 2 -20.481 10.152 30.351 1 69.28 ? C24 P5J 1101 A 1 HETATM 15 C C27 P5J . . . B 2 -18.534 9.615 25.689 1 63.66 ? C27 P5J 1101 A 1 HETATM 16 C C31 P5J . . . B 2 -22.694 13.425 29.846 1 83.61 ? C31 P5J 1101 A 1 HETATM 17 C C33 P5J . . . B 2 -20.831 14.087 31.055 1 74.53 ? C33 P5J 1101 A 1 HETATM 18 C C34 P5J . . . B 2 -24.159 13.068 29.829 1 87.92 ? C34 P5J 1101 A 1 HETATM 19 N N4 P5J . . . B 2 -15.988 15.049 29.819 1 54.59 ? N4 P5J 1101 A 1 HETATM 20 N N6 P5J . . . B 2 -17.771 13.694 29.138 1 59.98 ? N6 P5J 1101 A 1 HETATM 21 N N9 P5J . . . B 2 -14.616 15.13 29.604 1 53.56 ? N9 P5J 1101 A 1 HETATM 22 C C10 P5J . . . B 2 -15.342 12.202 27.536 1 55.89 ? C10 P5J 1101 A 1 HETATM 23 C C13 P5J . . . B 2 -15.265 9.919 25.892 1 53.78 ? C13 P5J 1101 A 1 HETATM 24 C C14 P5J . . . B 2 -16.366 10.152 26.714 1 53.06 ? C14 P5J 1101 A 1 HETATM 25 O O18 P5J . . . B 2 -16.98 7.091 24.995 1 66.63 ? O18 P5J 1101 A 1 HETATM 26 N N19 P5J . . . B 2 -15.428 8.735 25.183 1 52.01 ? N19 P5J 1101 A 1 HETATM 27 C C20 P5J . . . B 2 -17.735 8.184 27.689 1 63.59 ? C20 P5J 1101 A 1 HETATM 28 C C22 P5J . . . B 2 -20.075 8.873 28.357 1 76.09 ? C22 P5J 1101 A 1 HETATM 29 C C25 P5J . . . B 2 -19.121 10.152 30.625 1 71.98 ? C25 P5J 1101 A 1 HETATM 30 C C26 P5J . . . B 2 -18.241 9.51 29.764 1 72.8 ? C26 P5J 1101 A 1 HETATM 31 C C28 P5J . . . B 2 -20.062 14.062 29.874 1 72.31 ? C28 P5J 1101 A 1 HETATM 32 C C29 P5J . . . B 2 -20.716 13.698 28.68 1 71.86 ? C29 P5J 1101 A 1 HETATM 33 N N30 P5J . . . B 2 -22.01 13.39 28.711 1 78.93 ? N30 P5J 1101 A 1 HETATM 34 N N32 P5J . . . B 2 -22.121 13.764 30.995 1 80.21 ? N32 P5J 1101 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #