data_6PYS # _model_server_result.job_id nhTKAHfEVN8ypK2wvt7ywA _model_server_result.datetime_utc '2024-10-18 16:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 6PYS # _exptl.entry_id 6PYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PYS _cell.length_a 58.44 _cell.length_b 133.914 _cell.length_c 141.719 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6PYS _atom_sites.fract_transf_matrix[1][1] 0.017112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P5J A 1 1101 1 P5J INX . C 3 GOL A 1 1102 1 GOL GOL . D 3 GOL A 1 1103 2 GOL GOL . E 4 HOH A 1 1201 2 HOH HOH . E 4 HOH A 2 1202 155 HOH HOH . E 4 HOH A 3 1203 9 HOH HOH . E 4 HOH A 4 1204 1 HOH HOH . E 4 HOH A 5 1205 70 HOH HOH . E 4 HOH A 6 1206 49 HOH HOH . E 4 HOH A 7 1207 171 HOH HOH . E 4 HOH A 8 1208 42 HOH HOH . E 4 HOH A 9 1209 38 HOH HOH . E 4 HOH A 10 1210 13 HOH HOH . E 4 HOH A 11 1211 18 HOH HOH . E 4 HOH A 12 1212 32 HOH HOH . E 4 HOH A 13 1213 59 HOH HOH . E 4 HOH A 14 1214 30 HOH HOH . E 4 HOH A 15 1215 71 HOH HOH . E 4 HOH A 16 1216 27 HOH HOH . E 4 HOH A 17 1217 56 HOH HOH . E 4 HOH A 18 1218 173 HOH HOH . E 4 HOH A 19 1219 44 HOH HOH . E 4 HOH A 20 1220 102 HOH HOH . E 4 HOH A 21 1221 130 HOH HOH . E 4 HOH A 22 1222 37 HOH HOH . E 4 HOH A 23 1223 29 HOH HOH . E 4 HOH A 24 1224 35 HOH HOH . E 4 HOH A 25 1225 15 HOH HOH . E 4 HOH A 26 1226 140 HOH HOH . E 4 HOH A 27 1227 141 HOH HOH . E 4 HOH A 28 1228 23 HOH HOH . E 4 HOH A 29 1229 134 HOH HOH . E 4 HOH A 30 1230 7 HOH HOH . E 4 HOH A 31 1231 67 HOH HOH . E 4 HOH A 32 1232 72 HOH HOH . E 4 HOH A 33 1233 5 HOH HOH . E 4 HOH A 34 1234 53 HOH HOH . E 4 HOH A 35 1235 25 HOH HOH . E 4 HOH A 36 1236 55 HOH HOH . E 4 HOH A 37 1237 69 HOH HOH . E 4 HOH A 38 1238 57 HOH HOH . E 4 HOH A 39 1239 41 HOH HOH . E 4 HOH A 40 1240 33 HOH HOH . E 4 HOH A 41 1241 74 HOH HOH . E 4 HOH A 42 1242 109 HOH HOH . E 4 HOH A 43 1243 3 HOH HOH . E 4 HOH A 44 1244 16 HOH HOH . E 4 HOH A 45 1245 143 HOH HOH . E 4 HOH A 46 1246 122 HOH HOH . E 4 HOH A 47 1247 64 HOH HOH . E 4 HOH A 48 1248 50 HOH HOH . E 4 HOH A 49 1249 6 HOH HOH . E 4 HOH A 50 1250 45 HOH HOH . E 4 HOH A 51 1251 12 HOH HOH . E 4 HOH A 52 1252 51 HOH HOH . E 4 HOH A 53 1253 4 HOH HOH . E 4 HOH A 54 1254 104 HOH HOH . E 4 HOH A 55 1255 85 HOH HOH . E 4 HOH A 56 1256 68 HOH HOH . E 4 HOH A 57 1257 54 HOH HOH . E 4 HOH A 58 1258 10 HOH HOH . E 4 HOH A 59 1259 21 HOH HOH . E 4 HOH A 60 1260 43 HOH HOH . E 4 HOH A 61 1261 128 HOH HOH . E 4 HOH A 62 1262 39 HOH HOH . E 4 HOH A 63 1263 100 HOH HOH . E 4 HOH A 64 1264 157 HOH HOH . E 4 HOH A 65 1265 83 HOH HOH . E 4 HOH A 66 1266 78 HOH HOH . E 4 HOH A 67 1267 40 HOH HOH . E 4 HOH A 68 1268 34 HOH HOH . E 4 HOH A 69 1269 91 HOH HOH . E 4 HOH A 70 1270 24 HOH HOH . E 4 HOH A 71 1271 8 HOH HOH . E 4 HOH A 72 1272 123 HOH HOH . E 4 HOH A 73 1273 31 HOH HOH . E 4 HOH A 74 1274 87 HOH HOH . E 4 HOH A 75 1275 99 HOH HOH . E 4 HOH A 76 1276 61 HOH HOH . E 4 HOH A 77 1277 103 HOH HOH . E 4 HOH A 78 1278 77 HOH HOH . E 4 HOH A 79 1279 80 HOH HOH . E 4 HOH A 80 1280 156 HOH HOH . E 4 HOH A 81 1281 131 HOH HOH . E 4 HOH A 82 1282 147 HOH HOH . E 4 HOH A 83 1283 95 HOH HOH . E 4 HOH A 84 1284 79 HOH HOH . E 4 HOH A 85 1285 46 HOH HOH . E 4 HOH A 86 1286 11 HOH HOH . E 4 HOH A 87 1287 169 HOH HOH . E 4 HOH A 88 1288 84 HOH HOH . E 4 HOH A 89 1289 36 HOH HOH . E 4 HOH A 90 1290 124 HOH HOH . E 4 HOH A 91 1291 114 HOH HOH . E 4 HOH A 92 1292 94 HOH HOH . E 4 HOH A 93 1293 52 HOH HOH . E 4 HOH A 94 1294 158 HOH HOH . E 4 HOH A 95 1295 28 HOH HOH . E 4 HOH A 96 1296 172 HOH HOH . E 4 HOH A 97 1297 113 HOH HOH . E 4 HOH A 98 1298 88 HOH HOH . E 4 HOH A 99 1299 73 HOH HOH . E 4 HOH A 100 1300 66 HOH HOH . E 4 HOH A 101 1301 86 HOH HOH . E 4 HOH A 102 1302 97 HOH HOH . E 4 HOH A 103 1303 166 HOH HOH . E 4 HOH A 104 1304 76 HOH HOH . E 4 HOH A 105 1305 167 HOH HOH . E 4 HOH A 106 1306 152 HOH HOH . E 4 HOH A 107 1307 47 HOH HOH . E 4 HOH A 108 1308 163 HOH HOH . E 4 HOH A 109 1309 151 HOH HOH . E 4 HOH A 110 1310 96 HOH HOH . E 4 HOH A 111 1311 142 HOH HOH . E 4 HOH A 112 1312 137 HOH HOH . E 4 HOH A 113 1313 106 HOH HOH . E 4 HOH A 114 1314 115 HOH HOH . E 4 HOH A 115 1315 19 HOH HOH . E 4 HOH A 116 1316 149 HOH HOH . E 4 HOH A 117 1317 14 HOH HOH . E 4 HOH A 118 1318 93 HOH HOH . E 4 HOH A 119 1319 110 HOH HOH . E 4 HOH A 120 1320 17 HOH HOH . E 4 HOH A 121 1321 92 HOH HOH . E 4 HOH A 122 1322 81 HOH HOH . E 4 HOH A 123 1323 90 HOH HOH . E 4 HOH A 124 1324 75 HOH HOH . E 4 HOH A 125 1325 101 HOH HOH . E 4 HOH A 126 1326 164 HOH HOH . E 4 HOH A 127 1327 161 HOH HOH . E 4 HOH A 128 1328 26 HOH HOH . E 4 HOH A 129 1329 153 HOH HOH . E 4 HOH A 130 1330 139 HOH HOH . E 4 HOH A 131 1331 98 HOH HOH . E 4 HOH A 132 1332 118 HOH HOH . E 4 HOH A 133 1333 112 HOH HOH . E 4 HOH A 134 1334 111 HOH HOH . E 4 HOH A 135 1335 48 HOH HOH . E 4 HOH A 136 1336 154 HOH HOH . E 4 HOH A 137 1337 132 HOH HOH . E 4 HOH A 138 1338 170 HOH HOH . E 4 HOH A 139 1339 105 HOH HOH . E 4 HOH A 140 1340 82 HOH HOH . E 4 HOH A 141 1341 62 HOH HOH . E 4 HOH A 142 1342 108 HOH HOH . E 4 HOH A 143 1343 150 HOH HOH . E 4 HOH A 144 1344 160 HOH HOH . E 4 HOH A 145 1345 22 HOH HOH . E 4 HOH A 146 1346 146 HOH HOH . E 4 HOH A 147 1347 145 HOH HOH . E 4 HOH A 148 1348 117 HOH HOH . E 4 HOH A 149 1349 126 HOH HOH . E 4 HOH A 150 1350 174 HOH HOH . E 4 HOH A 151 1351 58 HOH HOH . E 4 HOH A 152 1352 148 HOH HOH . E 4 HOH A 153 1353 162 HOH HOH . E 4 HOH A 154 1354 125 HOH HOH . E 4 HOH A 155 1355 63 HOH HOH . E 4 HOH A 156 1356 129 HOH HOH . E 4 HOH A 157 1357 136 HOH HOH . E 4 HOH A 158 1358 65 HOH HOH . E 4 HOH A 159 1359 60 HOH HOH . E 4 HOH A 160 1360 107 HOH HOH . E 4 HOH A 161 1361 127 HOH HOH . E 4 HOH A 162 1362 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 12.271 -4.896 -7.227 0.6 33.79 ? C1 GOL 1103 A 1 HETATM 2 O O1 GOL . . . D 3 11.668 -6.053 -7.651 0 22.05 ? O1 GOL 1103 A 1 HETATM 3 C C2 GOL . . . D 3 12.873 -5.196 -5.867 0.6 34.42 ? C2 GOL 1103 A 1 HETATM 4 O O2 GOL . . . D 3 13.901 -6.187 -5.991 0.6 38.84 ? O2 GOL 1103 A 1 HETATM 5 C C3 GOL . . . D 3 13.497 -3.934 -5.307 0.6 34.59 ? C3 GOL 1103 A 1 HETATM 6 O O3 GOL . . . D 3 14.191 -4.272 -4.108 0.6 34.54 ? O3 GOL 1103 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #