data_6PYU
#
_model_server_result.job_id            n_AZBtgHHYuqlQWxvJOVeA 
_model_server_result.datetime_utc      '2025-01-10 14:35:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
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_entry.id    6PYU 
#
_exptl.entry_id    6PYU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              384.431 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(3S)-1'-(cyclopropanecarbonyl)-5-(quinoxalin-6-yl)spiro[indole-3,2'-pyrrolidin]-2(1H)-one" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PYU 
_cell.length_a            90.439 
_cell.length_b            108.587 
_cell.length_c            142.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6PYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H20 N4 O2' 
_chem_comp.formula_weight    384.431 
_chem_comp.id                P5V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(3S)-1'-(cyclopropanecarbonyl)-5-(quinoxalin-6-yl)spiro[indole-3,2'-pyrrolidin]-2(1H)-one" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 P5V sing 237 n n 
C19 C17 P5V sing 238 n n 
C18 C17 P5V sing 239 n n 
C24 C25 P5V doub 240 n y 
C24 N23 P5V sing 241 n y 
C25 N26 P5V sing 242 n y 
C17 C15 P5V sing 243 n n 
N23 C22 P5V doub 244 n y 
N26 C27 P5V doub 245 n y 
C22 C27 P5V sing 246 n y 
C22 C21 P5V sing 247 n y 
C27 C28 P5V sing 248 n y 
C21 C20 P5V doub 249 n y 
C15 O16 P5V doub 250 n n 
C15 N14 P5V sing 251 n n 
C28 C29 P5V doub 252 n y 
C20 C29 P5V sing 253 n y 
C20 C7 P5V sing 254 n n 
C13 N14 P5V sing 255 n n 
C13 C12 P5V sing 256 n n 
N14 C10 P5V sing 257 n n 
C7 C8 P5V doub 258 n y 
C7 C6 P5V sing 259 n y 
C8 C9 P5V sing 260 n y 
C6 C5 P5V doub 261 n y 
C9 C10 P5V sing 262 n n 
C9 C4 P5V doub 263 n y 
C5 C4 P5V sing 264 n y 
C10 C2 P5V sing 265 n n 
C10 C11 P5V sing 266 n n 
C12 C11 P5V sing 267 n n 
C4 N3 P5V sing 268 n n 
N3 C2 P5V sing 269 n n 
C2 O1 P5V doub 270 n n 
C5 H1 P5V sing 271 n n 
C6 H2 P5V sing 272 n n 
C8 H3 P5V sing 273 n n 
C11 H4 P5V sing 274 n n 
C11 H5 P5V sing 275 n n 
C12 H6 P5V sing 276 n n 
C12 H7 P5V sing 277 n n 
C17 H8 P5V sing 278 n n 
C18 H9 P5V sing 279 n n 
C18 H10 P5V sing 280 n n 
C19 H11 P5V sing 281 n n 
C19 H12 P5V sing 282 n n 
C21 H13 P5V sing 283 n n 
C24 H14 P5V sing 284 n n 
N3 H15 P5V sing 285 n n 
C13 H16 P5V sing 286 n n 
C13 H17 P5V sing 287 n n 
C25 H18 P5V sing 288 n n 
C28 H19 P5V sing 289 n n 
C29 H20 P5V sing 290 n n 
#
_atom_sites.entry_id                     6PYU 
_atom_sites.fract_transf_matrix[1][1]    0.011057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 P5V A 1 1101 1 P5V INX . 
D 4 HOH A 1 1201 4 HOH HOH . 
D 4 HOH A 2 1202 2 HOH HOH . 
D 4 HOH A 3 1203 1 HOH HOH . 
D 4 HOH A 4 1204 5 HOH HOH . 
D 4 HOH A 5 1205 7 HOH HOH . 
D 4 HOH A 6 1206 6 HOH HOH . 
D 4 HOH A 7 1207 3 HOH HOH . 
D 4 HOH A 8 1208 10 HOH HOH . 
D 4 HOH A 9 1209 8 HOH HOH . 
D 4 HOH A 10 1210 9 HOH HOH . 
E 4 HOH B 1 601 11 HOH HOH . 
E 4 HOH B 2 602 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 P5V . . . C 3 42.557 12.497 36.237 1 71.59 ? C2 P5V 1101 A 1 
HETATM 2 C C4 P5V . . . C 3 40.414 12.087 35.671 1 69.07 ? C4 P5V 1101 A 1 
HETATM 3 C C5 P5V . . . C 3 39.167 11.502 35.519 1 81.58 ? C5 P5V 1101 A 1 
HETATM 4 C C6 P5V . . . C 3 38.133 12.246 34.993 1 89.79 ? C6 P5V 1101 A 1 
HETATM 5 C C7 P5V . . . C 3 38.319 13.594 34.604 1 83.92 ? C7 P5V 1101 A 1 
HETATM 6 C C8 P5V . . . C 3 39.587 14.176 34.788 1 86.2 ? C8 P5V 1101 A 1 
HETATM 7 C C11 P5V . . . C 3 42.072 14.979 36.552 1 61.11 ? C11 P5V 1101 A 1 
HETATM 8 C C12 P5V . . . C 3 42.351 16.189 35.63 1 46.91 ? C12 P5V 1101 A 1 
HETATM 9 C C15 P5V . . . C 3 43.307 13.193 33.503 1 79.44 ? C15 P5V 1101 A 1 
HETATM 10 C C17 P5V . . . C 3 44.16 13.646 32.36 1 52.97 ? C17 P5V 1101 A 1 
HETATM 11 C C18 P5V . . . C 3 44.511 12.606 31.3 1 75.61 ? C18 P5V 1101 A 1 
HETATM 12 C C19 P5V . . . C 3 43.505 13.722 30.986 1 105.84 ? C19 P5V 1101 A 1 
HETATM 13 C C21 P5V . . . C 3 36.117 13.737 33.447 1 84.54 ? C21 P5V 1101 A 1 
HETATM 14 C C24 P5V . . . C 3 33.018 14.564 31.907 1 78.56 ? C24 P5V 1101 A 1 
HETATM 15 C C27 P5V . . . C 3 35.066 15.895 33.033 1 72.09 ? C27 P5V 1101 A 1 
HETATM 16 O O1 P5V . . . C 3 43.674 12.305 36.628 1 81.21 ? O1 P5V 1101 A 1 
HETATM 17 N N3 P5V . . . C 3 41.581 11.57 36.193 1 92.95 ? N3 P5V 1101 A 1 
HETATM 18 C C9 P5V . . . C 3 40.607 13.426 35.3 1 90.7 ? C9 P5V 1101 A 1 
HETATM 19 C C10 P5V . . . C 3 42.038 13.767 35.611 1 84 ? C10 P5V 1101 A 1 
HETATM 20 C C13 P5V . . . C 3 43.113 15.543 34.44 1 73.01 ? C13 P5V 1101 A 1 
HETATM 21 N N14 P5V . . . C 3 42.874 14.078 34.451 1 64.05 ? N14 P5V 1101 A 1 
HETATM 22 O O16 P5V . . . C 3 43.058 12.001 33.564 1 94.62 ? O16 P5V 1101 A 1 
HETATM 23 C C20 P5V . . . C 3 37.191 14.377 34.035 1 67.48 ? C20 P5V 1101 A 1 
HETATM 24 C C22 P5V . . . C 3 35.054 14.48 32.951 1 72.18 ? C22 P5V 1101 A 1 
HETATM 25 N N23 P5V . . . C 3 34.026 13.85 32.378 1 89.53 ? N23 P5V 1101 A 1 
HETATM 26 C C25 P5V . . . C 3 33.012 15.962 32.005 1 64.37 ? C25 P5V 1101 A 1 
HETATM 27 N N26 P5V . . . C 3 34.035 16.611 32.546 1 74.29 ? N26 P5V 1101 A 1 
HETATM 28 C C28 P5V . . . C 3 36.15 16.514 33.633 1 57.41 ? C28 P5V 1101 A 1 
HETATM 29 C C29 P5V . . . C 3 37.176 15.779 34.1 1 62.82 ? C29 P5V 1101 A 1 
#
_model_server_stats.io_time_ms              149 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#