data_6PZ1 # _model_server_result.job_id IUWMPHMwY8lqVjfXyGYXig _model_server_result.datetime_utc '2024-11-29 14:35:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6pz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6PZ1 # _exptl.entry_id 6PZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.21 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-(5-fluoro-1H-indol-3-yl)pyrrolidine-2,5-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6PZ1 _cell.length_a 87.479 _cell.length_b 97.858 _cell.length_c 131.966 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6PZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,M 1 1 B,F,G,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 B NE2 HIS 336 B HIS 346 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C12 H9 F N2 O2' _chem_comp.formula_weight 232.21 _chem_comp.id AOJ _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-(5-fluoro-1H-indol-3-yl)pyrrolidine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 AOJ doub 13 n y C7 C6 AOJ sing 14 n y C8 C11 AOJ sing 15 n y N2 C6 AOJ sing 16 n y N2 C5 AOJ sing 17 n y C6 C9 AOJ doub 18 n y C5 C12 AOJ doub 19 n y C11 F1 AOJ sing 20 n n C11 C10 AOJ doub 21 n y C9 C10 AOJ sing 22 n y C9 C12 AOJ sing 23 n y C12 C1 AOJ sing 24 n n O2 C4 AOJ doub 25 n n C4 C1 AOJ sing 26 n n C4 N1 AOJ sing 27 n n C1 C2 AOJ sing 28 n n N1 C3 AOJ sing 29 n n C2 C3 AOJ sing 30 n n C3 O1 AOJ doub 31 n n N1 H4 AOJ sing 32 n n C5 H5 AOJ sing 33 n n C7 H7 AOJ sing 34 n n C8 H8 AOJ sing 35 n n C10 H9 AOJ sing 36 n n N2 H6 AOJ sing 37 n n C1 H1 AOJ sing 38 n n C2 H3 AOJ sing 39 n n C2 H2 AOJ sing 40 n n # _atom_sites.entry_id 6PZ1 _atom_sites.fract_transf_matrix[1][1] 0.011431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 1 HEM HEM . D 3 AOJ A 1 502 2 AOJ IPD . E 4 GOL A 1 503 1 GOL GOL . F 2 HEM B 1 501 2 HEM HEM . G 3 AOJ B 1 502 1 AOJ IPD . H 3 AOJ B 1 503 3 AOJ IPD . I 4 GOL B 1 504 3 GOL GOL . J 4 GOL B 1 505 4 GOL GOL . K 4 GOL B 1 506 5 GOL GOL . L 4 GOL B 1 507 17 GOL GOL . M 5 HOH A 1 601 14 HOH HOH . M 5 HOH A 2 602 41 HOH HOH . M 5 HOH A 3 603 71 HOH HOH . M 5 HOH A 4 604 10 HOH HOH . M 5 HOH A 5 605 46 HOH HOH . M 5 HOH A 6 606 13 HOH HOH . M 5 HOH A 7 607 27 HOH HOH . M 5 HOH A 8 608 228 HOH HOH . M 5 HOH A 9 609 26 HOH HOH . M 5 HOH A 10 610 131 HOH HOH . M 5 HOH A 11 611 11 HOH HOH . M 5 HOH A 12 612 163 HOH HOH . M 5 HOH A 13 613 189 HOH HOH . M 5 HOH A 14 614 123 HOH HOH . M 5 HOH A 15 615 51 HOH HOH . M 5 HOH A 16 616 89 HOH HOH . M 5 HOH A 17 617 87 HOH HOH . M 5 HOH A 18 618 12 HOH HOH . M 5 HOH A 19 619 102 HOH HOH . M 5 HOH A 20 620 80 HOH HOH . M 5 HOH A 21 621 100 HOH HOH . M 5 HOH A 22 622 198 HOH HOH . M 5 HOH A 23 623 161 HOH HOH . M 5 HOH A 24 624 69 HOH HOH . M 5 HOH A 25 625 218 HOH HOH . M 5 HOH A 26 626 144 HOH HOH . M 5 HOH A 27 627 154 HOH HOH . M 5 HOH A 28 628 32 HOH HOH . M 5 HOH A 29 629 28 HOH HOH . M 5 HOH A 30 630 29 HOH HOH . M 5 HOH A 31 631 45 HOH HOH . M 5 HOH A 32 632 42 HOH HOH . M 5 HOH A 33 633 197 HOH HOH . M 5 HOH A 34 634 138 HOH HOH . M 5 HOH A 35 635 88 HOH HOH . M 5 HOH A 36 636 9 HOH HOH . M 5 HOH A 37 637 158 HOH HOH . M 5 HOH A 38 638 153 HOH HOH . M 5 HOH A 39 639 15 HOH HOH . M 5 HOH A 40 640 129 HOH HOH . M 5 HOH A 41 641 143 HOH HOH . M 5 HOH A 42 642 81 HOH HOH . M 5 HOH A 43 643 190 HOH HOH . M 5 HOH A 44 644 54 HOH HOH . M 5 HOH A 45 645 156 HOH HOH . M 5 HOH A 46 646 118 HOH HOH . M 5 HOH A 47 647 122 HOH HOH . M 5 HOH A 48 648 101 HOH HOH . M 5 HOH A 49 649 220 HOH HOH . M 5 HOH A 50 650 120 HOH HOH . M 5 HOH A 51 651 137 HOH HOH . M 5 HOH A 52 652 177 HOH HOH . M 5 HOH A 53 653 113 HOH HOH . M 5 HOH A 54 654 128 HOH HOH . M 5 HOH A 55 655 104 HOH HOH . M 5 HOH A 56 656 125 HOH HOH . M 5 HOH A 57 657 219 HOH HOH . M 5 HOH A 58 658 136 HOH HOH . M 5 HOH A 59 659 55 HOH HOH . M 5 HOH A 60 660 127 HOH HOH . M 5 HOH A 61 661 178 HOH HOH . M 5 HOH A 62 662 115 HOH HOH . M 5 HOH A 63 663 211 HOH HOH . M 5 HOH A 64 664 67 HOH HOH . M 5 HOH A 65 665 33 HOH HOH . M 5 HOH A 66 666 199 HOH HOH . M 5 HOH A 67 667 112 HOH HOH . M 5 HOH A 68 668 121 HOH HOH . M 5 HOH A 69 669 68 HOH HOH . M 5 HOH A 70 670 36 HOH HOH . M 5 HOH A 71 671 58 HOH HOH . M 5 HOH A 72 672 130 HOH HOH . M 5 HOH A 73 673 117 HOH HOH . M 5 HOH A 74 674 213 HOH HOH . M 5 HOH A 75 675 78 HOH HOH . M 5 HOH A 76 676 57 HOH HOH . M 5 HOH A 77 677 175 HOH HOH . M 5 HOH A 78 678 201 HOH HOH . M 5 HOH A 79 679 132 HOH HOH . M 5 HOH A 80 680 44 HOH HOH . M 5 HOH A 81 681 43 HOH HOH . M 5 HOH A 82 682 103 HOH HOH . M 5 HOH A 83 683 212 HOH HOH . M 5 HOH A 84 684 186 HOH HOH . M 5 HOH A 85 685 124 HOH HOH . M 5 HOH A 86 686 135 HOH HOH . M 5 HOH A 87 687 16 HOH HOH . M 5 HOH A 88 688 155 HOH HOH . M 5 HOH A 89 689 196 HOH HOH . N 5 HOH B 1 601 1 HOH HOH . N 5 HOH B 2 602 4 HOH HOH . N 5 HOH B 3 603 47 HOH HOH . N 5 HOH B 4 604 3 HOH HOH . N 5 HOH B 5 605 146 HOH HOH . N 5 HOH B 6 606 8 HOH HOH . N 5 HOH B 7 607 182 HOH HOH . N 5 HOH B 8 608 164 HOH HOH . N 5 HOH B 9 609 59 HOH HOH . N 5 HOH B 10 610 98 HOH HOH . N 5 HOH B 11 611 64 HOH HOH . N 5 HOH B 12 612 202 HOH HOH . N 5 HOH B 13 613 95 HOH HOH . N 5 HOH B 14 614 114 HOH HOH . N 5 HOH B 15 615 19 HOH HOH . N 5 HOH B 16 616 21 HOH HOH . N 5 HOH B 17 617 62 HOH HOH . N 5 HOH B 18 618 30 HOH HOH . N 5 HOH B 19 619 187 HOH HOH . N 5 HOH B 20 620 92 HOH HOH . N 5 HOH B 21 621 31 HOH HOH . N 5 HOH B 22 622 116 HOH HOH . N 5 HOH B 23 623 6 HOH HOH . N 5 HOH B 24 624 40 HOH HOH . N 5 HOH B 25 625 168 HOH HOH . N 5 HOH B 26 626 25 HOH HOH . N 5 HOH B 27 627 140 HOH HOH . N 5 HOH B 28 628 86 HOH HOH . N 5 HOH B 29 629 2 HOH HOH . N 5 HOH B 30 630 5 HOH HOH . N 5 HOH B 31 631 77 HOH HOH . N 5 HOH B 32 632 65 HOH HOH . N 5 HOH B 33 633 105 HOH HOH . N 5 HOH B 34 634 18 HOH HOH . N 5 HOH B 35 635 17 HOH HOH . N 5 HOH B 36 636 217 HOH HOH . N 5 HOH B 37 637 200 HOH HOH . N 5 HOH B 38 638 83 HOH HOH . N 5 HOH B 39 639 63 HOH HOH . N 5 HOH B 40 640 148 HOH HOH . N 5 HOH B 41 641 165 HOH HOH . N 5 HOH B 42 642 224 HOH HOH . N 5 HOH B 43 643 107 HOH HOH . N 5 HOH B 44 644 110 HOH HOH . N 5 HOH B 45 645 205 HOH HOH . N 5 HOH B 46 646 23 HOH HOH . N 5 HOH B 47 647 207 HOH HOH . N 5 HOH B 48 648 76 HOH HOH . N 5 HOH B 49 649 141 HOH HOH . N 5 HOH B 50 650 171 HOH HOH . N 5 HOH B 51 651 84 HOH HOH . N 5 HOH B 52 652 22 HOH HOH . N 5 HOH B 53 653 97 HOH HOH . N 5 HOH B 54 654 90 HOH HOH . N 5 HOH B 55 655 193 HOH HOH . N 5 HOH B 56 656 149 HOH HOH . N 5 HOH B 57 657 38 HOH HOH . N 5 HOH B 58 658 37 HOH HOH . N 5 HOH B 59 659 222 HOH HOH . N 5 HOH B 60 660 70 HOH HOH . N 5 HOH B 61 661 74 HOH HOH . N 5 HOH B 62 662 34 HOH HOH . N 5 HOH B 63 663 216 HOH HOH . N 5 HOH B 64 664 172 HOH HOH . N 5 HOH B 65 665 206 HOH HOH . N 5 HOH B 66 666 147 HOH HOH . N 5 HOH B 67 667 167 HOH HOH . N 5 HOH B 68 668 61 HOH HOH . N 5 HOH B 69 669 53 HOH HOH . N 5 HOH B 70 670 96 HOH HOH . N 5 HOH B 71 671 142 HOH HOH . N 5 HOH B 72 672 210 HOH HOH . N 5 HOH B 73 673 183 HOH HOH . N 5 HOH B 74 674 174 HOH HOH . N 5 HOH B 75 675 7 HOH HOH . N 5 HOH B 76 676 24 HOH HOH . N 5 HOH B 77 677 204 HOH HOH . N 5 HOH B 78 678 73 HOH HOH . N 5 HOH B 79 679 188 HOH HOH . N 5 HOH B 80 680 152 HOH HOH . N 5 HOH B 81 681 185 HOH HOH . N 5 HOH B 82 682 75 HOH HOH . N 5 HOH B 83 683 66 HOH HOH . N 5 HOH B 84 684 192 HOH HOH . N 5 HOH B 85 685 195 HOH HOH . N 5 HOH B 86 686 203 HOH HOH . N 5 HOH B 87 687 208 HOH HOH . N 5 HOH B 88 688 225 HOH HOH . N 5 HOH B 89 689 223 HOH HOH . N 5 HOH B 90 690 184 HOH HOH . N 5 HOH B 91 691 106 HOH HOH . N 5 HOH B 92 692 48 HOH HOH . N 5 HOH B 93 693 91 HOH HOH . N 5 HOH B 94 694 180 HOH HOH . N 5 HOH B 95 695 209 HOH HOH . N 5 HOH B 96 696 85 HOH HOH . N 5 HOH B 97 697 179 HOH HOH . N 5 HOH B 98 698 151 HOH HOH . N 5 HOH B 99 699 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AOJ . . . D 3 111.368 -4.005 154.946 1 111.85 ? N1 AOJ 502 A 1 HETATM 2 C C4 AOJ . . . D 3 111.156 -3.6 153.697 1 111.1 ? C4 AOJ 502 A 1 HETATM 3 C C5 AOJ . . . D 3 112.049 -4.71 150.297 1 111.83 ? C5 AOJ 502 A 1 HETATM 4 C C6 AOJ . . . D 3 114.042 -3.683 150.199 1 111.54 ? C6 AOJ 502 A 1 HETATM 5 C C7 AOJ . . . D 3 115.251 -3.102 149.858 1 111.58 ? C7 AOJ 502 A 1 HETATM 6 C C8 AOJ . . . D 3 116.066 -2.554 150.849 1 112.07 ? C8 AOJ 502 A 1 HETATM 7 C C10 AOJ . . . D 3 114.496 -3.157 152.603 1 112.16 ? C10 AOJ 502 A 1 HETATM 8 F F1 AOJ . . . D 3 116.525 -2.044 153.106 1 111.81 ? F1 AOJ 502 A 1 HETATM 9 C C11 AOJ . . . D 3 115.698 -2.579 152.196 1 112.06 ? C11 AOJ 502 A 1 HETATM 10 C C9 AOJ . . . D 3 113.671 -3.693 151.63 1 112.01 ? C9 AOJ 502 A 1 HETATM 11 N N2 AOJ . . . D 3 113.061 -4.284 149.485 1 111.47 ? N2 AOJ 502 A 1 HETATM 12 C C12 AOJ . . . D 3 112.368 -4.368 151.596 1 111.66 ? C12 AOJ 502 A 1 HETATM 13 C C1 AOJ . . . D 3 111.478 -4.708 152.736 1 111.05 ? C1 AOJ 502 A 1 HETATM 14 O O2 AOJ . . . D 3 110.724 -2.513 153.353 1 109.74 ? O2 AOJ 502 A 1 HETATM 15 C C3 AOJ . . . D 3 111.828 -5.249 155.023 1 110.96 ? C3 AOJ 502 A 1 HETATM 16 O O1 AOJ . . . D 3 112.021 -5.886 156.044 1 109.9 ? O1 AOJ 502 A 1 HETATM 17 C C2 AOJ . . . D 3 112.077 -5.79 153.642 1 110.64 ? C2 AOJ 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #