data_6PZ1
#
_model_server_result.job_id            -EIfDyV0jUkXOXFMGRftnA 
_model_server_result.datetime_utc      '2024-12-01 19:16:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    6PZ1 
#
_exptl.entry_id    6PZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PZ1 
_cell.length_a            87.479 
_cell.length_b            97.858 
_cell.length_c            131.966 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,M 1 1 
B,F,G,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 B NE2 HIS 336 B HIS 346 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 157 n n 
C1 C2 GOL sing 158 n n 
C1 H11 GOL sing 159 n n 
C1 H12 GOL sing 160 n n 
O1 HO1 GOL sing 161 n n 
C2 O2 GOL sing 162 n n 
C2 C3 GOL sing 163 n n 
C2 H2 GOL sing 164 n n 
O2 HO2 GOL sing 165 n n 
C3 O3 GOL sing 166 n n 
C3 H31 GOL sing 167 n n 
C3 H32 GOL sing 168 n n 
O3 HO3 GOL sing 169 n n 
#
_atom_sites.entry_id                     6PZ1 
_atom_sites.fract_transf_matrix[1][1]    0.011431 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 1 HEM HEM . 
D 3 AOJ A 1 502 2 AOJ IPD . 
E 4 GOL A 1 503 1 GOL GOL . 
F 2 HEM B 1 501 2 HEM HEM . 
G 3 AOJ B 1 502 1 AOJ IPD . 
H 3 AOJ B 1 503 3 AOJ IPD . 
I 4 GOL B 1 504 3 GOL GOL . 
J 4 GOL B 1 505 4 GOL GOL . 
K 4 GOL B 1 506 5 GOL GOL . 
L 4 GOL B 1 507 17 GOL GOL . 
M 5 HOH A 1 601 14 HOH HOH . 
M 5 HOH A 2 602 41 HOH HOH . 
M 5 HOH A 3 603 71 HOH HOH . 
M 5 HOH A 4 604 10 HOH HOH . 
M 5 HOH A 5 605 46 HOH HOH . 
M 5 HOH A 6 606 13 HOH HOH . 
M 5 HOH A 7 607 27 HOH HOH . 
M 5 HOH A 8 608 228 HOH HOH . 
M 5 HOH A 9 609 26 HOH HOH . 
M 5 HOH A 10 610 131 HOH HOH . 
M 5 HOH A 11 611 11 HOH HOH . 
M 5 HOH A 12 612 163 HOH HOH . 
M 5 HOH A 13 613 189 HOH HOH . 
M 5 HOH A 14 614 123 HOH HOH . 
M 5 HOH A 15 615 51 HOH HOH . 
M 5 HOH A 16 616 89 HOH HOH . 
M 5 HOH A 17 617 87 HOH HOH . 
M 5 HOH A 18 618 12 HOH HOH . 
M 5 HOH A 19 619 102 HOH HOH . 
M 5 HOH A 20 620 80 HOH HOH . 
M 5 HOH A 21 621 100 HOH HOH . 
M 5 HOH A 22 622 198 HOH HOH . 
M 5 HOH A 23 623 161 HOH HOH . 
M 5 HOH A 24 624 69 HOH HOH . 
M 5 HOH A 25 625 218 HOH HOH . 
M 5 HOH A 26 626 144 HOH HOH . 
M 5 HOH A 27 627 154 HOH HOH . 
M 5 HOH A 28 628 32 HOH HOH . 
M 5 HOH A 29 629 28 HOH HOH . 
M 5 HOH A 30 630 29 HOH HOH . 
M 5 HOH A 31 631 45 HOH HOH . 
M 5 HOH A 32 632 42 HOH HOH . 
M 5 HOH A 33 633 197 HOH HOH . 
M 5 HOH A 34 634 138 HOH HOH . 
M 5 HOH A 35 635 88 HOH HOH . 
M 5 HOH A 36 636 9 HOH HOH . 
M 5 HOH A 37 637 158 HOH HOH . 
M 5 HOH A 38 638 153 HOH HOH . 
M 5 HOH A 39 639 15 HOH HOH . 
M 5 HOH A 40 640 129 HOH HOH . 
M 5 HOH A 41 641 143 HOH HOH . 
M 5 HOH A 42 642 81 HOH HOH . 
M 5 HOH A 43 643 190 HOH HOH . 
M 5 HOH A 44 644 54 HOH HOH . 
M 5 HOH A 45 645 156 HOH HOH . 
M 5 HOH A 46 646 118 HOH HOH . 
M 5 HOH A 47 647 122 HOH HOH . 
M 5 HOH A 48 648 101 HOH HOH . 
M 5 HOH A 49 649 220 HOH HOH . 
M 5 HOH A 50 650 120 HOH HOH . 
M 5 HOH A 51 651 137 HOH HOH . 
M 5 HOH A 52 652 177 HOH HOH . 
M 5 HOH A 53 653 113 HOH HOH . 
M 5 HOH A 54 654 128 HOH HOH . 
M 5 HOH A 55 655 104 HOH HOH . 
M 5 HOH A 56 656 125 HOH HOH . 
M 5 HOH A 57 657 219 HOH HOH . 
M 5 HOH A 58 658 136 HOH HOH . 
M 5 HOH A 59 659 55 HOH HOH . 
M 5 HOH A 60 660 127 HOH HOH . 
M 5 HOH A 61 661 178 HOH HOH . 
M 5 HOH A 62 662 115 HOH HOH . 
M 5 HOH A 63 663 211 HOH HOH . 
M 5 HOH A 64 664 67 HOH HOH . 
M 5 HOH A 65 665 33 HOH HOH . 
M 5 HOH A 66 666 199 HOH HOH . 
M 5 HOH A 67 667 112 HOH HOH . 
M 5 HOH A 68 668 121 HOH HOH . 
M 5 HOH A 69 669 68 HOH HOH . 
M 5 HOH A 70 670 36 HOH HOH . 
M 5 HOH A 71 671 58 HOH HOH . 
M 5 HOH A 72 672 130 HOH HOH . 
M 5 HOH A 73 673 117 HOH HOH . 
M 5 HOH A 74 674 213 HOH HOH . 
M 5 HOH A 75 675 78 HOH HOH . 
M 5 HOH A 76 676 57 HOH HOH . 
M 5 HOH A 77 677 175 HOH HOH . 
M 5 HOH A 78 678 201 HOH HOH . 
M 5 HOH A 79 679 132 HOH HOH . 
M 5 HOH A 80 680 44 HOH HOH . 
M 5 HOH A 81 681 43 HOH HOH . 
M 5 HOH A 82 682 103 HOH HOH . 
M 5 HOH A 83 683 212 HOH HOH . 
M 5 HOH A 84 684 186 HOH HOH . 
M 5 HOH A 85 685 124 HOH HOH . 
M 5 HOH A 86 686 135 HOH HOH . 
M 5 HOH A 87 687 16 HOH HOH . 
M 5 HOH A 88 688 155 HOH HOH . 
M 5 HOH A 89 689 196 HOH HOH . 
N 5 HOH B 1 601 1 HOH HOH . 
N 5 HOH B 2 602 4 HOH HOH . 
N 5 HOH B 3 603 47 HOH HOH . 
N 5 HOH B 4 604 3 HOH HOH . 
N 5 HOH B 5 605 146 HOH HOH . 
N 5 HOH B 6 606 8 HOH HOH . 
N 5 HOH B 7 607 182 HOH HOH . 
N 5 HOH B 8 608 164 HOH HOH . 
N 5 HOH B 9 609 59 HOH HOH . 
N 5 HOH B 10 610 98 HOH HOH . 
N 5 HOH B 11 611 64 HOH HOH . 
N 5 HOH B 12 612 202 HOH HOH . 
N 5 HOH B 13 613 95 HOH HOH . 
N 5 HOH B 14 614 114 HOH HOH . 
N 5 HOH B 15 615 19 HOH HOH . 
N 5 HOH B 16 616 21 HOH HOH . 
N 5 HOH B 17 617 62 HOH HOH . 
N 5 HOH B 18 618 30 HOH HOH . 
N 5 HOH B 19 619 187 HOH HOH . 
N 5 HOH B 20 620 92 HOH HOH . 
N 5 HOH B 21 621 31 HOH HOH . 
N 5 HOH B 22 622 116 HOH HOH . 
N 5 HOH B 23 623 6 HOH HOH . 
N 5 HOH B 24 624 40 HOH HOH . 
N 5 HOH B 25 625 168 HOH HOH . 
N 5 HOH B 26 626 25 HOH HOH . 
N 5 HOH B 27 627 140 HOH HOH . 
N 5 HOH B 28 628 86 HOH HOH . 
N 5 HOH B 29 629 2 HOH HOH . 
N 5 HOH B 30 630 5 HOH HOH . 
N 5 HOH B 31 631 77 HOH HOH . 
N 5 HOH B 32 632 65 HOH HOH . 
N 5 HOH B 33 633 105 HOH HOH . 
N 5 HOH B 34 634 18 HOH HOH . 
N 5 HOH B 35 635 17 HOH HOH . 
N 5 HOH B 36 636 217 HOH HOH . 
N 5 HOH B 37 637 200 HOH HOH . 
N 5 HOH B 38 638 83 HOH HOH . 
N 5 HOH B 39 639 63 HOH HOH . 
N 5 HOH B 40 640 148 HOH HOH . 
N 5 HOH B 41 641 165 HOH HOH . 
N 5 HOH B 42 642 224 HOH HOH . 
N 5 HOH B 43 643 107 HOH HOH . 
N 5 HOH B 44 644 110 HOH HOH . 
N 5 HOH B 45 645 205 HOH HOH . 
N 5 HOH B 46 646 23 HOH HOH . 
N 5 HOH B 47 647 207 HOH HOH . 
N 5 HOH B 48 648 76 HOH HOH . 
N 5 HOH B 49 649 141 HOH HOH . 
N 5 HOH B 50 650 171 HOH HOH . 
N 5 HOH B 51 651 84 HOH HOH . 
N 5 HOH B 52 652 22 HOH HOH . 
N 5 HOH B 53 653 97 HOH HOH . 
N 5 HOH B 54 654 90 HOH HOH . 
N 5 HOH B 55 655 193 HOH HOH . 
N 5 HOH B 56 656 149 HOH HOH . 
N 5 HOH B 57 657 38 HOH HOH . 
N 5 HOH B 58 658 37 HOH HOH . 
N 5 HOH B 59 659 222 HOH HOH . 
N 5 HOH B 60 660 70 HOH HOH . 
N 5 HOH B 61 661 74 HOH HOH . 
N 5 HOH B 62 662 34 HOH HOH . 
N 5 HOH B 63 663 216 HOH HOH . 
N 5 HOH B 64 664 172 HOH HOH . 
N 5 HOH B 65 665 206 HOH HOH . 
N 5 HOH B 66 666 147 HOH HOH . 
N 5 HOH B 67 667 167 HOH HOH . 
N 5 HOH B 68 668 61 HOH HOH . 
N 5 HOH B 69 669 53 HOH HOH . 
N 5 HOH B 70 670 96 HOH HOH . 
N 5 HOH B 71 671 142 HOH HOH . 
N 5 HOH B 72 672 210 HOH HOH . 
N 5 HOH B 73 673 183 HOH HOH . 
N 5 HOH B 74 674 174 HOH HOH . 
N 5 HOH B 75 675 7 HOH HOH . 
N 5 HOH B 76 676 24 HOH HOH . 
N 5 HOH B 77 677 204 HOH HOH . 
N 5 HOH B 78 678 73 HOH HOH . 
N 5 HOH B 79 679 188 HOH HOH . 
N 5 HOH B 80 680 152 HOH HOH . 
N 5 HOH B 81 681 185 HOH HOH . 
N 5 HOH B 82 682 75 HOH HOH . 
N 5 HOH B 83 683 66 HOH HOH . 
N 5 HOH B 84 684 192 HOH HOH . 
N 5 HOH B 85 685 195 HOH HOH . 
N 5 HOH B 86 686 203 HOH HOH . 
N 5 HOH B 87 687 208 HOH HOH . 
N 5 HOH B 88 688 225 HOH HOH . 
N 5 HOH B 89 689 223 HOH HOH . 
N 5 HOH B 90 690 184 HOH HOH . 
N 5 HOH B 91 691 106 HOH HOH . 
N 5 HOH B 92 692 48 HOH HOH . 
N 5 HOH B 93 693 91 HOH HOH . 
N 5 HOH B 94 694 180 HOH HOH . 
N 5 HOH B 95 695 209 HOH HOH . 
N 5 HOH B 96 696 85 HOH HOH . 
N 5 HOH B 97 697 179 HOH HOH . 
N 5 HOH B 98 698 151 HOH HOH . 
N 5 HOH B 99 699 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 96.621 5.849 159.206 1 103.7 ? C1 GOL 503 A 1 
HETATM 2 O O1 GOL . . . E 4 97.015 5.906 157.838 1 102.67 ? O1 GOL 503 A 1 
HETATM 3 C C2 GOL . . . E 4 96.153 4.465 159.604 1 103.52 ? C2 GOL 503 A 1 
HETATM 4 O O2 GOL . . . E 4 94.863 4.548 160.208 1 103.65 ? O2 GOL 503 A 1 
HETATM 5 C C3 GOL . . . E 4 97.105 3.752 160.543 1 102.97 ? C3 GOL 503 A 1 
HETATM 6 O O3 GOL . . . E 4 97.442 4.552 161.674 1 101.99 ? O3 GOL 503 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#