data_6PZ9
#
_model_server_result.job_id            T8PBaHEeE-B5q4omKazwwQ 
_model_server_result.datetime_utc      '2024-11-23 11:19:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6pz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1602}' 
#
_entry.id    6PZ9 
#
_exptl.entry_id    6PZ9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6PZ9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6PZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6PZ9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BJX C 1 1601 1601 BJX RPG . 
D 4 ATP C 1 1602 2 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 4 232.9 131.284 159.858 1 127.48 0 PG ATP 1602 C 1 
HETATM 2 O O1G ATP . . . D 4 233.153 129.868 159.421 1 127.48 -1 O1G ATP 1602 C 1 
HETATM 3 O O2G ATP . . . D 4 231.705 131.956 159.234 1 127.48 -1 O2G ATP 1602 C 1 
HETATM 4 O O3G ATP . . . D 4 233.081 131.462 161.344 1 127.48 0 O3G ATP 1602 C 1 
HETATM 5 P PB ATP . . . D 4 234.706 131.803 157.803 1 127.48 0 PB ATP 1602 C 1 
HETATM 6 O O1B ATP . . . D 4 234.442 130.367 157.456 1 127.48 -1 O1B ATP 1602 C 1 
HETATM 7 O O2B ATP . . . D 4 234.324 132.9 156.85 1 127.48 0 O2B ATP 1602 C 1 
HETATM 8 O O3B ATP . . . D 4 234.14 132.109 159.267 1 127.48 0 O3B ATP 1602 C 1 
HETATM 9 P PA ATP . . . D 4 236.806 131.05 159.354 1 127.48 0 PA ATP 1602 C 1 
HETATM 10 O O1A ATP . . . D 4 238.208 130.679 158.982 1 127.48 -1 O1A ATP 1602 C 1 
HETATM 11 O O2A ATP . . . D 4 235.836 129.939 159.647 1 127.48 0 O2A ATP 1602 C 1 
HETATM 12 O O3A ATP . . . D 4 236.244 131.971 158.171 1 127.48 0 O3A ATP 1602 C 1 
HETATM 13 O O5' ATP . . . D 4 236.762 131.986 160.659 1 127.48 0 O5' ATP 1602 C 1 
HETATM 14 C C5' ATP . . . D 4 237.728 131.925 161.707 1 127.48 0 C5' ATP 1602 C 1 
HETATM 15 C C4' ATP . . . D 4 238.029 130.511 162.184 1 127.48 0 C4' ATP 1602 C 1 
HETATM 16 O O4' ATP . . . D 4 239.008 130.581 163.219 1 127.48 0 O4' ATP 1602 C 1 
HETATM 17 C C3' ATP . . . D 4 236.826 129.777 162.741 1 127.48 0 C3' ATP 1602 C 1 
HETATM 18 O O3' ATP . . . D 4 236.58 128.641 161.912 1 127.48 0 O3' ATP 1602 C 1 
HETATM 19 C C2' ATP . . . D 4 237.197 129.328 164.128 1 127.48 0 C2' ATP 1602 C 1 
HETATM 20 O O2' ATP . . . D 4 237.308 127.905 164.112 1 127.48 0 O2' ATP 1602 C 1 
HETATM 21 C C1' ATP . . . D 4 238.559 129.923 164.4 1 127.48 0 C1' ATP 1602 C 1 
HETATM 22 N N9 ATP . . . D 4 238.393 130.925 165.469 1 127.48 0 N9 ATP 1602 C 1 
HETATM 23 C C8 ATP . . . D 4 237.511 131.937 165.492 1 127.48 0 C8 ATP 1602 C 1 
HETATM 24 N N7 ATP . . . D 4 237.632 132.672 166.623 1 127.48 0 N7 ATP 1602 C 1 
HETATM 25 C C5 ATP . . . D 4 238.615 132.114 167.336 1 127.48 0 C5 ATP 1602 C 1 
HETATM 26 C C6 ATP . . . D 4 239.268 132.374 168.625 1 127.48 0 C6 ATP 1602 C 1 
HETATM 27 N N6 ATP . . . D 4 238.881 133.403 169.406 1 127.48 0 N6 ATP 1602 C 1 
HETATM 28 N N1 ATP . . . D 4 240.259 131.542 168.999 1 127.48 0 N1 ATP 1602 C 1 
HETATM 29 C C2 ATP . . . D 4 240.656 130.508 168.239 1 127.48 0 C2 ATP 1602 C 1 
HETATM 30 N N3 ATP . . . D 4 240.113 130.218 167.054 1 127.48 0 N3 ATP 1602 C 1 
HETATM 31 C C4 ATP . . . D 4 239.113 130.972 166.569 1 127.48 0 C4 ATP 1602 C 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#