data_6Q0C # _model_server_result.job_id j7Z-KQo509da0h90Ii-kOw _model_server_result.datetime_utc '2025-01-18 23:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6Q0C # _exptl.entry_id 6Q0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q0C _cell.length_a 37.86 _cell.length_b 86.14 _cell.length_c 141.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DA 6 C DA 17 1_555 C P NR1 7 C NR1 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 C O3' NR1 7 C NR1 18 1_555 C P DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? metalc ? metalc1 A O SER 118 A SER 118 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 A OG SER 118 A SER 118 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc3 A O VAL 123 A VAL 123 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 A SG CYS 198 A CYS 198 1_555 D FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 A SG CYS 205 A CYS 205 1_555 D FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 A SG CYS 208 A CYS 208 1_555 D FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc7 A SG CYS 214 A CYS 214 1_555 D FE4 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc8 E CA CA . A CA 402 1_555 G O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc9 E CA CA . A CA 402 1_555 G O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 E CA CA . A CA 402 1_555 G O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? hydrog WATSON-CRICK hydrog1 B N1 DA 2 B DA 2 1_555 C N3 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 2 B DA 2 1_555 C O4 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 3 B DG 3 1_555 C N3 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 3 B DG 3 1_555 C O2 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 3 B DG 3 1_555 C N4 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 4 B DA 4 1_555 C N3 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 4 B DA 4 1_555 C O4 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 5 B DC 5 1_555 C N1 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 5 B DC 5 1_555 C O6 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 5 B DC 5 1_555 C N2 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DT 7 B DT 7 1_555 C N1 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O4 DT 7 B DT 7 1_555 C N6 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 8 B DG 8 1_555 C N3 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 8 B DG 8 1_555 C O2 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 8 B DG 8 1_555 C N4 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N1 DG 9 B DG 9 1_555 C N3 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N2 DG 9 B DG 9 1_555 C O2 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O6 DG 9 B DG 9 1_555 C N4 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 10 B DA 10 1_555 C N3 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 10 B DA 10 1_555 C O4 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DC 11 B DC 11 1_555 C N1 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 DC 11 B DC 11 1_555 C O6 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 DC 11 B DC 11 1_555 C N2 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 473 n n FE1 S3 SF4 sing 474 n n FE1 S4 SF4 sing 475 n n FE2 S1 SF4 sing 476 n n FE2 S3 SF4 sing 477 n n FE2 S4 SF4 sing 478 n n FE3 S1 SF4 sing 479 n n FE3 S2 SF4 sing 480 n n FE3 S4 SF4 sing 481 n n FE4 S1 SF4 sing 482 n n FE4 S2 SF4 sing 483 n n FE4 S3 SF4 sing 484 n n # _atom_sites.entry_id 6Q0C _atom_sites.fract_transf_matrix[1][1] 0.026413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SF4 A 1 401 401 SF4 SF4 . E 5 CA A 1 402 1 CA CA . F 6 EDO A 1 403 1 EDO EDO . G 7 HOH A 1 501 27 HOH HOH . G 7 HOH A 2 502 91 HOH HOH . G 7 HOH A 3 503 59 HOH HOH . G 7 HOH A 4 504 24 HOH HOH . G 7 HOH A 5 505 28 HOH HOH . G 7 HOH A 6 506 11 HOH HOH . G 7 HOH A 7 507 15 HOH HOH . G 7 HOH A 8 508 57 HOH HOH . G 7 HOH A 9 509 74 HOH HOH . G 7 HOH A 10 510 87 HOH HOH . G 7 HOH A 11 511 18 HOH HOH . G 7 HOH A 12 512 82 HOH HOH . G 7 HOH A 13 513 84 HOH HOH . G 7 HOH A 14 514 3 HOH HOH . G 7 HOH A 15 515 37 HOH HOH . G 7 HOH A 16 516 6 HOH HOH . G 7 HOH A 17 517 17 HOH HOH . G 7 HOH A 18 518 112 HOH HOH . G 7 HOH A 19 519 10 HOH HOH . G 7 HOH A 20 520 7 HOH HOH . G 7 HOH A 21 521 104 HOH HOH . G 7 HOH A 22 522 90 HOH HOH . G 7 HOH A 23 523 2 HOH HOH . G 7 HOH A 24 524 116 HOH HOH . G 7 HOH A 25 525 92 HOH HOH . G 7 HOH A 26 526 21 HOH HOH . G 7 HOH A 27 527 119 HOH HOH . G 7 HOH A 28 528 80 HOH HOH . G 7 HOH A 29 529 44 HOH HOH . G 7 HOH A 30 530 115 HOH HOH . G 7 HOH A 31 531 14 HOH HOH . G 7 HOH A 32 532 66 HOH HOH . G 7 HOH A 33 533 93 HOH HOH . G 7 HOH A 34 534 88 HOH HOH . G 7 HOH A 35 535 19 HOH HOH . G 7 HOH A 36 536 43 HOH HOH . G 7 HOH A 37 537 97 HOH HOH . G 7 HOH A 38 538 55 HOH HOH . G 7 HOH A 39 539 83 HOH HOH . G 7 HOH A 40 540 26 HOH HOH . G 7 HOH A 41 541 105 HOH HOH . G 7 HOH A 42 542 86 HOH HOH . G 7 HOH A 43 543 120 HOH HOH . G 7 HOH A 44 544 38 HOH HOH . G 7 HOH A 45 545 89 HOH HOH . G 7 HOH A 46 546 85 HOH HOH . G 7 HOH A 47 547 1 HOH HOH . G 7 HOH A 48 548 99 HOH HOH . G 7 HOH A 49 549 77 HOH HOH . G 7 HOH A 50 550 52 HOH HOH . G 7 HOH A 51 551 54 HOH HOH . G 7 HOH A 52 552 48 HOH HOH . G 7 HOH A 53 553 70 HOH HOH . G 7 HOH A 54 554 42 HOH HOH . G 7 HOH A 55 555 13 HOH HOH . G 7 HOH A 56 556 117 HOH HOH . H 7 HOH B 1 101 114 HOH HOH . H 7 HOH B 2 102 41 HOH HOH . H 7 HOH B 3 103 100 HOH HOH . H 7 HOH B 4 104 47 HOH HOH . H 7 HOH B 5 105 62 HOH HOH . H 7 HOH B 6 106 107 HOH HOH . H 7 HOH B 7 107 118 HOH HOH . I 7 HOH C 1 101 9 HOH HOH . I 7 HOH C 2 102 5 HOH HOH . I 7 HOH C 3 103 63 HOH HOH . I 7 HOH C 4 104 50 HOH HOH . I 7 HOH C 5 105 23 HOH HOH . I 7 HOH C 6 106 64 HOH HOH . I 7 HOH C 7 107 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 4 8.231 -14.124 -2.587 1 49.12 ? FE1 SF4 401 A 1 HETATM 2 FE FE2 SF4 . . . D 4 8.908 -16.404 -1.242 1 47.46 ? FE2 SF4 401 A 1 HETATM 3 FE FE3 SF4 . . . D 4 10.24 -14.062 -0.729 1 45.52 ? FE3 SF4 401 A 1 HETATM 4 FE FE4 SF4 . . . D 4 10.623 -15.355 -3.096 1 47.05 ? FE4 SF4 401 A 1 HETATM 5 S S1 SF4 . . . D 4 11.164 -16.125 -1.028 1 42.25 ? S1 SF4 401 A 1 HETATM 6 S S2 SF4 . . . D 4 10.268 -13.124 -2.798 1 40.47 ? S2 SF4 401 A 1 HETATM 7 S S3 SF4 . . . D 4 8.534 -16.197 -3.475 1 50.81 ? S3 SF4 401 A 1 HETATM 8 S S4 SF4 . . . D 4 8.029 -14.499 -0.345 1 42.3 ? S4 SF4 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #