data_6Q0H # _model_server_result.job_id BK7YGLuO3jYuDdjuQzjitA _model_server_result.datetime_utc '2024-12-25 19:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6Q0H # _exptl.entry_id 6Q0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q0H _cell.length_a 52.81 _cell.length_b 70.58 _cell.length_c 200.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 59 1_555 A SG CYS 20 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 43 A CYS 94 1_555 A SG CYS 88 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 103 H CYS 103 1_555 B SG CYS 108 H CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 157 H CYS 157 1_555 B SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 24 L CYS 22 1_555 C SG CYS 89 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 139 L CYS 137 1_555 C SG CYS 198 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 78 A ASN 129 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 313 n n C1 O1 NAG sing 314 n n C1 O5 NAG sing 315 n n C1 H1 NAG sing 316 n n C2 C3 NAG sing 317 n n C2 N2 NAG sing 318 n n C2 H2 NAG sing 319 n n C3 C4 NAG sing 320 n n C3 O3 NAG sing 321 n n C3 H3 NAG sing 322 n n C4 C5 NAG sing 323 n n C4 O4 NAG sing 324 n n C4 H4 NAG sing 325 n n C5 C6 NAG sing 326 n n C5 O5 NAG sing 327 n n C5 H5 NAG sing 328 n n C6 O6 NAG sing 329 n n C6 H61 NAG sing 330 n n C6 H62 NAG sing 331 n n C7 C8 NAG sing 332 n n C7 N2 NAG sing 333 n n C7 O7 NAG doub 334 n n C8 H81 NAG sing 335 n n C8 H82 NAG sing 336 n n C8 H83 NAG sing 337 n n N2 HN2 NAG sing 338 n n O1 HO1 NAG sing 339 n n O3 HO3 NAG sing 340 n n O4 HO4 NAG sing 341 n n O6 HO6 NAG sing 342 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6Q0H _atom_sites.fract_transf_matrix[1][1] 0.018936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 264 NAG NAG . E 5 PG4 A 1 302 301 PG4 1PE . F 6 2PE L 1 301 301 2PE 2PE . G 7 GOL L 1 302 501 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 3.428 -8.302 105.426 1 135.48 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . D 4 4.581 -7.488 104.832 1 136.44 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . D 4 5.822 -8.372 104.691 1 135.52 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . D 4 6.178 -8.995 106.032 1 136.35 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . D 4 4.979 -9.755 106.592 1 135.07 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . D 4 5.22 -10.272 107.991 1 135.05 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . D 4 3.966 -7.589 102.454 1 138 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . D 4 3.638 -6.787 101.232 1 137.34 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . D 4 4.232 -6.886 103.564 1 136.21 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . D 4 6.913 -7.592 104.211 1 136.6 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . D 4 7.275 -9.889 105.885 1 136.23 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . D 4 3.833 -8.892 106.673 1 134.93 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . D 4 4.233 -11.219 108.376 1 135.2 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . D 4 3.981 -8.817 102.445 1 138.03 ? O7 NAG 301 A 1 HETATM 15 H H1 NAG . . . D 4 3.183 -9.012 104.802 1 162.68 ? H1 NAG 301 A 1 HETATM 16 H H2 NAG . . . D 4 4.785 -6.763 105.452 1 163.83 ? H2 NAG 301 A 1 HETATM 17 H H3 NAG . . . D 4 5.636 -9.082 104.048 1 162.73 ? H3 NAG 301 A 1 HETATM 18 H H4 NAG . . . D 4 6.428 -8.287 106.655 1 163.72 ? H4 NAG 301 A 1 HETATM 19 H H5 NAG . . . D 4 4.772 -10.5 105.996 1 162.19 ? H5 NAG 301 A 1 HETATM 20 H H61 NAG . . . D 4 6.098 -10.696 108.027 1 162.16 ? H61 NAG 301 A 1 HETATM 21 H H62 NAG . . . D 4 5.202 -9.522 108.615 1 162.16 ? H62 NAG 301 A 1 HETATM 22 H H81 NAG . . . D 4 4.036 -5.898 101.31 1 164.91 ? H81 NAG 301 A 1 HETATM 23 H H82 NAG . . . D 4 2.67 -6.703 101.148 1 164.91 ? H82 NAG 301 A 1 HETATM 24 H H83 NAG . . . D 4 3.996 -7.235 100.443 1 164.91 ? H83 NAG 301 A 1 HETATM 25 H HN2 NAG . . . D 4 4.19 -5.976 103.517 1 163.56 ? HN2 NAG 301 A 1 HETATM 26 H HO3 NAG . . . D 4 7.416 -8.086 103.672 1 164.03 ? HO3 NAG 301 A 1 HETATM 27 H HO4 NAG . . . D 4 7.956 -9.607 106.379 1 163.58 ? HO4 NAG 301 A 1 HETATM 28 H HO6 NAG . . . D 4 4.519 -11.673 109.083 1 162.34 ? HO6 NAG 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #