data_6Q17 # _model_server_result.job_id Oj2UPn_GdtPpFWOxVSazQA _model_server_result.datetime_utc '2024-11-22 00:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6Q17 # _exptl.entry_id 6Q17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.399 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'methyl 3-O-[(1-beta-D-galactopyranosyl-1H-1,2,3-triazol-4-yl)methyl]-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q17 _cell.length_a 35.74 _cell.length_b 57.82 _cell.length_c 62.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H27 N3 O11' _chem_comp.formula_weight 437.399 _chem_comp.id P8J _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 3-O-[(1-beta-D-galactopyranosyl-1H-1,2,3-triazol-4-yl)methyl]-beta-D-galactopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 O11 P8J sing 237 n n O7 C10 P8J sing 238 n n O11 C12 P8J sing 239 n n O8 C12 P8J sing 240 n n O8 C11 P8J sing 241 n n C10 C11 P8J sing 242 n n C12 C13 P8J sing 243 n n C11 C15 P8J sing 244 n n C13 O9 P8J sing 245 n n C13 C14 P8J sing 246 n n O5 C9 P8J sing 247 n n C15 O10 P8J sing 248 n n C15 C14 P8J sing 249 n n C14 O6 P8J sing 250 n n C4 O1 P8J sing 251 n n C4 C5 P8J sing 252 n n C9 C5 P8J sing 253 n n C9 C8 P8J sing 254 n n O2 C5 P8J sing 255 n n O2 C6 P8J sing 256 n n N2 N3 P8J doub 257 n y N2 N1 P8J sing 258 n y N3 C1 P8J sing 259 n y O6 C3 P8J sing 260 n n O4 C8 P8J sing 261 n n C7 C8 P8J sing 262 n n C7 C6 P8J sing 263 n n C7 O3 P8J sing 264 n n N1 C6 P8J sing 265 n n N1 C2 P8J sing 266 n y C1 C3 P8J sing 267 n n C1 C2 P8J doub 268 n y C2 H1 P8J sing 269 n n C3 H2 P8J sing 270 n n C3 H3 P8J sing 271 n n C4 H4 P8J sing 272 n n C4 H5 P8J sing 273 n n C5 H6 P8J sing 274 n n C6 H7 P8J sing 275 n n C7 H8 P8J sing 276 n n C10 H9 P8J sing 277 n n C10 H10 P8J sing 278 n n C11 H11 P8J sing 279 n n C12 H12 P8J sing 280 n n C14 H13 P8J sing 281 n n C16 H14 P8J sing 282 n n C16 H15 P8J sing 283 n n C16 H16 P8J sing 284 n n C13 H17 P8J sing 285 n n O9 H18 P8J sing 286 n n O7 H19 P8J sing 287 n n C15 H20 P8J sing 288 n n O10 H21 P8J sing 289 n n O1 H22 P8J sing 290 n n C9 H23 P8J sing 291 n n O5 H24 P8J sing 292 n n C8 H25 P8J sing 293 n n O4 H26 P8J sing 294 n n O3 H27 P8J sing 295 n n # _atom_sites.entry_id 6Q17 _atom_sites.fract_transf_matrix[1][1] 0.02798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P8J A 1 301 1 P8J PDB . C 3 CL A 1 302 2 CL CL . D 3 CL A 1 303 3 CL CL . E 4 HOH A 1 401 107 HOH HOH . E 4 HOH A 2 402 58 HOH HOH . E 4 HOH A 3 403 67 HOH HOH . E 4 HOH A 4 404 108 HOH HOH . E 4 HOH A 5 405 35 HOH HOH . E 4 HOH A 6 406 60 HOH HOH . E 4 HOH A 7 407 1 HOH HOH . E 4 HOH A 8 408 51 HOH HOH . E 4 HOH A 9 409 99 HOH HOH . E 4 HOH A 10 410 18 HOH HOH . E 4 HOH A 11 411 100 HOH HOH . E 4 HOH A 12 412 77 HOH HOH . E 4 HOH A 13 413 4 HOH HOH . E 4 HOH A 14 414 43 HOH HOH . E 4 HOH A 15 415 32 HOH HOH . E 4 HOH A 16 416 20 HOH HOH . E 4 HOH A 17 417 84 HOH HOH . E 4 HOH A 18 418 80 HOH HOH . E 4 HOH A 19 419 21 HOH HOH . E 4 HOH A 20 420 2 HOH HOH . E 4 HOH A 21 421 7 HOH HOH . E 4 HOH A 22 422 41 HOH HOH . E 4 HOH A 23 423 55 HOH HOH . E 4 HOH A 24 424 36 HOH HOH . E 4 HOH A 25 425 78 HOH HOH . E 4 HOH A 26 426 48 HOH HOH . E 4 HOH A 27 427 13 HOH HOH . E 4 HOH A 28 428 68 HOH HOH . E 4 HOH A 29 429 33 HOH HOH . E 4 HOH A 30 430 31 HOH HOH . E 4 HOH A 31 431 76 HOH HOH . E 4 HOH A 32 432 10 HOH HOH . E 4 HOH A 33 433 5 HOH HOH . E 4 HOH A 34 434 27 HOH HOH . E 4 HOH A 35 435 3 HOH HOH . E 4 HOH A 36 436 12 HOH HOH . E 4 HOH A 37 437 86 HOH HOH . E 4 HOH A 38 438 64 HOH HOH . E 4 HOH A 39 439 59 HOH HOH . E 4 HOH A 40 440 29 HOH HOH . E 4 HOH A 41 441 19 HOH HOH . E 4 HOH A 42 442 40 HOH HOH . E 4 HOH A 43 443 38 HOH HOH . E 4 HOH A 44 444 72 HOH HOH . E 4 HOH A 45 445 65 HOH HOH . E 4 HOH A 46 446 73 HOH HOH . E 4 HOH A 47 447 11 HOH HOH . E 4 HOH A 48 448 8 HOH HOH . E 4 HOH A 49 449 39 HOH HOH . E 4 HOH A 50 450 83 HOH HOH . E 4 HOH A 51 451 42 HOH HOH . E 4 HOH A 52 452 54 HOH HOH . E 4 HOH A 53 453 74 HOH HOH . E 4 HOH A 54 454 34 HOH HOH . E 4 HOH A 55 455 53 HOH HOH . E 4 HOH A 56 456 47 HOH HOH . E 4 HOH A 57 457 15 HOH HOH . E 4 HOH A 58 458 81 HOH HOH . E 4 HOH A 59 459 89 HOH HOH . E 4 HOH A 60 460 109 HOH HOH . E 4 HOH A 61 461 94 HOH HOH . E 4 HOH A 62 462 101 HOH HOH . E 4 HOH A 63 463 57 HOH HOH . E 4 HOH A 64 464 66 HOH HOH . E 4 HOH A 65 465 26 HOH HOH . E 4 HOH A 66 466 28 HOH HOH . E 4 HOH A 67 467 25 HOH HOH . E 4 HOH A 68 468 61 HOH HOH . E 4 HOH A 69 469 50 HOH HOH . E 4 HOH A 70 470 63 HOH HOH . E 4 HOH A 71 471 37 HOH HOH . E 4 HOH A 72 472 17 HOH HOH . E 4 HOH A 73 473 70 HOH HOH . E 4 HOH A 74 474 98 HOH HOH . E 4 HOH A 75 475 71 HOH HOH . E 4 HOH A 76 476 23 HOH HOH . E 4 HOH A 77 477 6 HOH HOH . E 4 HOH A 78 478 52 HOH HOH . E 4 HOH A 79 479 16 HOH HOH . E 4 HOH A 80 480 9 HOH HOH . E 4 HOH A 81 481 22 HOH HOH . E 4 HOH A 82 482 95 HOH HOH . E 4 HOH A 83 483 93 HOH HOH . E 4 HOH A 84 484 45 HOH HOH . E 4 HOH A 85 485 24 HOH HOH . E 4 HOH A 86 486 110 HOH HOH . E 4 HOH A 87 487 96 HOH HOH . E 4 HOH A 88 488 90 HOH HOH . E 4 HOH A 89 489 104 HOH HOH . E 4 HOH A 90 490 106 HOH HOH . E 4 HOH A 91 491 92 HOH HOH . E 4 HOH A 92 492 56 HOH HOH . E 4 HOH A 93 493 105 HOH HOH . E 4 HOH A 94 494 46 HOH HOH . E 4 HOH A 95 495 102 HOH HOH . E 4 HOH A 96 496 82 HOH HOH . E 4 HOH A 97 497 44 HOH HOH . E 4 HOH A 98 498 97 HOH HOH . E 4 HOH A 99 499 30 HOH HOH . E 4 HOH A 100 500 103 HOH HOH . E 4 HOH A 101 501 49 HOH HOH . E 4 HOH A 102 502 88 HOH HOH . E 4 HOH A 103 503 85 HOH HOH . E 4 HOH A 104 504 75 HOH HOH . E 4 HOH A 105 505 79 HOH HOH . E 4 HOH A 106 506 87 HOH HOH . E 4 HOH A 107 507 14 HOH HOH . E 4 HOH A 108 508 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 P8J . . . B 2 -21.447 -10.465 2.402 1 57.17 ? C2 P8J 301 A 1 HETATM 2 C C3 P8J . . . B 2 -22.658 -12.72 2.325 1 77.06 ? C3 P8J 301 A 1 HETATM 3 C C4 P8J . . . B 2 -20.18 -5.497 0.302 1 10.34 ? C4 P8J 301 A 1 HETATM 4 C C5 P8J . . . B 2 -19.541 -6.515 1.234 1 17.65 ? C5 P8J 301 A 1 HETATM 5 C C6 P8J . . . B 2 -19.645 -8.747 2.013 1 16.76 ? C6 P8J 301 A 1 HETATM 6 C C7 P8J . . . B 2 -18.188 -8.932 1.687 1 27.05 ? C7 P8J 301 A 1 HETATM 7 C C10 P8J . . . B 2 -21.498 -14.7 -2.242 1 72.17 ? C10 P8J 301 A 1 HETATM 8 C C11 P8J . . . B 2 -22.576 -13.694 -1.806 1 83.17 ? C11 P8J 301 A 1 HETATM 9 C C12 P8J . . . B 2 -24.747 -12.618 -2.074 1 72.16 ? C12 P8J 301 A 1 HETATM 10 C C14 P8J . . . B 2 -23.616 -12.604 0.142 1 84.5 ? C14 P8J 301 A 1 HETATM 11 C C16 P8J . . . B 2 -25.973 -12.583 -4.152 1 41.57 ? C16 P8J 301 A 1 HETATM 12 O O11 P8J . . . B 2 -26.047 -12.634 -2.725 1 62.54 ? O11 P8J 301 A 1 HETATM 13 C C13 P8J . . . B 2 -24.953 -12.619 -0.564 1 68.01 ? C13 P8J 301 A 1 HETATM 14 O O9 P8J . . . B 2 -25.662 -11.442 -0.186 1 57.9 ? O9 P8J 301 A 1 HETATM 15 O O8 P8J . . . B 2 -23.883 -13.727 -2.484 1 84.25 ? O8 P8J 301 A 1 HETATM 16 O O7 P8J . . . B 2 -21.153 -14.498 -3.611 1 74.02 ? O7 P8J 301 A 1 HETATM 17 C C15 P8J . . . B 2 -22.773 -13.789 -0.296 1 89.79 ? C15 P8J 301 A 1 HETATM 18 O O10 P8J . . . B 2 -23.446 -15.017 0.03 1 81.06 ? O10 P8J 301 A 1 HETATM 19 O O6 P8J . . . B 2 -23.855 -12.607 1.552 1 84.72 ? O6 P8J 301 A 1 HETATM 20 C C1 P8J . . . B 2 -21.537 -11.719 1.994 1 73.5 ? C1 P8J 301 A 1 HETATM 21 N N3 P8J . . . B 2 -20.469 -11.988 1.255 1 60.45 ? N3 P8J 301 A 1 HETATM 22 N N2 P8J . . . B 2 -19.781 -10.982 1.22 1 50.76 ? N2 P8J 301 A 1 HETATM 23 N N1 P8J . . . B 2 -20.281 -10.062 1.906 1 33.46 ? N1 P8J 301 A 1 HETATM 24 O O2 P8J . . . B 2 -20.213 -7.792 1.079 1 12.99 ? O2 P8J 301 A 1 HETATM 25 O O1 P8J . . . B 2 -21.555 -5.37 0.646 1 15.08 ? O1 P8J 301 A 1 HETATM 26 C C9 P8J . . . B 2 -18.04 -6.65 0.944 1 12.26 ? C9 P8J 301 A 1 HETATM 27 O O5 P8J . . . B 2 -17.837 -7.13 -0.374 1 11.51 ? O5 P8J 301 A 1 HETATM 28 C C8 P8J . . . B 2 -17.472 -7.641 1.913 1 20.23 ? C8 P8J 301 A 1 HETATM 29 O O4 P8J . . . B 2 -16.076 -7.862 1.658 1 19.15 ? O4 P8J 301 A 1 HETATM 30 O O3 P8J . . . B 2 -17.629 -9.856 2.624 1 28.05 ? O3 P8J 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #