data_6Q18 # _model_server_result.job_id vMRJSZPAWypJisF7y1jR2g _model_server_result.datetime_utc '2024-12-27 10:45:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6Q18 # _exptl.entry_id 6Q18 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q18 _cell.length_a 58 _cell.length_b 69.64 _cell.length_c 191.49 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 59 1_555 A SG CYS 20 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? disulf ? disulf2 A SG CYS 43 A CYS 94 1_555 A SG CYS 88 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 24 L CYS 22 1_555 B SG CYS 89 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 139 L CYS 137 1_555 B SG CYS 198 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 24 H CYS 22 1_555 C SG CYS 98 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 C SG CYS 105 H CYS 103 1_555 C SG CYS 110 H CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 C SG CYS 159 H CYS 157 1_555 C SG CYS 215 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 78 A ASN 129 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.543 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6Q18 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 264 NAG NAG . E 4 NAG A 1 302 265 NAG NAG . F 5 GOL A 1 303 301 GOL GOL . G 6 HOH A 1 401 7 HOH HOH . G 6 HOH A 2 402 87 HOH HOH . G 6 HOH A 3 403 28 HOH HOH . G 6 HOH A 4 404 72 HOH HOH . G 6 HOH A 5 405 51 HOH HOH . G 6 HOH A 6 406 67 HOH HOH . G 6 HOH A 7 407 85 HOH HOH . G 6 HOH A 8 408 35 HOH HOH . G 6 HOH A 9 409 5 HOH HOH . G 6 HOH A 10 410 40 HOH HOH . G 6 HOH A 11 411 44 HOH HOH . G 6 HOH A 12 412 49 HOH HOH . G 6 HOH A 13 413 92 HOH HOH . G 6 HOH A 14 414 37 HOH HOH . G 6 HOH A 15 415 25 HOH HOH . G 6 HOH A 16 416 68 HOH HOH . G 6 HOH A 17 417 12 HOH HOH . G 6 HOH A 18 418 17 HOH HOH . G 6 HOH A 19 419 53 HOH HOH . G 6 HOH A 20 420 16 HOH HOH . G 6 HOH A 21 421 3 HOH HOH . G 6 HOH A 22 422 60 HOH HOH . G 6 HOH A 23 423 59 HOH HOH . G 6 HOH A 24 424 76 HOH HOH . G 6 HOH A 25 425 93 HOH HOH . G 6 HOH A 26 426 79 HOH HOH . H 6 HOH L 1 301 86 HOH HOH . H 6 HOH L 2 302 91 HOH HOH . H 6 HOH L 3 303 61 HOH HOH . H 6 HOH L 4 304 69 HOH HOH . H 6 HOH L 5 305 1 HOH HOH . H 6 HOH L 6 306 43 HOH HOH . H 6 HOH L 7 307 64 HOH HOH . H 6 HOH L 8 308 22 HOH HOH . H 6 HOH L 9 309 45 HOH HOH . H 6 HOH L 10 310 4 HOH HOH . H 6 HOH L 11 311 10 HOH HOH . H 6 HOH L 12 312 31 HOH HOH . H 6 HOH L 13 313 6 HOH HOH . H 6 HOH L 14 314 48 HOH HOH . H 6 HOH L 15 315 39 HOH HOH . H 6 HOH L 16 316 47 HOH HOH . H 6 HOH L 17 317 13 HOH HOH . H 6 HOH L 18 318 15 HOH HOH . H 6 HOH L 19 319 27 HOH HOH . H 6 HOH L 20 320 9 HOH HOH . H 6 HOH L 21 321 20 HOH HOH . H 6 HOH L 22 322 29 HOH HOH . H 6 HOH L 23 323 30 HOH HOH . H 6 HOH L 24 324 71 HOH HOH . H 6 HOH L 25 325 14 HOH HOH . H 6 HOH L 26 326 41 HOH HOH . H 6 HOH L 27 327 84 HOH HOH . H 6 HOH L 28 328 70 HOH HOH . H 6 HOH L 29 329 83 HOH HOH . H 6 HOH L 30 330 56 HOH HOH . H 6 HOH L 31 331 80 HOH HOH . H 6 HOH L 32 332 73 HOH HOH . H 6 HOH L 33 333 75 HOH HOH . I 6 HOH H 1 301 21 HOH HOH . I 6 HOH H 2 302 74 HOH HOH . I 6 HOH H 3 303 8 HOH HOH . I 6 HOH H 4 304 38 HOH HOH . I 6 HOH H 5 305 11 HOH HOH . I 6 HOH H 6 306 18 HOH HOH . I 6 HOH H 7 307 33 HOH HOH . I 6 HOH H 8 308 34 HOH HOH . I 6 HOH H 9 309 81 HOH HOH . I 6 HOH H 10 310 26 HOH HOH . I 6 HOH H 11 311 36 HOH HOH . I 6 HOH H 12 312 2 HOH HOH . I 6 HOH H 13 313 50 HOH HOH . I 6 HOH H 14 314 78 HOH HOH . I 6 HOH H 15 315 57 HOH HOH . I 6 HOH H 16 316 23 HOH HOH . I 6 HOH H 17 317 82 HOH HOH . I 6 HOH H 18 318 24 HOH HOH . I 6 HOH H 19 319 89 HOH HOH . I 6 HOH H 20 320 46 HOH HOH . I 6 HOH H 21 321 66 HOH HOH . I 6 HOH H 22 322 58 HOH HOH . I 6 HOH H 23 323 32 HOH HOH . I 6 HOH H 24 324 19 HOH HOH . I 6 HOH H 25 325 54 HOH HOH . I 6 HOH H 26 326 52 HOH HOH . I 6 HOH H 27 327 77 HOH HOH . I 6 HOH H 28 328 90 HOH HOH . I 6 HOH H 29 329 88 HOH HOH . I 6 HOH H 30 330 65 HOH HOH . I 6 HOH H 31 331 63 HOH HOH . I 6 HOH H 32 332 42 HOH HOH . I 6 HOH H 33 333 62 HOH HOH . I 6 HOH H 34 334 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 30.408 5.524 0.889 1 78.47 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . D 4 31.534 4.583 1.326 1 83.98 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . D 4 31.721 4.663 2.838 1 87.64 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . D 4 31.955 6.103 3.269 1 88.91 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . D 4 30.812 6.986 2.786 1 87.24 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . D 4 31.05 8.449 3.071 1 86.49 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . D 4 32.192 2.248 0.922 1 83.51 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . D 4 31.73 0.889 0.489 1 83.21 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . D 4 31.264 3.212 0.919 1 84.9 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . D 4 32.829 3.864 3.228 1 89.2 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . D 4 32.041 6.18 4.687 1 90.35 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . D 4 30.68 6.867 1.363 1 84.27 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . D 4 32.423 8.8 2.959 1 85.86 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . D 4 33.351 2.463 1.26 1 82.22 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #