data_6Q1K # _model_server_result.job_id IB0jkfB4MLfgopnHaOm3aQ _model_server_result.datetime_utc '2024-12-25 18:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6Q1K # _exptl.entry_id 6Q1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.61 _cell.angle_gamma 90 _cell.entry_id 6Q1K _cell.length_a 47.16 _cell.length_b 69.99 _cell.length_c 65.23 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 A SG CYS 103 H CYS 103 1_555 A SG CYS 108 H CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 157 H CYS 157 1_555 A SG CYS 213 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 B SG CYS 24 L CYS 22 1_555 B SG CYS 89 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 B SG CYS 139 L CYS 137 1_555 B SG CYS 198 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6Q1K _atom_sites.fract_transf_matrix[1][1] 0.021204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 301 GOL GOL . D 4 HOH H 1 301 177 HOH HOH . D 4 HOH H 2 302 112 HOH HOH . D 4 HOH H 3 303 206 HOH HOH . D 4 HOH H 4 304 236 HOH HOH . D 4 HOH H 5 305 169 HOH HOH . D 4 HOH H 6 306 143 HOH HOH . D 4 HOH H 7 307 145 HOH HOH . D 4 HOH H 8 308 180 HOH HOH . D 4 HOH H 9 309 67 HOH HOH . D 4 HOH H 10 310 185 HOH HOH . D 4 HOH H 11 311 150 HOH HOH . D 4 HOH H 12 312 74 HOH HOH . D 4 HOH H 13 313 209 HOH HOH . D 4 HOH H 14 314 44 HOH HOH . D 4 HOH H 15 315 40 HOH HOH . D 4 HOH H 16 316 6 HOH HOH . D 4 HOH H 17 317 2 HOH HOH . D 4 HOH H 18 318 14 HOH HOH . D 4 HOH H 19 319 241 HOH HOH . D 4 HOH H 20 320 7 HOH HOH . D 4 HOH H 21 321 76 HOH HOH . D 4 HOH H 22 322 133 HOH HOH . D 4 HOH H 23 323 9 HOH HOH . D 4 HOH H 24 324 55 HOH HOH . D 4 HOH H 25 325 80 HOH HOH . D 4 HOH H 26 326 65 HOH HOH . D 4 HOH H 27 327 29 HOH HOH . D 4 HOH H 28 328 56 HOH HOH . D 4 HOH H 29 329 5 HOH HOH . D 4 HOH H 30 330 27 HOH HOH . D 4 HOH H 31 331 77 HOH HOH . D 4 HOH H 32 332 3 HOH HOH . D 4 HOH H 33 333 36 HOH HOH . D 4 HOH H 34 334 198 HOH HOH . D 4 HOH H 35 335 95 HOH HOH . D 4 HOH H 36 336 73 HOH HOH . D 4 HOH H 37 337 82 HOH HOH . D 4 HOH H 38 338 84 HOH HOH . D 4 HOH H 39 339 146 HOH HOH . D 4 HOH H 40 340 62 HOH HOH . D 4 HOH H 41 341 70 HOH HOH . D 4 HOH H 42 342 148 HOH HOH . D 4 HOH H 43 343 71 HOH HOH . D 4 HOH H 44 344 30 HOH HOH . D 4 HOH H 45 345 60 HOH HOH . D 4 HOH H 46 346 106 HOH HOH . D 4 HOH H 47 347 93 HOH HOH . D 4 HOH H 48 348 122 HOH HOH . D 4 HOH H 49 349 53 HOH HOH . D 4 HOH H 50 350 226 HOH HOH . D 4 HOH H 51 351 120 HOH HOH . D 4 HOH H 52 352 89 HOH HOH . D 4 HOH H 53 353 222 HOH HOH . D 4 HOH H 54 354 221 HOH HOH . D 4 HOH H 55 355 238 HOH HOH . D 4 HOH H 56 356 188 HOH HOH . D 4 HOH H 57 357 26 HOH HOH . D 4 HOH H 58 358 154 HOH HOH . D 4 HOH H 59 359 149 HOH HOH . D 4 HOH H 60 360 168 HOH HOH . D 4 HOH H 61 361 15 HOH HOH . D 4 HOH H 62 362 10 HOH HOH . D 4 HOH H 63 363 182 HOH HOH . D 4 HOH H 64 364 160 HOH HOH . D 4 HOH H 65 365 173 HOH HOH . D 4 HOH H 66 366 49 HOH HOH . D 4 HOH H 67 367 128 HOH HOH . D 4 HOH H 68 368 178 HOH HOH . D 4 HOH H 69 369 231 HOH HOH . D 4 HOH H 70 370 141 HOH HOH . D 4 HOH H 71 371 139 HOH HOH . D 4 HOH H 72 372 167 HOH HOH . D 4 HOH H 73 373 195 HOH HOH . D 4 HOH H 74 374 170 HOH HOH . D 4 HOH H 75 375 50 HOH HOH . D 4 HOH H 76 376 104 HOH HOH . D 4 HOH H 77 377 92 HOH HOH . D 4 HOH H 78 378 114 HOH HOH . D 4 HOH H 79 379 98 HOH HOH . D 4 HOH H 80 380 225 HOH HOH . D 4 HOH H 81 381 208 HOH HOH . D 4 HOH H 82 382 237 HOH HOH . D 4 HOH H 83 383 116 HOH HOH . D 4 HOH H 84 384 215 HOH HOH . D 4 HOH H 85 385 192 HOH HOH . D 4 HOH H 86 386 117 HOH HOH . D 4 HOH H 87 387 88 HOH HOH . D 4 HOH H 88 388 54 HOH HOH . D 4 HOH H 89 389 138 HOH HOH . D 4 HOH H 90 390 183 HOH HOH . D 4 HOH H 91 391 216 HOH HOH . D 4 HOH H 92 392 94 HOH HOH . D 4 HOH H 93 393 214 HOH HOH . D 4 HOH H 94 394 229 HOH HOH . D 4 HOH H 95 395 97 HOH HOH . D 4 HOH H 96 396 81 HOH HOH . D 4 HOH H 97 397 86 HOH HOH . D 4 HOH H 98 398 191 HOH HOH . D 4 HOH H 99 399 164 HOH HOH . D 4 HOH H 100 400 213 HOH HOH . D 4 HOH H 101 401 217 HOH HOH . D 4 HOH H 102 402 159 HOH HOH . D 4 HOH H 103 403 205 HOH HOH . D 4 HOH H 104 404 227 HOH HOH . D 4 HOH H 105 405 134 HOH HOH . D 4 HOH H 106 406 126 HOH HOH . D 4 HOH H 107 407 230 HOH HOH . D 4 HOH H 108 408 151 HOH HOH . D 4 HOH H 109 409 61 HOH HOH . D 4 HOH H 110 410 175 HOH HOH . D 4 HOH H 111 411 127 HOH HOH . D 4 HOH H 112 412 220 HOH HOH . D 4 HOH H 113 413 193 HOH HOH . D 4 HOH H 114 414 197 HOH HOH . D 4 HOH H 115 415 194 HOH HOH . D 4 HOH H 116 416 4 HOH HOH . D 4 HOH H 117 417 111 HOH HOH . D 4 HOH H 118 418 176 HOH HOH . D 4 HOH H 119 419 189 HOH HOH . E 4 HOH L 1 401 121 HOH HOH . E 4 HOH L 2 402 46 HOH HOH . E 4 HOH L 3 403 59 HOH HOH . E 4 HOH L 4 404 184 HOH HOH . E 4 HOH L 5 405 19 HOH HOH . E 4 HOH L 6 406 140 HOH HOH . E 4 HOH L 7 407 34 HOH HOH . E 4 HOH L 8 408 32 HOH HOH . E 4 HOH L 9 409 64 HOH HOH . E 4 HOH L 10 410 11 HOH HOH . E 4 HOH L 11 411 123 HOH HOH . E 4 HOH L 12 412 20 HOH HOH . E 4 HOH L 13 413 91 HOH HOH . E 4 HOH L 14 414 119 HOH HOH . E 4 HOH L 15 415 78 HOH HOH . E 4 HOH L 16 416 21 HOH HOH . E 4 HOH L 17 417 69 HOH HOH . E 4 HOH L 18 418 105 HOH HOH . E 4 HOH L 19 419 132 HOH HOH . E 4 HOH L 20 420 28 HOH HOH . E 4 HOH L 21 421 235 HOH HOH . E 4 HOH L 22 422 233 HOH HOH . E 4 HOH L 23 423 203 HOH HOH . E 4 HOH L 24 424 51 HOH HOH . E 4 HOH L 25 425 83 HOH HOH . E 4 HOH L 26 426 79 HOH HOH . E 4 HOH L 27 427 45 HOH HOH . E 4 HOH L 28 428 103 HOH HOH . E 4 HOH L 29 429 63 HOH HOH . E 4 HOH L 30 430 24 HOH HOH . E 4 HOH L 31 431 43 HOH HOH . E 4 HOH L 32 432 58 HOH HOH . E 4 HOH L 33 433 223 HOH HOH . E 4 HOH L 34 434 41 HOH HOH . E 4 HOH L 35 435 102 HOH HOH . E 4 HOH L 36 436 75 HOH HOH . E 4 HOH L 37 437 23 HOH HOH . E 4 HOH L 38 438 96 HOH HOH . E 4 HOH L 39 439 18 HOH HOH . E 4 HOH L 40 440 72 HOH HOH . E 4 HOH L 41 441 165 HOH HOH . E 4 HOH L 42 442 48 HOH HOH . E 4 HOH L 43 443 171 HOH HOH . E 4 HOH L 44 444 38 HOH HOH . E 4 HOH L 45 445 234 HOH HOH . E 4 HOH L 46 446 13 HOH HOH . E 4 HOH L 47 447 124 HOH HOH . E 4 HOH L 48 448 100 HOH HOH . E 4 HOH L 49 449 152 HOH HOH . E 4 HOH L 50 450 35 HOH HOH . E 4 HOH L 51 451 31 HOH HOH . E 4 HOH L 52 452 1 HOH HOH . E 4 HOH L 53 453 239 HOH HOH . E 4 HOH L 54 454 25 HOH HOH . E 4 HOH L 55 455 12 HOH HOH . E 4 HOH L 56 456 110 HOH HOH . E 4 HOH L 57 457 219 HOH HOH . E 4 HOH L 58 458 162 HOH HOH . E 4 HOH L 59 459 47 HOH HOH . E 4 HOH L 60 460 131 HOH HOH . E 4 HOH L 61 461 99 HOH HOH . E 4 HOH L 62 462 52 HOH HOH . E 4 HOH L 63 463 107 HOH HOH . E 4 HOH L 64 464 157 HOH HOH . E 4 HOH L 65 465 42 HOH HOH . E 4 HOH L 66 466 155 HOH HOH . E 4 HOH L 67 467 109 HOH HOH . E 4 HOH L 68 468 202 HOH HOH . E 4 HOH L 69 469 85 HOH HOH . E 4 HOH L 70 470 17 HOH HOH . E 4 HOH L 71 471 190 HOH HOH . E 4 HOH L 72 472 57 HOH HOH . E 4 HOH L 73 473 68 HOH HOH . E 4 HOH L 74 474 33 HOH HOH . E 4 HOH L 75 475 136 HOH HOH . E 4 HOH L 76 476 108 HOH HOH . E 4 HOH L 77 477 156 HOH HOH . E 4 HOH L 78 478 212 HOH HOH . E 4 HOH L 79 479 87 HOH HOH . E 4 HOH L 80 480 115 HOH HOH . E 4 HOH L 81 481 135 HOH HOH . E 4 HOH L 82 482 37 HOH HOH . E 4 HOH L 83 483 66 HOH HOH . E 4 HOH L 84 484 196 HOH HOH . E 4 HOH L 85 485 147 HOH HOH . E 4 HOH L 86 486 187 HOH HOH . E 4 HOH L 87 487 22 HOH HOH . E 4 HOH L 88 488 130 HOH HOH . E 4 HOH L 89 489 129 HOH HOH . E 4 HOH L 90 490 137 HOH HOH . E 4 HOH L 91 491 161 HOH HOH . E 4 HOH L 92 492 16 HOH HOH . E 4 HOH L 93 493 101 HOH HOH . E 4 HOH L 94 494 224 HOH HOH . E 4 HOH L 95 495 158 HOH HOH . E 4 HOH L 96 496 8 HOH HOH . E 4 HOH L 97 497 199 HOH HOH . E 4 HOH L 98 498 201 HOH HOH . E 4 HOH L 99 499 211 HOH HOH . E 4 HOH L 100 500 118 HOH HOH . E 4 HOH L 101 501 125 HOH HOH . E 4 HOH L 102 502 172 HOH HOH . E 4 HOH L 103 503 228 HOH HOH . E 4 HOH L 104 504 113 HOH HOH . E 4 HOH L 105 505 39 HOH HOH . E 4 HOH L 106 506 142 HOH HOH . E 4 HOH L 107 507 166 HOH HOH . E 4 HOH L 108 508 181 HOH HOH . E 4 HOH L 109 509 153 HOH HOH . E 4 HOH L 110 510 204 HOH HOH . E 4 HOH L 111 511 207 HOH HOH . E 4 HOH L 112 512 232 HOH HOH . E 4 HOH L 113 513 200 HOH HOH . E 4 HOH L 114 514 240 HOH HOH . E 4 HOH L 115 515 90 HOH HOH . E 4 HOH L 116 516 218 HOH HOH . E 4 HOH L 117 517 179 HOH HOH . E 4 HOH L 118 518 144 HOH HOH . E 4 HOH L 119 519 210 HOH HOH . E 4 HOH L 120 520 186 HOH HOH . E 4 HOH L 121 521 163 HOH HOH . E 4 HOH L 122 522 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 62.288 -4.179 -38.717 1 41.21 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . C 3 63.596 -4.656 -38.826 1 39.69 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . C 3 61.942 -4.084 -37.225 1 42.32 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . C 3 62.201 -5.261 -36.532 1 41.74 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . C 3 60.452 -3.629 -37.195 1 43.66 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . C 3 60.138 -3.218 -35.878 1 40.67 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #