data_6Q1R
#
_model_server_result.job_id            TpebMYHOYbTegKfyF20HFQ 
_model_server_result.datetime_utc      '2024-11-07 13:24:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    6Q1R 
#
_exptl.entry_id    6Q1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.96 
_cell.angle_gamma         90 
_cell.entry_id            6Q1R 
_cell.length_a            66.431 
_cell.length_b            203.248 
_cell.length_c            48.112 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 151 A LYS 149 1_555 E C4A PLP . A PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale2 B NZ LYS 151 B LYS 149 1_555 H C4A PLP . B PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale3 C NZ LYS 151 C LYS 149 1_555 I C4A PLP . C PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale4 D NZ LYS 151 D LYS 149 1_555 K C4A PLP . D PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 293 n y 
N1 C6 PLP sing 294 n y 
C2 C2A PLP sing 295 n n 
C2 C3 PLP sing 296 n y 
C2A H2A1 PLP sing 297 n n 
C2A H2A2 PLP sing 298 n n 
C2A H2A3 PLP sing 299 n n 
C3 O3 PLP sing 300 n n 
C3 C4 PLP doub 301 n y 
O3 HO3 PLP sing 302 n n 
C4 C4A PLP sing 303 n n 
C4 C5 PLP sing 304 n y 
C4A O4A PLP doub 305 n n 
C4A H4A PLP sing 306 n n 
C5 C6 PLP doub 307 n y 
C5 C5A PLP sing 308 n n 
C6 H6 PLP sing 309 n n 
C5A O4P PLP sing 310 n n 
C5A H5A1 PLP sing 311 n n 
C5A H5A2 PLP sing 312 n n 
O4P P PLP sing 313 n n 
P O1P PLP doub 314 n n 
P O2P PLP sing 315 n n 
P O3P PLP sing 316 n n 
O2P HOP2 PLP sing 317 n n 
O3P HOP3 PLP sing 318 n n 
#
_atom_sites.entry_id                     6Q1R 
_atom_sites.fract_transf_matrix[1][1]    0.015053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.00001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 301 290 PLP PLP . 
F 3 CIT A 1 302 2 CIT CIT . 
G 4 GOL A 1 303 3 GOL GOL . 
H 2 PLP B 1 301 290 PLP PLP . 
I 2 PLP C 1 301 290 PLP PLP . 
J 3 CIT C 1 302 1 CIT CIT . 
K 2 PLP D 1 301 290 PLP PLP . 
L 5 HOH A 1 401 36 HOH HOH . 
L 5 HOH A 2 402 17 HOH HOH . 
L 5 HOH A 3 403 8 HOH HOH . 
L 5 HOH A 4 404 15 HOH HOH . 
L 5 HOH A 5 405 29 HOH HOH . 
L 5 HOH A 6 406 13 HOH HOH . 
L 5 HOH A 7 407 61 HOH HOH . 
L 5 HOH A 8 408 42 HOH HOH . 
L 5 HOH A 9 409 57 HOH HOH . 
L 5 HOH A 10 410 50 HOH HOH . 
L 5 HOH A 11 411 52 HOH HOH . 
L 5 HOH A 12 412 45 HOH HOH . 
L 5 HOH A 13 413 25 HOH HOH . 
L 5 HOH A 14 414 21 HOH HOH . 
L 5 HOH A 15 415 2 HOH HOH . 
L 5 HOH A 16 416 33 HOH HOH . 
L 5 HOH A 17 417 34 HOH HOH . 
L 5 HOH A 18 418 70 HOH HOH . 
L 5 HOH A 19 419 73 HOH HOH . 
L 5 HOH A 20 420 16 HOH HOH . 
L 5 HOH A 21 421 44 HOH HOH . 
L 5 HOH A 22 422 62 HOH HOH . 
L 5 HOH A 23 423 86 HOH HOH . 
L 5 HOH A 24 424 54 HOH HOH . 
L 5 HOH A 25 425 56 HOH HOH . 
M 5 HOH B 1 401 30 HOH HOH . 
M 5 HOH B 2 402 5 HOH HOH . 
M 5 HOH B 3 403 19 HOH HOH . 
M 5 HOH B 4 404 6 HOH HOH . 
M 5 HOH B 5 405 27 HOH HOH . 
M 5 HOH B 6 406 53 HOH HOH . 
M 5 HOH B 7 407 59 HOH HOH . 
M 5 HOH B 8 408 37 HOH HOH . 
M 5 HOH B 9 409 77 HOH HOH . 
M 5 HOH B 10 410 49 HOH HOH . 
M 5 HOH B 11 411 18 HOH HOH . 
M 5 HOH B 12 412 83 HOH HOH . 
N 5 HOH C 1 401 20 HOH HOH . 
N 5 HOH C 2 402 14 HOH HOH . 
N 5 HOH C 3 403 55 HOH HOH . 
N 5 HOH C 4 404 47 HOH HOH . 
N 5 HOH C 5 405 41 HOH HOH . 
N 5 HOH C 6 406 3 HOH HOH . 
N 5 HOH C 7 407 9 HOH HOH . 
N 5 HOH C 8 408 24 HOH HOH . 
N 5 HOH C 9 409 23 HOH HOH . 
N 5 HOH C 10 410 51 HOH HOH . 
N 5 HOH C 11 411 28 HOH HOH . 
N 5 HOH C 12 412 74 HOH HOH . 
N 5 HOH C 13 413 60 HOH HOH . 
N 5 HOH C 14 414 67 HOH HOH . 
N 5 HOH C 15 415 10 HOH HOH . 
N 5 HOH C 16 416 7 HOH HOH . 
N 5 HOH C 17 417 63 HOH HOH . 
N 5 HOH C 18 418 72 HOH HOH . 
N 5 HOH C 19 419 69 HOH HOH . 
N 5 HOH C 20 420 80 HOH HOH . 
N 5 HOH C 21 421 48 HOH HOH . 
N 5 HOH C 22 422 85 HOH HOH . 
N 5 HOH C 23 423 38 HOH HOH . 
N 5 HOH C 24 424 12 HOH HOH . 
N 5 HOH C 25 425 71 HOH HOH . 
N 5 HOH C 26 426 31 HOH HOH . 
N 5 HOH C 27 427 82 HOH HOH . 
N 5 HOH C 28 428 43 HOH HOH . 
N 5 HOH C 29 429 22 HOH HOH . 
N 5 HOH C 30 430 40 HOH HOH . 
N 5 HOH C 31 431 79 HOH HOH . 
N 5 HOH C 32 432 1 HOH HOH . 
N 5 HOH C 33 433 39 HOH HOH . 
N 5 HOH C 34 434 78 HOH HOH . 
N 5 HOH C 35 435 76 HOH HOH . 
N 5 HOH C 36 436 64 HOH HOH . 
O 5 HOH D 1 401 35 HOH HOH . 
O 5 HOH D 2 402 11 HOH HOH . 
O 5 HOH D 3 403 26 HOH HOH . 
O 5 HOH D 4 404 81 HOH HOH . 
O 5 HOH D 5 405 4 HOH HOH . 
O 5 HOH D 6 406 46 HOH HOH . 
O 5 HOH D 7 407 68 HOH HOH . 
O 5 HOH D 8 408 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . E 2 25.022 -6.703 6.766 1 48.1 ? N1 PLP 301 A 1 
HETATM 2 C C2 PLP . . . E 2 24.874 -7.982 6.346 1 47.7 ? C2 PLP 301 A 1 
HETATM 3 C C2A PLP . . . E 2 25.335 -9.145 7.19 1 44.07 ? C2A PLP 301 A 1 
HETATM 4 C C3 PLP . . . E 2 24.246 -8.248 5.033 1 50.28 ? C3 PLP 301 A 1 
HETATM 5 O O3 PLP . . . E 2 24.085 -9.523 4.584 1 56.57 ? O3 PLP 301 A 1 
HETATM 6 C C4 PLP . . . E 2 23.794 -7.095 4.223 1 45.92 ? C4 PLP 301 A 1 
HETATM 7 C C4A PLP . . . E 2 23.196 -7.378 2.899 1 46.53 ? C4A PLP 301 A 1 
HETATM 8 C C5 PLP . . . E 2 24.018 -5.742 4.794 1 44.8 ? C5 PLP 301 A 1 
HETATM 9 C C6 PLP . . . E 2 24.629 -5.642 6.038 1 46.75 ? C6 PLP 301 A 1 
HETATM 10 C C5A PLP . . . E 2 23.617 -4.478 4.076 1 43.8 ? C5A PLP 301 A 1 
HETATM 11 O O4P PLP . . . E 2 24.035 -4.505 2.72 1 44.93 ? O4P PLP 301 A 1 
HETATM 12 P P PLP . . . E 2 23.406 -3.451 1.686 1 48.51 ? P PLP 301 A 1 
HETATM 13 O O1P PLP . . . E 2 24.177 -3.573 0.394 1 52.94 ? O1P PLP 301 A 1 
HETATM 14 O O2P PLP . . . E 2 23.476 -2.052 2.261 1 49.51 ? O2P PLP 301 A 1 
HETATM 15 O O3P PLP . . . E 2 21.972 -3.863 1.474 1 53.63 ? O3P PLP 301 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           15 
#