data_6Q1R # _model_server_result.job_id 0wRTy4b7EDrNTah7IckS5A _model_server_result.datetime_utc '2024-11-07 13:48:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6Q1R # _exptl.entry_id 6Q1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.96 _cell.angle_gamma 90 _cell.entry_id 6Q1R _cell.length_a 66.431 _cell.length_b 203.248 _cell.length_c 48.112 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,L,M 1 1 C,D,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 151 A LYS 149 1_555 E C4A PLP . A PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale2 B NZ LYS 151 B LYS 149 1_555 H C4A PLP . B PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale3 C NZ LYS 151 C LYS 149 1_555 I C4A PLP . C PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? covale ? covale4 D NZ LYS 151 D LYS 149 1_555 K C4A PLP . D PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 293 n y N1 C6 PLP sing 294 n y C2 C2A PLP sing 295 n n C2 C3 PLP sing 296 n y C2A H2A1 PLP sing 297 n n C2A H2A2 PLP sing 298 n n C2A H2A3 PLP sing 299 n n C3 O3 PLP sing 300 n n C3 C4 PLP doub 301 n y O3 HO3 PLP sing 302 n n C4 C4A PLP sing 303 n n C4 C5 PLP sing 304 n y C4A O4A PLP doub 305 n n C4A H4A PLP sing 306 n n C5 C6 PLP doub 307 n y C5 C5A PLP sing 308 n n C6 H6 PLP sing 309 n n C5A O4P PLP sing 310 n n C5A H5A1 PLP sing 311 n n C5A H5A2 PLP sing 312 n n O4P P PLP sing 313 n n P O1P PLP doub 314 n n P O2P PLP sing 315 n n P O3P PLP sing 316 n n O2P HOP2 PLP sing 317 n n O3P HOP3 PLP sing 318 n n # _atom_sites.entry_id 6Q1R _atom_sites.fract_transf_matrix[1][1] 0.015053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.00001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP A 1 301 290 PLP PLP . F 3 CIT A 1 302 2 CIT CIT . G 4 GOL A 1 303 3 GOL GOL . H 2 PLP B 1 301 290 PLP PLP . I 2 PLP C 1 301 290 PLP PLP . J 3 CIT C 1 302 1 CIT CIT . K 2 PLP D 1 301 290 PLP PLP . L 5 HOH A 1 401 36 HOH HOH . L 5 HOH A 2 402 17 HOH HOH . L 5 HOH A 3 403 8 HOH HOH . L 5 HOH A 4 404 15 HOH HOH . L 5 HOH A 5 405 29 HOH HOH . L 5 HOH A 6 406 13 HOH HOH . L 5 HOH A 7 407 61 HOH HOH . L 5 HOH A 8 408 42 HOH HOH . L 5 HOH A 9 409 57 HOH HOH . L 5 HOH A 10 410 50 HOH HOH . L 5 HOH A 11 411 52 HOH HOH . L 5 HOH A 12 412 45 HOH HOH . L 5 HOH A 13 413 25 HOH HOH . L 5 HOH A 14 414 21 HOH HOH . L 5 HOH A 15 415 2 HOH HOH . L 5 HOH A 16 416 33 HOH HOH . L 5 HOH A 17 417 34 HOH HOH . L 5 HOH A 18 418 70 HOH HOH . L 5 HOH A 19 419 73 HOH HOH . L 5 HOH A 20 420 16 HOH HOH . L 5 HOH A 21 421 44 HOH HOH . L 5 HOH A 22 422 62 HOH HOH . L 5 HOH A 23 423 86 HOH HOH . L 5 HOH A 24 424 54 HOH HOH . L 5 HOH A 25 425 56 HOH HOH . M 5 HOH B 1 401 30 HOH HOH . M 5 HOH B 2 402 5 HOH HOH . M 5 HOH B 3 403 19 HOH HOH . M 5 HOH B 4 404 6 HOH HOH . M 5 HOH B 5 405 27 HOH HOH . M 5 HOH B 6 406 53 HOH HOH . M 5 HOH B 7 407 59 HOH HOH . M 5 HOH B 8 408 37 HOH HOH . M 5 HOH B 9 409 77 HOH HOH . M 5 HOH B 10 410 49 HOH HOH . M 5 HOH B 11 411 18 HOH HOH . M 5 HOH B 12 412 83 HOH HOH . N 5 HOH C 1 401 20 HOH HOH . N 5 HOH C 2 402 14 HOH HOH . N 5 HOH C 3 403 55 HOH HOH . N 5 HOH C 4 404 47 HOH HOH . N 5 HOH C 5 405 41 HOH HOH . N 5 HOH C 6 406 3 HOH HOH . N 5 HOH C 7 407 9 HOH HOH . N 5 HOH C 8 408 24 HOH HOH . N 5 HOH C 9 409 23 HOH HOH . N 5 HOH C 10 410 51 HOH HOH . N 5 HOH C 11 411 28 HOH HOH . N 5 HOH C 12 412 74 HOH HOH . N 5 HOH C 13 413 60 HOH HOH . N 5 HOH C 14 414 67 HOH HOH . N 5 HOH C 15 415 10 HOH HOH . N 5 HOH C 16 416 7 HOH HOH . N 5 HOH C 17 417 63 HOH HOH . N 5 HOH C 18 418 72 HOH HOH . N 5 HOH C 19 419 69 HOH HOH . N 5 HOH C 20 420 80 HOH HOH . N 5 HOH C 21 421 48 HOH HOH . N 5 HOH C 22 422 85 HOH HOH . N 5 HOH C 23 423 38 HOH HOH . N 5 HOH C 24 424 12 HOH HOH . N 5 HOH C 25 425 71 HOH HOH . N 5 HOH C 26 426 31 HOH HOH . N 5 HOH C 27 427 82 HOH HOH . N 5 HOH C 28 428 43 HOH HOH . N 5 HOH C 29 429 22 HOH HOH . N 5 HOH C 30 430 40 HOH HOH . N 5 HOH C 31 431 79 HOH HOH . N 5 HOH C 32 432 1 HOH HOH . N 5 HOH C 33 433 39 HOH HOH . N 5 HOH C 34 434 78 HOH HOH . N 5 HOH C 35 435 76 HOH HOH . N 5 HOH C 36 436 64 HOH HOH . O 5 HOH D 1 401 35 HOH HOH . O 5 HOH D 2 402 11 HOH HOH . O 5 HOH D 3 403 26 HOH HOH . O 5 HOH D 4 404 81 HOH HOH . O 5 HOH D 5 405 4 HOH HOH . O 5 HOH D 6 406 46 HOH HOH . O 5 HOH D 7 407 68 HOH HOH . O 5 HOH D 8 408 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . I 2 -8.201 5.794 -16.671 1 39.74 ? N1 PLP 301 C 1 HETATM 2 C C2 PLP . . . I 2 -8.393 7.069 -16.259 1 40.27 ? C2 PLP 301 C 1 HETATM 3 C C2A PLP . . . I 2 -7.999 8.231 -17.135 1 42.59 ? C2A PLP 301 C 1 HETATM 4 C C3 PLP . . . I 2 -9.001 7.318 -14.931 1 39.67 ? C3 PLP 301 C 1 HETATM 5 O O3 PLP . . . I 2 -9.21 8.584 -14.478 1 43.29 ? O3 PLP 301 C 1 HETATM 6 C C4 PLP . . . I 2 -9.387 6.159 -14.1 1 36.47 ? C4 PLP 301 C 1 HETATM 7 C C4A PLP . . . I 2 -9.962 6.466 -12.771 1 39.88 ? C4A PLP 301 C 1 HETATM 8 C C5 PLP . . . I 2 -9.114 4.804 -14.665 1 39.6 ? C5 PLP 301 C 1 HETATM 9 C C6 PLP . . . I 2 -8.535 4.723 -15.928 1 41.36 ? C6 PLP 301 C 1 HETATM 10 C C5A PLP . . . I 2 -9.431 3.495 -13.973 1 42.22 ? C5A PLP 301 C 1 HETATM 11 O O4P PLP . . . I 2 -9.436 3.586 -12.554 1 42.96 ? O4P PLP 301 C 1 HETATM 12 P P PLP . . . I 2 -10.218 2.467 -11.702 1 45.02 ? P PLP 301 C 1 HETATM 13 O O1P PLP . . . I 2 -9.982 1.099 -12.302 1 44 ? O1P PLP 301 C 1 HETATM 14 O O2P PLP . . . I 2 -9.74 2.52 -10.27 1 50.25 ? O2P PLP 301 C 1 HETATM 15 O O3P PLP . . . I 2 -11.685 2.808 -11.765 1 49.85 ? O3P PLP 301 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #