data_6Q1R
#
_model_server_result.job_id            Npu2s-aSfuueEl3J1Si-TA 
_model_server_result.datetime_utc      '2024-11-07 13:32:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":303}' 
#
_entry.id    6Q1R 
#
_exptl.entry_id    6Q1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.96 
_cell.angle_gamma         90 
_cell.entry_id            6Q1R 
_cell.length_a            66.431 
_cell.length_b            203.248 
_cell.length_c            48.112 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,L,M 1 1 
C,D,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 151 A LYS 149 1_555 E C4A PLP . A PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale2 B NZ LYS 151 B LYS 149 1_555 H C4A PLP . B PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale3 C NZ LYS 151 C LYS 149 1_555 I C4A PLP . C PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale4 D NZ LYS 151 D LYS 149 1_555 K C4A PLP . D PLP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     6Q1R 
_atom_sites.fract_transf_matrix[1][1]    0.015053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.00001 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020785 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 301 290 PLP PLP . 
F 3 CIT A 1 302 2 CIT CIT . 
G 4 GOL A 1 303 3 GOL GOL . 
H 2 PLP B 1 301 290 PLP PLP . 
I 2 PLP C 1 301 290 PLP PLP . 
J 3 CIT C 1 302 1 CIT CIT . 
K 2 PLP D 1 301 290 PLP PLP . 
L 5 HOH A 1 401 36 HOH HOH . 
L 5 HOH A 2 402 17 HOH HOH . 
L 5 HOH A 3 403 8 HOH HOH . 
L 5 HOH A 4 404 15 HOH HOH . 
L 5 HOH A 5 405 29 HOH HOH . 
L 5 HOH A 6 406 13 HOH HOH . 
L 5 HOH A 7 407 61 HOH HOH . 
L 5 HOH A 8 408 42 HOH HOH . 
L 5 HOH A 9 409 57 HOH HOH . 
L 5 HOH A 10 410 50 HOH HOH . 
L 5 HOH A 11 411 52 HOH HOH . 
L 5 HOH A 12 412 45 HOH HOH . 
L 5 HOH A 13 413 25 HOH HOH . 
L 5 HOH A 14 414 21 HOH HOH . 
L 5 HOH A 15 415 2 HOH HOH . 
L 5 HOH A 16 416 33 HOH HOH . 
L 5 HOH A 17 417 34 HOH HOH . 
L 5 HOH A 18 418 70 HOH HOH . 
L 5 HOH A 19 419 73 HOH HOH . 
L 5 HOH A 20 420 16 HOH HOH . 
L 5 HOH A 21 421 44 HOH HOH . 
L 5 HOH A 22 422 62 HOH HOH . 
L 5 HOH A 23 423 86 HOH HOH . 
L 5 HOH A 24 424 54 HOH HOH . 
L 5 HOH A 25 425 56 HOH HOH . 
M 5 HOH B 1 401 30 HOH HOH . 
M 5 HOH B 2 402 5 HOH HOH . 
M 5 HOH B 3 403 19 HOH HOH . 
M 5 HOH B 4 404 6 HOH HOH . 
M 5 HOH B 5 405 27 HOH HOH . 
M 5 HOH B 6 406 53 HOH HOH . 
M 5 HOH B 7 407 59 HOH HOH . 
M 5 HOH B 8 408 37 HOH HOH . 
M 5 HOH B 9 409 77 HOH HOH . 
M 5 HOH B 10 410 49 HOH HOH . 
M 5 HOH B 11 411 18 HOH HOH . 
M 5 HOH B 12 412 83 HOH HOH . 
N 5 HOH C 1 401 20 HOH HOH . 
N 5 HOH C 2 402 14 HOH HOH . 
N 5 HOH C 3 403 55 HOH HOH . 
N 5 HOH C 4 404 47 HOH HOH . 
N 5 HOH C 5 405 41 HOH HOH . 
N 5 HOH C 6 406 3 HOH HOH . 
N 5 HOH C 7 407 9 HOH HOH . 
N 5 HOH C 8 408 24 HOH HOH . 
N 5 HOH C 9 409 23 HOH HOH . 
N 5 HOH C 10 410 51 HOH HOH . 
N 5 HOH C 11 411 28 HOH HOH . 
N 5 HOH C 12 412 74 HOH HOH . 
N 5 HOH C 13 413 60 HOH HOH . 
N 5 HOH C 14 414 67 HOH HOH . 
N 5 HOH C 15 415 10 HOH HOH . 
N 5 HOH C 16 416 7 HOH HOH . 
N 5 HOH C 17 417 63 HOH HOH . 
N 5 HOH C 18 418 72 HOH HOH . 
N 5 HOH C 19 419 69 HOH HOH . 
N 5 HOH C 20 420 80 HOH HOH . 
N 5 HOH C 21 421 48 HOH HOH . 
N 5 HOH C 22 422 85 HOH HOH . 
N 5 HOH C 23 423 38 HOH HOH . 
N 5 HOH C 24 424 12 HOH HOH . 
N 5 HOH C 25 425 71 HOH HOH . 
N 5 HOH C 26 426 31 HOH HOH . 
N 5 HOH C 27 427 82 HOH HOH . 
N 5 HOH C 28 428 43 HOH HOH . 
N 5 HOH C 29 429 22 HOH HOH . 
N 5 HOH C 30 430 40 HOH HOH . 
N 5 HOH C 31 431 79 HOH HOH . 
N 5 HOH C 32 432 1 HOH HOH . 
N 5 HOH C 33 433 39 HOH HOH . 
N 5 HOH C 34 434 78 HOH HOH . 
N 5 HOH C 35 435 76 HOH HOH . 
N 5 HOH C 36 436 64 HOH HOH . 
O 5 HOH D 1 401 35 HOH HOH . 
O 5 HOH D 2 402 11 HOH HOH . 
O 5 HOH D 3 403 26 HOH HOH . 
O 5 HOH D 4 404 81 HOH HOH . 
O 5 HOH D 5 405 4 HOH HOH . 
O 5 HOH D 6 406 46 HOH HOH . 
O 5 HOH D 7 407 68 HOH HOH . 
O 5 HOH D 8 408 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 40.84 -2.482 15.351 1 63.81 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . G 4 41.828 -3.154 14.559 1 65.89 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . G 4 41.338 -2.355 16.787 1 61.96 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . G 4 41.408 -3.656 17.388 1 60.41 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . G 4 40.389 -1.457 17.578 1 62.01 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . G 4 40.789 -0.085 17.463 1 61.81 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#