data_6Q20 # _model_server_result.job_id 9sClPVuJ993R1Gfysd8CGw _model_server_result.datetime_utc '2024-11-28 07:34:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":512}' # _entry.id 6Q20 # _exptl.entry_id 6Q20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q20 _cell.length_a 160.452 _cell.length_b 160.452 _cell.length_c 84.173 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -160.452 0 0 3 'crystal symmetry operation' 3_455 -y-1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 -80.226 80.226 0 4 'crystal symmetry operation' 4_445 y-1/2,-x-1/2,z 0 1 0 -1 0 0 0 0 1 -80.226 -80.226 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 4 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 502 NAG 4 n D NAG 2 B 2 NAG A 503 NAG 4 n D BMA 3 B 3 BMA A 504 BMA 4 n D MAN 4 B 4 MAN A 505 MAN 4 n D MAN 5 B 5 MAN A 506 MAN 4 n D MAN 6 B 6 MAN A 507 MAN 4 n D MAN 7 B 7 MAN A 508 MAN 5 n E NAG 1 C 1 NAG A 601 NAG 5 n E NAG 2 C 2 NAG A 602 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 92 1_555 A SG CYS 341 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 48 A CYS 124 1_555 A SG CYS 53 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 99 A CYS 175 1_555 A SG CYS 117 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 107 A CYS 183 1_555 A SG CYS 154 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 156 A CYS 232 1_555 A SG CYS 161 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 202 A CYS 278 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 204 A CYS 280 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 345 A CYS 421 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 24 L CYS 23 1_555 B SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf11 B SG CYS 136 L CYS 134 1_555 B SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 23 H CYS 22 1_555 C SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 C SG CYS 158 H CYS 142 1_555 C SG CYS 214 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 70 A ASN 146 1_555 E C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 124 A ASN 200 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 158 A ASN 234 1_555 F C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 D O4 NAG . B NAG 2 1_555 D C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 D O3 BMA . B BMA 3 1_555 D C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O6 BMA . B BMA 3 1_555 D C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D O2 MAN . B MAN 4 1_555 D C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 D O2 MAN . B MAN 5 1_555 D C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A O GLY 269 A GLY 345 1_555 G CA CA . A CA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc2 A O PRO 271 A PRO 347 1_555 G CA CA . A CA 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6Q20 _atom_sites.fract_transf_matrix[1][1] 0.006232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 510 603 NAG NAG . G 7 CA A 1 511 701 CA CA . H 7 CA A 1 512 702 CA CA . I 8 HOH A 1 601 31 HOH HOH . I 8 HOH A 2 602 2 HOH HOH . I 8 HOH A 3 603 21 HOH HOH . I 8 HOH A 4 604 36 HOH HOH . I 8 HOH A 5 605 9 HOH HOH . I 8 HOH A 6 606 48 HOH HOH . I 8 HOH A 7 607 25 HOH HOH . I 8 HOH A 8 608 12 HOH HOH . I 8 HOH A 9 609 17 HOH HOH . I 8 HOH A 10 610 1 HOH HOH . I 8 HOH A 11 611 42 HOH HOH . I 8 HOH A 12 612 19 HOH HOH . I 8 HOH A 13 613 4 HOH HOH . I 8 HOH A 14 614 35 HOH HOH . I 8 HOH A 15 615 14 HOH HOH . I 8 HOH A 16 616 45 HOH HOH . I 8 HOH A 17 617 3 HOH HOH . I 8 HOH A 18 618 8 HOH HOH . I 8 HOH A 19 619 57 HOH HOH . I 8 HOH A 20 620 27 HOH HOH . I 8 HOH A 21 621 10 HOH HOH . I 8 HOH A 22 622 22 HOH HOH . I 8 HOH A 23 623 47 HOH HOH . I 8 HOH A 24 624 13 HOH HOH . I 8 HOH A 25 625 43 HOH HOH . I 8 HOH A 26 626 34 HOH HOH . I 8 HOH A 27 627 39 HOH HOH . I 8 HOH A 28 628 30 HOH HOH . I 8 HOH A 29 629 23 HOH HOH . I 8 HOH A 30 630 18 HOH HOH . I 8 HOH A 31 631 37 HOH HOH . I 8 HOH A 32 632 38 HOH HOH . I 8 HOH A 33 633 61 HOH HOH . I 8 HOH A 34 634 32 HOH HOH . I 8 HOH A 35 635 29 HOH HOH . I 8 HOH A 36 636 40 HOH HOH . I 8 HOH A 37 637 63 HOH HOH . I 8 HOH A 38 638 46 HOH HOH . I 8 HOH A 39 639 41 HOH HOH . I 8 HOH A 40 640 62 HOH HOH . I 8 HOH A 41 641 44 HOH HOH . J 8 HOH L 1 301 11 HOH HOH . J 8 HOH L 2 302 6 HOH HOH . J 8 HOH L 3 303 33 HOH HOH . J 8 HOH L 4 304 16 HOH HOH . J 8 HOH L 5 305 24 HOH HOH . J 8 HOH L 6 306 49 HOH HOH . J 8 HOH L 7 307 54 HOH HOH . J 8 HOH L 8 308 28 HOH HOH . J 8 HOH L 9 309 50 HOH HOH . J 8 HOH L 10 310 52 HOH HOH . K 8 HOH H 1 301 51 HOH HOH . K 8 HOH H 2 302 26 HOH HOH . K 8 HOH H 3 303 7 HOH HOH . K 8 HOH H 4 304 53 HOH HOH . K 8 HOH H 5 305 15 HOH HOH . K 8 HOH H 6 306 20 HOH HOH . K 8 HOH H 7 307 5 HOH HOH . K 8 HOH H 8 308 56 HOH HOH . K 8 HOH H 9 309 58 HOH HOH . K 8 HOH H 10 310 59 HOH HOH . K 8 HOH H 11 311 55 HOH HOH . K 8 HOH H 12 312 60 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x -80.193 _atom_site.Cartn_y -0.022 _atom_site.Cartn_z 8.842 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 109.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 512 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #