data_6Q2T
#
_model_server_result.job_id            RF8m91zzPvOf1Cf2MWlkLA 
_model_server_result.datetime_utc      '2025-04-25 05:08:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6q2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    6Q2T 
#
_exptl.entry_id    6Q2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6Q2T 
_cell.length_a            117.664 
_cell.length_b            117.664 
_cell.length_c            157.842 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6Q2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,P 1 1 
B,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 392 A CYS 449 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 D NAZ PJM . A PJM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc3 B SG CYS 392 B CYS 449 1_555 N FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc4 N FE HEM . B HEM 601 1_555 O NAZ PJM . B PJM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 200 n n 
CHA C4D HEM doub 201 n n 
CHA HHA HEM sing 202 n n 
CHB C4A HEM sing 203 n n 
CHB C1B HEM doub 204 n n 
CHB HHB HEM sing 205 n n 
CHC C4B HEM sing 206 n n 
CHC C1C HEM doub 207 n n 
CHC HHC HEM sing 208 n n 
CHD C4C HEM doub 209 n n 
CHD C1D HEM sing 210 n n 
CHD HHD HEM sing 211 n n 
C1A C2A HEM doub 212 n y 
C1A NA HEM sing 213 n y 
C2A C3A HEM sing 214 n y 
C2A CAA HEM sing 215 n n 
C3A C4A HEM doub 216 n y 
C3A CMA HEM sing 217 n n 
C4A NA HEM sing 218 n y 
CMA HMA HEM sing 219 n n 
CMA HMAA HEM sing 220 n n 
CMA HMAB HEM sing 221 n n 
CAA CBA HEM sing 222 n n 
CAA HAA HEM sing 223 n n 
CAA HAAA HEM sing 224 n n 
CBA CGA HEM sing 225 n n 
CBA HBA HEM sing 226 n n 
CBA HBAA HEM sing 227 n n 
CGA O1A HEM doub 228 n n 
CGA O2A HEM sing 229 n n 
C1B C2B HEM sing 230 n n 
C1B NB HEM sing 231 n n 
C2B C3B HEM doub 232 n n 
C2B CMB HEM sing 233 n n 
C3B C4B HEM sing 234 n n 
C3B CAB HEM sing 235 n n 
C4B NB HEM doub 236 n n 
CMB HMB HEM sing 237 n n 
CMB HMBA HEM sing 238 n n 
CMB HMBB HEM sing 239 n n 
CAB CBB HEM doub 240 n n 
CAB HAB HEM sing 241 n n 
CBB HBB HEM sing 242 n n 
CBB HBBA HEM sing 243 n n 
C1C C2C HEM sing 244 n y 
C1C NC HEM sing 245 n y 
C2C C3C HEM doub 246 n y 
C2C CMC HEM sing 247 n n 
C3C C4C HEM sing 248 n y 
C3C CAC HEM sing 249 n n 
C4C NC HEM sing 250 n y 
CMC HMC HEM sing 251 n n 
CMC HMCA HEM sing 252 n n 
CMC HMCB HEM sing 253 n n 
CAC CBC HEM doub 254 n n 
CAC HAC HEM sing 255 n n 
CBC HBC HEM sing 256 n n 
CBC HBCA HEM sing 257 n n 
C1D C2D HEM sing 258 n n 
C1D ND HEM doub 259 n n 
C2D C3D HEM doub 260 n n 
C2D CMD HEM sing 261 n n 
C3D C4D HEM sing 262 n n 
C3D CAD HEM sing 263 n n 
C4D ND HEM sing 264 n n 
CMD HMD HEM sing 265 n n 
CMD HMDA HEM sing 266 n n 
CMD HMDB HEM sing 267 n n 
CAD CBD HEM sing 268 n n 
CAD HAD HEM sing 269 n n 
CAD HADA HEM sing 270 n n 
CBD CGD HEM sing 271 n n 
CBD HBD HEM sing 272 n n 
CBD HBDA HEM sing 273 n n 
CGD O1D HEM doub 274 n n 
CGD O2D HEM sing 275 n n 
O2A H2A HEM sing 276 n n 
O2D H2D HEM sing 277 n n 
FE NA HEM sing 278 n n 
FE NB HEM sing 279 n n 
FE NC HEM sing 280 n n 
FE ND HEM sing 281 n n 
#
_atom_sites.entry_id                     6Q2T 
_atom_sites.fract_transf_matrix[1][1]    0.008499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 540 HEM HEM . 
D 3 PJM A 1 602 601 PJM DRG . 
E 4 DXC A 1 603 610 DXC DTR . 
F 4 DXC A 1 604 620 DXC DTR . 
G 4 DXC A 1 605 630 DXC DTR . 
H 4 DXC A 1 606 640 DXC DTR . 
I 4 DXC A 1 607 650 DXC DTR . 
J 4 DXC A 1 608 660 DXC DTR . 
K 4 DXC A 1 609 670 DXC DTR . 
L 4 DXC A 1 610 680 DXC DTR . 
M 3 PJM A 1 611 700 PJM DRG . 
N 2 HEM B 1 601 540 HEM HEM . 
O 3 PJM B 1 602 601 PJM DRG . 
P 5 HOH A 1 701 14 HOH HOH . 
P 5 HOH A 2 702 13 HOH HOH . 
P 5 HOH A 3 703 7 HOH HOH . 
P 5 HOH A 4 704 4 HOH HOH . 
P 5 HOH A 5 705 15 HOH HOH . 
P 5 HOH A 6 706 22 HOH HOH . 
P 5 HOH A 7 707 8 HOH HOH . 
P 5 HOH A 8 708 3 HOH HOH . 
P 5 HOH A 9 709 23 HOH HOH . 
P 5 HOH A 10 710 29 HOH HOH . 
P 5 HOH A 11 711 12 HOH HOH . 
P 5 HOH A 12 712 10 HOH HOH . 
P 5 HOH A 13 713 25 HOH HOH . 
Q 5 HOH B 1 701 19 HOH HOH . 
Q 5 HOH B 2 702 24 HOH HOH . 
Q 5 HOH B 3 703 5 HOH HOH . 
Q 5 HOH B 4 704 21 HOH HOH . 
Q 5 HOH B 5 705 27 HOH HOH . 
Q 5 HOH B 6 706 20 HOH HOH . 
Q 5 HOH B 7 707 11 HOH HOH . 
Q 5 HOH B 8 708 1 HOH HOH . 
Q 5 HOH B 9 709 16 HOH HOH . 
Q 5 HOH B 10 710 17 HOH HOH . 
Q 5 HOH B 11 711 9 HOH HOH . 
Q 5 HOH B 12 712 2 HOH HOH . 
Q 5 HOH B 13 713 6 HOH HOH . 
Q 5 HOH B 14 714 30 HOH HOH . 
Q 5 HOH B 15 715 26 HOH HOH . 
Q 5 HOH B 16 716 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 39.844 28.101 15.796 1 71.32 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . C 2 35.187 28.959 16.833 1 62.79 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . C 2 34.609 24.29 18.106 1 73.1 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . C 2 39.307 23.495 17.234 1 82.64 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . C 2 38.621 28.717 15.972 1 66.96 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . C 2 38.375 30.077 15.701 1 69.56 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . C 2 37.072 30.324 15.995 1 69.9 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . C 2 36.503 29.116 16.446 1 65.48 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . C 2 36.36 31.645 15.854 1 70.58 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . C 2 39.372 31.08 15.181 1 79.59 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . C 2 40.26 31.567 16.329 1 87.4 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . C 2 41.097 32.736 15.878 1 79.82 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . C 2 41.976 33.202 16.635 1 77.1 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . C 2 40.915 33.247 14.75 1 83.06 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . C 2 34.676 27.726 17.249 1 63.26 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . C 2 33.304 27.593 17.587 1 62.95 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . C 2 33.108 26.293 17.944 1 70.69 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . C 2 34.431 25.64 17.811 1 69.3 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . C 2 32.272 28.69 17.543 1 65.62 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . C 2 31.856 25.651 18.385 1 78.02 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . C 2 30.734 26.356 18.503 1 77.76 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . C 2 35.837 23.657 17.981 1 77.62 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . C 2 36.071 22.288 18.186 1 79.74 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . C 2 37.414 22.061 17.935 1 85.3 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . C 2 37.988 23.31 17.573 1 83.09 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . C 2 35.044 21.265 18.602 1 79.67 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . C 2 38.135 20.776 18.009 1 87.13 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . C 2 37.487 19.646 18.273 1 100.49 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . C 2 39.784 24.721 16.766 1 74.73 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . C 2 41.18 24.846 16.331 1 79.46 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . C 2 41.341 26.128 15.953 1 80.17 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . C 2 40.026 26.759 16.118 1 73.8 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . C 2 42.231 23.766 16.334 1 85.66 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . C 2 42.596 26.731 15.374 1 82.78 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . C 2 43.145 27.88 16.221 1 86.27 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . C 2 44.253 28.559 15.457 1 90.97 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . C 2 44.875 29.517 15.97 1 85.43 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . C 2 44.556 28.163 14.309 1 82.32 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . C 2 37.464 28.136 16.439 1 69.06 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . C 2 35.314 26.558 17.393 1 66.33 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . C 2 37.007 24.27 17.608 1 76.76 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . C 2 39.14 25.884 16.618 1 74 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . C 2 37.354 26.238 16.999 1 82.5 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#