data_6Q2T # _model_server_result.job_id -pRVRu2Y_by_zLTKITVcDw _model_server_result.datetime_utc '2024-10-19 16:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6q2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 6Q2T # _exptl.entry_id 6Q2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6Q2T _cell.length_a 117.664 _cell.length_b 117.664 _cell.length_c 157.842 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Q2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,P 1 1 B,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 392 A CYS 449 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 D NAZ PJM . A PJM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 B SG CYS 392 B CYS 449 1_555 N FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 N FE HEM . B HEM 601 1_555 O NAZ PJM . B PJM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 83 n n C1 C6 DXC sing 84 n n C1 O2 DXC sing 85 n n C1 H1 DXC sing 86 n n C2 C3 DXC sing 87 n n C2 H22 DXC sing 88 n n C2 H21 DXC sing 89 n n C3 C4 DXC sing 90 n n C3 C7 DXC sing 91 n n C3 H3 DXC sing 92 n n C4 C5 DXC sing 93 n n C4 C10 DXC sing 94 n n C4 C18 DXC sing 95 n n C5 C6 DXC sing 96 n n C5 H52 DXC sing 97 n n C5 H51 DXC sing 98 n n C6 H62 DXC sing 99 n n C6 H61 DXC sing 100 n n C7 C8 DXC sing 101 n n C7 H72 DXC sing 102 n n C7 H71 DXC sing 103 n n C8 C9 DXC sing 104 n n C8 H82 DXC sing 105 n n C8 H81 DXC sing 106 n n C9 C10 DXC sing 107 n n C9 C11 DXC sing 108 n n C9 H9 DXC sing 109 n n C10 C14 DXC sing 110 n n C10 H10 DXC sing 111 n n C11 C12 DXC sing 112 n n C11 C15 DXC sing 113 n n C11 H11 DXC sing 114 n n C12 C13 DXC sing 115 n n C12 C17 DXC sing 116 n n C12 C20 DXC sing 117 n n C13 C14 DXC sing 118 n n C13 O1 DXC sing 119 n n C13 H13 DXC sing 120 n n C14 H142 DXC sing 121 n n C14 H141 DXC sing 122 n n C15 C16 DXC sing 123 n n C15 H152 DXC sing 124 n n C15 H151 DXC sing 125 n n C16 C17 DXC sing 126 n n C16 H162 DXC sing 127 n n C16 H161 DXC sing 128 n n C17 C19 DXC sing 129 n n C17 H17 DXC sing 130 n n C18 H183 DXC sing 131 n n C18 H182 DXC sing 132 n n C18 H181 DXC sing 133 n n C19 C21 DXC sing 134 n n C19 C24 DXC sing 135 n n C19 H19 DXC sing 136 n n O1 H1O1 DXC sing 137 n n O2 H2 DXC sing 138 n n C20 H203 DXC sing 139 n n C20 H202 DXC sing 140 n n C20 H201 DXC sing 141 n n C21 C22 DXC sing 142 n n C21 H212 DXC sing 143 n n C21 H211 DXC sing 144 n n C22 C23 DXC sing 145 n n C22 H222 DXC sing 146 n n C22 H221 DXC sing 147 n n C23 O3 DXC doub 148 n n C23 O4 DXC sing 149 n n O4 HO4 DXC sing 150 n n C24 H243 DXC sing 151 n n C24 H242 DXC sing 152 n n C24 H241 DXC sing 153 n n # _atom_sites.entry_id 6Q2T _atom_sites.fract_transf_matrix[1][1] 0.008499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 540 HEM HEM . D 3 PJM A 1 602 601 PJM DRG . E 4 DXC A 1 603 610 DXC DTR . F 4 DXC A 1 604 620 DXC DTR . G 4 DXC A 1 605 630 DXC DTR . H 4 DXC A 1 606 640 DXC DTR . I 4 DXC A 1 607 650 DXC DTR . J 4 DXC A 1 608 660 DXC DTR . K 4 DXC A 1 609 670 DXC DTR . L 4 DXC A 1 610 680 DXC DTR . M 3 PJM A 1 611 700 PJM DRG . N 2 HEM B 1 601 540 HEM HEM . O 3 PJM B 1 602 601 PJM DRG . P 5 HOH A 1 701 14 HOH HOH . P 5 HOH A 2 702 13 HOH HOH . P 5 HOH A 3 703 7 HOH HOH . P 5 HOH A 4 704 4 HOH HOH . P 5 HOH A 5 705 15 HOH HOH . P 5 HOH A 6 706 22 HOH HOH . P 5 HOH A 7 707 8 HOH HOH . P 5 HOH A 8 708 3 HOH HOH . P 5 HOH A 9 709 23 HOH HOH . P 5 HOH A 10 710 29 HOH HOH . P 5 HOH A 11 711 12 HOH HOH . P 5 HOH A 12 712 10 HOH HOH . P 5 HOH A 13 713 25 HOH HOH . Q 5 HOH B 1 701 19 HOH HOH . Q 5 HOH B 2 702 24 HOH HOH . Q 5 HOH B 3 703 5 HOH HOH . Q 5 HOH B 4 704 21 HOH HOH . Q 5 HOH B 5 705 27 HOH HOH . Q 5 HOH B 6 706 20 HOH HOH . Q 5 HOH B 7 707 11 HOH HOH . Q 5 HOH B 8 708 1 HOH HOH . Q 5 HOH B 9 709 16 HOH HOH . Q 5 HOH B 10 710 17 HOH HOH . Q 5 HOH B 11 711 9 HOH HOH . Q 5 HOH B 12 712 2 HOH HOH . Q 5 HOH B 13 713 6 HOH HOH . Q 5 HOH B 14 714 30 HOH HOH . Q 5 HOH B 15 715 26 HOH HOH . Q 5 HOH B 16 716 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . F 4 57.919 46.087 42.285 1 52.95 ? C1 DXC 604 A 1 HETATM 2 C C2 DXC . . . F 4 58.767 44.844 42.16 1 54.47 ? C2 DXC 604 A 1 HETATM 3 C C3 DXC . . . F 4 58.773 44.11 43.493 1 52.9 ? C3 DXC 604 A 1 HETATM 4 C C4 DXC . . . F 4 59.267 45.003 44.647 1 52.43 ? C4 DXC 604 A 1 HETATM 5 C C5 DXC . . . F 4 58.601 46.382 44.591 1 56.32 ? C5 DXC 604 A 1 HETATM 6 C C6 DXC . . . F 4 58.663 47.004 43.203 1 55.15 ? C6 DXC 604 A 1 HETATM 7 C C7 DXC . . . F 4 59.642 42.873 43.351 1 46.98 ? C7 DXC 604 A 1 HETATM 8 C C8 DXC . . . F 4 61.021 43.369 42.995 1 47.88 ? C8 DXC 604 A 1 HETATM 9 C C9 DXC . . . F 4 61.59 43.931 44.26 1 51.5 ? C9 DXC 604 A 1 HETATM 10 C C10 DXC . . . F 4 60.802 45.148 44.753 1 51.78 ? C10 DXC 604 A 1 HETATM 11 C C11 DXC . . . F 4 63.011 44.366 43.95 1 46.5 ? C11 DXC 604 A 1 HETATM 12 C C12 DXC . . . F 4 63.472 45.442 44.905 1 48.06 ? C12 DXC 604 A 1 HETATM 13 C C13 DXC . . . F 4 62.724 46.732 44.586 1 48.26 ? C13 DXC 604 A 1 HETATM 14 C C14 DXC . . . F 4 61.333 46.392 44.046 1 51.97 ? C14 DXC 604 A 1 HETATM 15 C C15 DXC . . . F 4 64.016 43.26 44.202 1 47.59 ? C15 DXC 604 A 1 HETATM 16 C C16 DXC . . . F 4 65.33 44.012 44.376 1 49.61 ? C16 DXC 604 A 1 HETATM 17 C C17 DXC . . . F 4 64.964 45.48 44.587 1 49.62 ? C17 DXC 604 A 1 HETATM 18 C C18 DXC . . . F 4 58.801 44.358 45.954 1 56.27 ? C18 DXC 604 A 1 HETATM 19 C C19 DXC . . . F 4 65.801 46.04 45.743 1 54.22 ? C19 DXC 604 A 1 HETATM 20 O O1 DXC . . . F 4 63.448 47.499 43.611 1 51.42 ? O1 DXC 604 A 1 HETATM 21 O O2 DXC . . . F 4 57.753 46.693 40.994 1 55.14 ? O2 DXC 604 A 1 HETATM 22 C C20 DXC . . . F 4 63.242 45.023 46.359 1 53.4 ? C20 DXC 604 A 1 HETATM 23 C C21 DXC . . . F 4 67.254 46.209 45.285 1 55.12 ? C21 DXC 604 A 1 HETATM 24 C C22 DXC . . . F 4 68.107 44.967 45.579 1 56.07 ? C22 DXC 604 A 1 HETATM 25 C C23 DXC . . . F 4 68.754 45.126 46.947 1 57.52 ? C23 DXC 604 A 1 HETATM 26 O O3 DXC . . . F 4 69.052 44.075 47.555 1 55.42 ? O3 DXC 604 A 1 HETATM 27 O O4 DXC . . . F 4 69.035 46.286 47.319 1 66.84 ? O4 DXC 604 A 1 HETATM 28 C C24 DXC . . . F 4 65.263 47.41 46.161 1 53.16 ? C24 DXC 604 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #